Wall clock time and date at job start Mon Mar 30 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 119.99774 * 2 1 4 4 H 1.08006 * 119.99777 * 203.25492 * 3 2 1 5 5 C 1.38810 * 120.00162 * 23.25351 * 3 2 1 6 6 N 1.31617 * 119.99928 * 11.64826 * 5 3 2 7 7 Si 1.86799 * 119.99831 * 191.65696 * 5 3 2 8 8 H 1.48500 * 109.47478 * 89.99943 * 7 5 3 9 9 H 1.48506 * 109.46883 * 209.99906 * 7 5 3 10 10 H 1.48494 * 109.47206 * 329.99625 * 7 5 3 11 11 C 1.46494 * 120.00106 * 179.97438 * 2 1 3 12 12 H 1.08999 * 109.50286 * 179.97438 * 11 2 1 13 13 C 1.53210 * 109.52630 * 59.84329 * 11 2 1 14 14 C 1.53115 * 109.11694 * 182.40297 * 13 11 2 15 15 C 1.53032 * 109.31290 * 57.63377 * 14 13 11 16 16 N 1.46840 * 109.52740 * 300.80384 * 15 14 13 17 17 C 1.46903 * 111.00372 * 185.83788 * 16 15 14 18 18 C 1.50699 * 109.46986 * 66.04132 * 17 16 15 19 19 C 1.38238 * 120.00343 * 269.72674 * 18 17 16 20 20 C 1.38231 * 119.99981 * 179.78746 * 19 18 17 21 21 C 1.38235 * 119.99978 * 0.44522 * 20 19 18 22 22 C 1.38230 * 120.00133 * 359.81097 * 21 20 19 23 23 C 1.38235 * 120.00163 * 359.97438 * 22 21 20 24 24 C 1.46843 * 111.19936 * 61.73791 * 16 15 14 25 25 H 1.09006 * 109.47379 * 274.00771 * 1 2 3 26 26 H 1.08994 * 109.47371 * 34.01141 * 1 2 3 27 27 H 1.09008 * 109.47078 * 154.01280 * 1 2 3 28 28 H 0.97000 * 120.00024 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.57060 * 62.48863 * 13 11 2 30 30 H 1.08997 * 109.51115 * 302.27439 * 13 11 2 31 31 H 1.09001 * 109.50617 * 297.67471 * 14 13 11 32 32 H 1.08998 * 109.50132 * 177.60024 * 14 13 11 33 33 H 1.09002 * 109.46041 * 60.81703 * 15 14 13 34 34 H 1.09007 * 109.46561 * 180.78405 * 15 14 13 35 35 H 1.08994 * 109.47297 * 186.04289 * 17 16 15 36 36 H 1.09003 * 109.47130 * 306.04599 * 17 16 15 37 37 H 1.07998 * 119.99829 * 0.02562 * 19 18 17 38 38 H 1.07999 * 120.00023 * 180.27415 * 20 19 18 39 39 H 1.08005 * 119.99617 * 179.83047 * 21 20 19 40 40 H 1.08009 * 119.99904 * 180.02562 * 22 21 20 41 41 H 1.07992 * 119.99850 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.46222 * 58.27626 * 24 16 15 43 43 H 1.09006 * 109.46423 * 178.25446 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1638 1.2239 -0.3693 5 6 1.5401 2.3392 0.4746 6 7 0.4023 2.2597 1.1314 7 14 2.3346 4.0041 0.1808 8 1 1.8414 4.5688 -1.1010 9 1 1.9846 4.9229 1.2938 10 1 3.8095 3.8442 0.1163 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8253 -2.0754 -1.2476 14 6 2.5494 -3.4239 -1.2075 15 6 2.1701 -4.1640 0.0772 16 7 2.5470 -3.3518 1.2410 17 6 2.3246 -4.0893 2.4920 18 6 3.2648 -5.2653 2.5557 19 6 2.8772 -6.4889 2.0424 20 6 3.7413 -7.5664 2.0969 21 6 4.9896 -7.4228 2.6731 22 6 5.3753 -6.2006 3.1912 23 6 4.5129 -5.1219 3.1327 24 6 1.8283 -2.0713 1.2502 25 1 -0.3634 0.0718 1.0252 26 1 -0.3634 0.8518 -0.5748 27 1 -0.3634 -0.9238 -0.4503 28 1 -0.0234 3.0656 1.4634 29 1 2.1261 -1.5267 -2.1401 30 1 0.7481 -2.2408 -1.2664 31 1 3.6267 -3.2593 -1.2279 32 1 2.2560 -4.0204 -2.0713 33 1 1.0946 -4.3405 0.0905 34 1 2.6952 -5.1185 0.1150 35 1 2.5093 -3.4301 3.3401 36 1 1.2949 -4.4452 2.5258 37 1 1.9006 -6.6019 1.5952 38 1 3.4401 -8.5212 1.6919 39 1 5.6637 -8.2654 2.7182 40 1 6.3508 -6.0883 3.6410 41 1 4.8140 -4.1672 3.5378 42 1 0.7544 -2.2577 1.2580 43 1 2.1052 -1.5057 2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174944881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:17 Heat of formation + Delta-G solvation = 49.572503 kcal Electronic energy + Delta-G solvation = -21386.755155 eV Core-core repulsion = 18432.149674 eV Total energy + Delta-G solvation = -2954.605481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.61476 -38.27667 -35.37577 -33.25227 -31.21641 -30.90657 -30.81195 -28.37612 -26.08502 -25.94227 -23.44926 -22.62967 -22.50511 -21.35811 -20.41677 -18.63562 -16.79407 -16.66195 -15.75283 -15.26841 -15.22903 -14.78754 -14.26417 -13.91237 -13.75878 -13.45202 -13.40226 -13.15384 -12.65580 -12.52468 -12.35753 -12.14484 -11.85875 -11.51872 -11.08675 -10.93589 -10.91556 -10.86552 -10.71043 -10.39065 -10.29075 -10.17852 -9.85282 -9.72371 -9.53177 -8.90892 -8.76837 -8.50401 -7.93158 -6.69857 -5.67829 -3.14125 1.32981 1.39720 3.41246 3.47449 3.48893 3.71243 4.34919 4.57258 4.80702 4.84895 4.97283 5.08579 5.27044 5.30453 5.43404 5.44431 5.49482 5.59584 5.66183 5.73167 5.74957 5.82830 5.98264 6.01417 6.05132 6.13504 6.24669 6.29764 6.39398 6.43796 6.48389 6.55428 6.56431 6.67588 6.81380 6.98666 7.03967 7.07494 7.41429 7.45151 7.53058 7.76572 7.85818 8.45982 9.29149 9.92744 10.42154 11.36942 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.003973 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.870683 B = 7045.740101 C = 7399.384164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.595 5.595 3 C -0.251 4.251 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.909 5.909 7 Si 0.905 3.095 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.184 3.816 12 H 0.069 0.931 13 C -0.133 4.133 14 C -0.112 4.112 15 C 0.055 3.945 16 N -0.530 5.530 17 C 0.091 3.909 18 C -0.067 4.067 19 C -0.116 4.116 20 C -0.124 4.124 21 C -0.127 4.127 22 C -0.122 4.122 23 C -0.099 4.099 24 C 0.047 3.953 25 H 0.026 0.974 26 H 0.042 0.958 27 H -0.003 1.003 28 H 0.251 0.749 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.038 0.962 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.026 0.974 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.095 -18.236 1.616 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.317 5.317 3 C -0.381 4.381 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.555 5.555 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.075 3.925 12 H 0.087 0.913 13 C -0.173 4.173 14 C -0.150 4.150 15 C -0.072 4.072 16 N -0.255 5.255 17 C -0.037 4.037 18 C -0.068 4.068 19 C -0.135 4.135 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.140 4.140 23 C -0.117 4.117 24 C -0.082 4.082 25 H 0.044 0.956 26 H 0.061 0.939 27 H 0.015 0.985 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.044 0.956 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.462 -17.936 1.651 18.822 hybrid contribution -0.602 0.757 0.018 0.967 sum 4.860 -17.179 1.669 17.931 Atomic orbital electron populations 1.20744 0.82922 0.95430 0.99007 1.43964 1.01757 1.00319 1.85625 1.19263 0.98471 0.85486 1.34862 0.91364 1.25035 0.97859 0.98512 0.98282 1.70066 1.18789 1.27104 1.39513 0.86246 0.78858 0.84156 0.77249 1.21585 1.21813 1.20467 1.20315 0.96473 0.85514 0.90178 0.91282 1.22132 0.99625 0.95071 1.00463 1.21530 1.01188 0.96641 0.95666 1.22130 0.97607 0.96548 0.90964 1.62004 1.58464 1.04296 1.00779 1.21052 0.95524 0.93121 0.94009 1.19854 0.95333 0.94285 0.97300 1.21070 0.99736 0.92780 0.99868 1.21073 0.94405 0.98551 1.00151 1.21095 0.96560 0.97529 0.99349 1.21144 0.99545 0.93175 1.00176 1.21077 0.93211 0.98662 0.98757 1.22830 0.95069 0.88358 1.01910 0.95561 0.93936 0.98492 0.93850 0.92132 0.92852 0.91511 0.92436 0.95637 0.91140 0.89946 0.94388 0.86481 0.86422 0.86501 0.86279 0.85858 0.95562 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.08 7.99 59.84 0.48 4.56 16 2 N -0.59 -15.05 2.82 -173.34 -0.49 -15.54 16 3 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 4 H 0.07 1.86 7.82 -52.48 -0.41 1.45 16 5 C 0.00 0.03 5.12 -17.43 -0.09 -0.06 16 6 N -0.91 -26.69 10.66 55.49 0.59 -26.10 16 7 Si 0.90 22.08 29.57 -169.99 -5.03 17.05 16 8 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 C 0.18 3.87 2.75 -67.81 -0.19 3.68 16 12 H 0.07 1.53 7.87 -51.93 -0.41 1.12 16 13 C -0.13 -2.41 5.32 -26.56 -0.14 -2.55 16 14 C -0.11 -1.67 6.09 -26.66 -0.16 -1.83 16 15 C 0.06 0.81 5.17 -3.84 -0.02 0.79 16 16 N -0.53 -8.49 4.65 -236.12 -1.10 -9.59 16 17 C 0.09 1.26 5.12 -4.97 -0.03 1.23 16 18 C -0.07 -0.85 4.89 -104.62 -0.51 -1.36 16 19 C -0.12 -1.32 7.90 -39.58 -0.31 -1.64 16 20 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 21 C -0.13 -1.27 10.05 -39.59 -0.40 -1.66 16 22 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 23 C -0.10 -1.19 9.70 -39.58 -0.38 -1.58 16 24 C 0.05 0.91 4.76 -3.84 -0.02 0.89 16 25 H 0.03 0.71 7.41 -51.93 -0.38 0.32 16 26 H 0.04 1.14 7.24 -51.93 -0.38 0.77 16 27 H 0.00 -0.07 6.39 -51.92 -0.33 -0.41 16 28 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.05 0.98 6.58 -51.93 -0.34 0.64 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.95 5.77 -51.92 -0.30 0.65 16 35 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 36 H 0.04 0.51 8.06 -51.93 -0.42 0.09 16 37 H 0.12 1.22 7.97 -52.49 -0.42 0.80 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 40 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 41 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 42 H 0.03 0.52 7.65 -51.93 -0.40 0.12 16 43 H 0.07 1.54 8.01 -51.93 -0.42 1.12 16 LS Contribution 335.35 15.07 5.05 5.05 Total: -1.00 -29.56 335.35 -10.81 -40.37 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -7.13 Total: -1.25 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -2.71 Total: -10.00 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.99 Total: -51.23 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.03 Total: 17.05 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.56 -10.81 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174944881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.943 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds