Wall clock time and date at job start Mon Mar 30 2020 01:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36937 * 119.99774 * 2 1 4 4 H 1.08006 * 119.99777 * 203.25492 * 3 2 1 5 5 C 1.38810 * 120.00162 * 23.25351 * 3 2 1 6 6 N 1.31617 * 119.99928 * 11.64826 * 5 3 2 7 7 Si 1.86799 * 119.99831 * 191.65696 * 5 3 2 8 8 H 1.48500 * 109.47478 * 89.99943 * 7 5 3 9 9 H 1.48506 * 109.46883 * 209.99906 * 7 5 3 10 10 H 1.48494 * 109.47206 * 329.99625 * 7 5 3 11 11 C 1.46494 * 120.00106 * 179.97438 * 2 1 3 12 12 H 1.08999 * 109.50286 * 179.97438 * 11 2 1 13 13 C 1.53210 * 109.52630 * 59.84329 * 11 2 1 14 14 C 1.53115 * 109.11694 * 182.40297 * 13 11 2 15 15 C 1.53032 * 109.31290 * 57.63377 * 14 13 11 16 16 N 1.46840 * 109.52740 * 300.80384 * 15 14 13 17 17 C 1.46903 * 111.00372 * 185.83788 * 16 15 14 18 18 C 1.50699 * 109.46986 * 66.04132 * 17 16 15 19 19 C 1.38238 * 120.00343 * 269.72674 * 18 17 16 20 20 C 1.38231 * 119.99981 * 179.78746 * 19 18 17 21 21 C 1.38235 * 119.99978 * 0.44522 * 20 19 18 22 22 C 1.38230 * 120.00133 * 359.81097 * 21 20 19 23 23 C 1.38235 * 120.00163 * 359.97438 * 22 21 20 24 24 C 1.46843 * 111.19936 * 61.73791 * 16 15 14 25 25 H 1.09006 * 109.47379 * 274.00771 * 1 2 3 26 26 H 1.08994 * 109.47371 * 34.01141 * 1 2 3 27 27 H 1.09008 * 109.47078 * 154.01280 * 1 2 3 28 28 H 0.97000 * 120.00024 * 179.97438 * 6 5 3 29 29 H 1.09000 * 109.57060 * 62.48863 * 13 11 2 30 30 H 1.08997 * 109.51115 * 302.27439 * 13 11 2 31 31 H 1.09001 * 109.50617 * 297.67471 * 14 13 11 32 32 H 1.08998 * 109.50132 * 177.60024 * 14 13 11 33 33 H 1.09002 * 109.46041 * 60.81703 * 15 14 13 34 34 H 1.09007 * 109.46561 * 180.78405 * 15 14 13 35 35 H 1.08994 * 109.47297 * 186.04289 * 17 16 15 36 36 H 1.09003 * 109.47130 * 306.04599 * 17 16 15 37 37 H 1.07998 * 119.99829 * 0.02562 * 19 18 17 38 38 H 1.07999 * 120.00023 * 180.27415 * 20 19 18 39 39 H 1.08005 * 119.99617 * 179.83047 * 21 20 19 40 40 H 1.08009 * 119.99904 * 180.02562 * 22 21 20 41 41 H 1.07992 * 119.99850 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.46222 * 58.27626 * 24 16 15 43 43 H 1.09006 * 109.46423 * 178.25446 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1638 1.2239 -0.3693 5 6 1.5401 2.3392 0.4746 6 7 0.4023 2.2597 1.1314 7 14 2.3346 4.0041 0.1808 8 1 1.8414 4.5688 -1.1010 9 1 1.9846 4.9229 1.2938 10 1 3.8095 3.8442 0.1163 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8253 -2.0754 -1.2476 14 6 2.5494 -3.4239 -1.2075 15 6 2.1701 -4.1640 0.0772 16 7 2.5470 -3.3518 1.2410 17 6 2.3246 -4.0893 2.4920 18 6 3.2648 -5.2653 2.5557 19 6 2.8772 -6.4889 2.0424 20 6 3.7413 -7.5664 2.0969 21 6 4.9896 -7.4228 2.6731 22 6 5.3753 -6.2006 3.1912 23 6 4.5129 -5.1219 3.1327 24 6 1.8283 -2.0713 1.2502 25 1 -0.3634 0.0718 1.0252 26 1 -0.3634 0.8518 -0.5748 27 1 -0.3634 -0.9238 -0.4503 28 1 -0.0234 3.0656 1.4634 29 1 2.1261 -1.5267 -2.1401 30 1 0.7481 -2.2408 -1.2664 31 1 3.6267 -3.2593 -1.2279 32 1 2.2560 -4.0204 -2.0713 33 1 1.0946 -4.3405 0.0905 34 1 2.6952 -5.1185 0.1150 35 1 2.5093 -3.4301 3.3401 36 1 1.2949 -4.4452 2.5258 37 1 1.9006 -6.6019 1.5952 38 1 3.4401 -8.5212 1.6919 39 1 5.6637 -8.2654 2.7182 40 1 6.3508 -6.0883 3.6410 41 1 4.8140 -4.1672 3.5378 42 1 0.7544 -2.2577 1.2580 43 1 2.1052 -1.5057 2.1399 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174944881.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:16 Heat of formation + Delta-G solvation = 33.640488 kcal Electronic energy + Delta-G solvation = -21387.446019 eV Core-core repulsion = 18432.149674 eV Total energy + Delta-G solvation = -2955.296345 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.69359 -39.51919 -37.09656 -34.68738 -33.02464 -31.93629 -31.72903 -30.05230 -28.04315 -27.20880 -25.19776 -23.92007 -23.44140 -22.66180 -21.60369 -20.20554 -18.77202 -17.61833 -17.21698 -16.62988 -16.32126 -16.15662 -15.70416 -15.37155 -15.07979 -14.96548 -14.66309 -14.33095 -14.20399 -13.91602 -13.51312 -13.48263 -13.33529 -12.84979 -12.81877 -12.68734 -12.46841 -12.15513 -12.11002 -12.03167 -11.89981 -11.78949 -11.51799 -11.34728 -11.16189 -10.61943 -9.74054 -9.66021 -9.22769 -8.76157 -7.82118 -5.31232 0.47713 0.57044 1.46497 1.47310 1.56480 2.49265 2.76566 3.19739 3.32204 3.70070 3.85623 3.95511 4.06311 4.09860 4.20111 4.23005 4.32235 4.39619 4.43259 4.50549 4.62490 4.69029 4.69324 4.76738 4.81292 4.86670 4.94254 5.02950 5.10096 5.16332 5.17281 5.22910 5.26555 5.46451 5.55739 5.62547 5.64592 5.68215 5.69266 5.78221 6.08794 6.19018 6.21637 6.35441 7.16057 7.88369 8.32533 9.20923 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.003973 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.870683 B = 7045.740101 C = 7399.384164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.611 5.611 3 C -0.263 4.263 4 H 0.068 0.932 5 C -0.052 4.052 6 N -0.939 5.939 7 Si 0.969 3.031 8 H -0.286 1.286 9 H -0.294 1.294 10 H -0.269 1.269 11 C 0.180 3.820 12 H 0.053 0.947 13 C -0.123 4.123 14 C -0.104 4.104 15 C 0.057 3.943 16 N -0.535 5.535 17 C 0.093 3.907 18 C -0.083 4.083 19 C -0.123 4.123 20 C -0.124 4.124 21 C -0.126 4.126 22 C -0.128 4.128 23 C -0.117 4.117 24 C 0.066 3.934 25 H 0.000 1.000 26 H 0.015 0.985 27 H 0.026 0.974 28 H 0.248 0.752 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.029 0.971 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.126 0.874 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.117 0.883 42 H 0.017 0.983 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.254 -20.657 0.805 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.333 5.333 3 C -0.393 4.393 4 H 0.086 0.914 5 C -0.247 4.247 6 N -0.586 5.586 7 Si 0.798 3.202 8 H -0.212 1.212 9 H -0.221 1.221 10 H -0.194 1.194 11 C 0.073 3.927 12 H 0.071 0.929 13 C -0.163 4.163 14 C -0.142 4.142 15 C -0.070 4.070 16 N -0.260 5.260 17 C -0.034 4.034 18 C -0.084 4.084 19 C -0.141 4.141 20 C -0.142 4.142 21 C -0.144 4.144 22 C -0.146 4.146 23 C -0.135 4.135 24 C -0.064 4.064 25 H 0.018 0.982 26 H 0.034 0.966 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.144 0.856 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.155 0.845 41 H 0.135 0.865 42 H 0.035 0.965 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.646 -20.400 0.831 21.471 hybrid contribution -0.903 1.393 0.292 1.686 sum 5.743 -19.007 1.123 19.887 Atomic orbital electron populations 1.20428 0.83043 0.95601 0.97125 1.44176 1.01951 1.01302 1.85900 1.19571 0.98613 0.86800 1.34338 0.91398 1.25792 0.98573 1.01852 0.98445 1.70232 1.20130 1.27577 1.40682 0.85230 0.78433 0.79769 0.76807 1.21236 1.22099 1.19371 1.20460 0.95110 0.84633 0.92542 0.92871 1.21980 0.99816 0.96312 0.98141 1.21508 1.00591 0.95013 0.97125 1.22188 0.98109 0.96841 0.89879 1.61950 1.57865 1.03664 1.02494 1.21020 0.96361 0.93434 0.92562 1.19751 0.95375 0.94261 0.99002 1.21222 1.00481 0.92574 0.99851 1.21411 0.94164 0.99167 0.99484 1.21472 0.96915 0.97946 0.98099 1.21409 1.00073 0.93046 1.00035 1.21180 0.93657 0.99217 0.99491 1.22398 0.94615 0.89793 0.99587 0.98210 0.96587 0.95585 0.94321 0.92816 0.93044 0.91709 0.89423 0.95246 0.89238 0.90917 0.93946 0.85564 0.83884 0.83844 0.84482 0.86517 0.96452 0.93590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.37 7.99 127.77 1.02 10.39 16 2 N -0.61 -31.62 2.82 -702.33 -1.98 -33.60 16 3 C -0.26 -14.90 9.59 84.03 0.81 -14.10 16 4 H 0.07 3.77 7.82 -2.91 -0.02 3.74 16 5 C -0.05 -2.96 5.12 84.86 0.43 -2.53 16 6 N -0.94 -56.73 10.66 21.65 0.23 -56.50 16 7 Si 0.97 46.06 29.57 68.60 2.03 48.09 16 8 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 9 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 C 0.18 7.65 2.75 45.08 0.12 7.78 16 12 H 0.05 2.41 7.87 -2.39 -0.02 2.39 16 13 C -0.12 -4.32 5.32 30.70 0.16 -4.15 16 14 C -0.10 -2.86 6.09 30.64 0.19 -2.67 16 15 C 0.06 1.54 5.17 86.33 0.45 1.99 16 16 N -0.53 -16.87 4.65 -900.94 -4.19 -21.06 16 17 C 0.09 2.58 5.12 85.56 0.44 3.02 16 18 C -0.08 -2.02 4.89 -19.86 -0.10 -2.11 16 19 C -0.12 -2.50 7.90 22.27 0.18 -2.33 16 20 C -0.12 -2.12 10.05 22.27 0.22 -1.89 16 21 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 22 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 23 C -0.12 -2.74 9.70 22.27 0.22 -2.52 16 24 C 0.07 2.57 4.76 86.33 0.41 2.98 16 25 H 0.00 -0.02 7.41 -2.38 -0.02 -0.04 16 26 H 0.02 0.86 7.24 -2.39 -0.02 0.85 16 27 H 0.03 1.15 6.39 -2.38 -0.02 1.13 16 28 H 0.25 14.52 8.31 -92.71 -0.77 13.74 16 29 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.05 1.82 6.58 -2.39 -0.02 1.80 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.09 2.13 5.77 -2.38 -0.01 2.12 16 35 H 0.07 2.10 7.93 -2.39 -0.02 2.08 16 36 H 0.04 1.12 8.06 -2.39 -0.02 1.10 16 37 H 0.13 2.28 7.97 -2.91 -0.02 2.25 16 38 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 39 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 41 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 42 H 0.02 0.70 7.65 -2.39 -0.02 0.68 16 43 H 0.05 2.02 8.01 -2.38 -0.02 2.00 16 Total: -1.00 -64.55 335.35 2.05 -62.50 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.96 Total: 10.81 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 5.00 Total: -10.24 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -5.93 Total: -111.16 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -64.55 2.05 -62.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174944881.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.136 kcal (2) G-P(sol) polarization free energy of solvation -64.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds