Wall clock time and date at job start Mon Mar 30 2020 01:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47470 * 2 1 4 4 C 1.36936 * 119.99959 * 264.51364 * 3 2 1 5 5 H 1.08000 * 119.99876 * 146.58511 * 4 3 2 6 6 C 1.38809 * 119.99947 * 326.57807 * 4 3 2 7 7 N 1.31620 * 120.00163 * 337.26046 * 6 4 3 8 8 Si 1.86804 * 120.00047 * 157.26393 * 6 4 3 9 9 H 1.48505 * 109.46954 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47264 * 119.99984 * 8 6 4 11 11 H 1.48500 * 109.46941 * 240.00226 * 8 6 4 12 12 C 1.46497 * 119.99977 * 84.50670 * 3 2 1 13 13 H 1.09003 * 110.29092 * 0.67604 * 12 3 2 14 14 C 1.54258 * 110.32802 * 238.54722 * 12 3 2 15 15 C 1.54377 * 105.06352 * 241.10346 * 14 12 3 16 16 N 1.48554 * 104.69904 * 336.08754 * 15 14 12 17 17 C 1.46904 * 111.00040 * 159.09626 * 16 15 14 18 18 C 1.50697 * 109.46874 * 69.87580 * 17 16 15 19 19 C 1.38234 * 119.99865 * 269.72349 * 18 17 16 20 20 C 1.38237 * 120.00089 * 179.77049 * 19 18 17 21 21 C 1.38240 * 119.99769 * 0.48060 * 20 19 18 22 22 C 1.38237 * 119.99709 * 359.79869 * 21 20 19 23 23 C 1.38232 * 120.00346 * 359.95145 * 22 21 20 24 24 C 1.48860 * 104.07717 * 39.46886 * 16 15 14 25 25 H 1.08998 * 109.46886 * 299.99844 * 1 2 3 26 26 H 1.09000 * 109.46999 * 59.99517 * 1 2 3 27 27 H 1.08996 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46762 * 239.99752 * 2 1 3 29 29 H 1.09000 * 109.46999 * 120.00483 * 2 1 3 30 30 H 0.96997 * 120.00265 * 180.02562 * 7 6 4 31 31 H 1.09005 * 110.32592 * 122.20726 * 14 12 3 32 32 H 1.09001 * 110.32297 * 0.02562 * 14 12 3 33 33 H 1.09001 * 110.41152 * 94.92611 * 15 14 12 34 34 H 1.09000 * 110.41464 * 217.24471 * 15 14 12 35 35 H 1.09001 * 109.46739 * 189.87622 * 17 16 15 36 36 H 1.09000 * 109.46851 * 309.87264 * 17 16 15 37 37 H 1.08003 * 120.00088 * 0.02562 * 19 18 17 38 38 H 1.07998 * 120.00272 * 180.25845 * 20 19 18 39 39 H 1.07994 * 119.99942 * 179.76897 * 21 20 19 40 40 H 1.07998 * 119.99759 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.00253 * 180.02562 * 23 22 21 42 42 H 1.08997 * 110.39339 * 201.75232 * 24 16 15 43 43 H 1.08997 * 110.49464 * 79.38438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3536 1.9888 -1.1805 5 1 2.1926 3.0493 -1.3067 6 6 2.9004 1.2419 -2.2148 7 7 3.5059 0.1024 -1.9551 8 14 2.7770 1.8539 -3.9755 9 1 2.0536 3.1506 -3.9992 10 1 4.1413 2.0374 -4.5325 11 1 2.0375 0.8600 -4.7943 12 6 2.1481 2.1122 1.2629 13 1 1.8516 1.4785 2.0987 14 6 1.2895 3.3933 1.2311 15 6 2.2936 4.5535 1.4016 16 7 3.4611 3.9438 2.0885 17 6 4.6709 4.7529 1.8889 18 6 4.5433 6.0444 2.6547 19 6 3.9868 7.1552 2.0487 20 6 3.8654 8.3387 2.7526 21 6 4.3096 8.4142 4.0596 22 6 4.8714 7.3050 4.6637 23 6 4.9881 6.1201 3.9614 24 6 3.5988 2.6061 1.4500 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8883 -0.4193 -2.6779 31 1 0.5727 3.3893 2.0523 32 1 0.7712 3.4781 0.2759 33 1 2.5879 4.9476 0.4289 34 1 1.8611 5.3434 2.0157 35 1 5.5399 4.2016 2.2483 36 1 4.7918 4.9700 0.8276 37 1 3.6431 7.0973 1.0264 38 1 3.4268 9.2053 2.2805 39 1 4.2182 9.3398 4.6083 40 1 5.2188 7.3640 5.6846 41 1 5.4266 5.2533 4.4336 42 1 4.1499 1.9288 2.1023 43 1 4.0980 2.6934 0.4850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179562500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:07 Heat of formation + Delta-G solvation = 51.305706 kcal Electronic energy + Delta-G solvation = -21471.833418 eV Core-core repulsion = 18517.303093 eV Total energy + Delta-G solvation = -2954.530324 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.42568 -38.10096 -35.35696 -32.62832 -31.30467 -30.83069 -29.84052 -28.76825 -27.02094 -25.10083 -23.84631 -22.50281 -21.39133 -20.91755 -20.20114 -19.36867 -16.70507 -16.32162 -15.56646 -15.33340 -15.00974 -14.87448 -14.38476 -13.76375 -13.49718 -13.34541 -13.21829 -12.97761 -12.54037 -12.37760 -12.00229 -11.87516 -11.65715 -11.37396 -11.14458 -10.94657 -10.84816 -10.68998 -10.61436 -10.53058 -10.35584 -10.19884 -9.90191 -9.65747 -9.48330 -8.84409 -8.69362 -8.46162 -7.92085 -6.59650 -5.79785 -3.31868 1.42487 1.47825 3.33098 3.42711 3.44484 3.82545 4.44486 4.66630 4.89863 4.96258 5.05562 5.17617 5.28545 5.39858 5.48413 5.56041 5.58495 5.69485 5.81880 5.85435 5.99226 6.11009 6.11668 6.14754 6.31489 6.39863 6.46538 6.52231 6.55165 6.56843 6.65216 6.69112 6.71030 6.78919 6.89877 6.95202 7.06682 7.07731 7.28781 7.40858 7.57504 7.76075 7.83130 8.50684 9.19543 9.84632 10.40378 11.20683 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.004604 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.232009 B = 6079.913594 C = 6605.258862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.139 3.861 3 N -0.578 5.578 4 C -0.249 4.249 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.887 5.887 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.291 1.291 11 H -0.288 1.288 12 C 0.174 3.826 13 H 0.057 0.943 14 C -0.136 4.136 15 C 0.042 3.958 16 N -0.509 5.509 17 C 0.080 3.920 18 C -0.064 4.064 19 C -0.113 4.113 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.124 4.124 23 C -0.102 4.102 24 C 0.023 3.977 25 H 0.032 0.968 26 H 0.047 0.953 27 H 0.033 0.967 28 H 0.099 0.901 29 H 0.019 0.981 30 H 0.253 0.747 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.039 0.961 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.045 0.955 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.118 0.882 41 H 0.121 0.879 42 H 0.063 0.937 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.685 10.875 9.715 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.013 3.987 3 N -0.298 5.298 4 C -0.378 4.378 5 H 0.078 0.922 6 C -0.191 4.191 7 N -0.530 5.530 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.218 1.218 11 H -0.214 1.214 12 C 0.065 3.935 13 H 0.075 0.925 14 C -0.176 4.176 15 C -0.086 4.086 16 N -0.233 5.233 17 C -0.048 4.048 18 C -0.064 4.064 19 C -0.132 4.132 20 C -0.141 4.141 21 C -0.147 4.147 22 C -0.142 4.142 23 C -0.121 4.121 24 C -0.106 4.106 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.116 0.884 29 H 0.037 0.963 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.063 0.937 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.134 0.866 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.082 0.918 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.704 10.681 10.167 14.763 hybrid contribution 0.117 0.415 -1.826 1.876 sum 0.820 11.096 8.341 13.906 Atomic orbital electron populations 1.22338 1.00969 0.98616 1.00338 1.20966 0.89697 0.86317 1.01757 1.44034 1.73500 1.11371 1.00908 1.18941 1.34927 0.93888 0.90080 0.92200 1.25043 0.97198 0.97910 0.98959 1.70008 1.36379 1.15728 1.30908 0.86405 0.77381 0.78435 0.85659 1.20220 1.21800 1.21450 1.21036 0.91324 0.91929 0.89219 0.92452 1.22791 0.97654 0.95819 1.01288 1.22986 0.92276 0.97235 0.96146 1.65536 1.02464 1.03147 1.52122 1.21194 0.94748 0.91370 0.97517 1.19866 0.97270 0.94756 0.94554 1.21114 0.99193 0.92805 1.00057 1.21086 1.00419 0.97736 0.94839 1.21077 0.99831 0.98454 0.95360 1.21108 1.00119 0.93304 0.99686 1.21036 0.99596 0.97530 0.93891 1.23679 1.00353 0.88475 0.98073 0.94867 0.93386 0.94814 0.88359 0.96255 0.93669 0.92911 0.90588 0.94315 0.91777 0.90337 0.93717 0.86357 0.86432 0.86574 0.86415 0.86082 0.91818 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 10.23 37.16 0.38 -2.90 16 2 C 0.14 3.23 5.91 -4.04 -0.02 3.20 16 3 N -0.58 -13.81 2.43 -164.09 -0.40 -14.21 16 4 C -0.25 -6.46 7.65 -15.06 -0.12 -6.58 16 5 H 0.06 1.58 7.23 -52.49 -0.38 1.20 16 6 C 0.01 0.23 4.91 -17.43 -0.09 0.14 16 7 N -0.89 -24.84 11.34 55.49 0.63 -24.21 16 8 Si 0.89 21.20 29.61 -169.99 -5.03 16.17 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.17 3.61 3.59 -66.55 -0.24 3.37 16 13 H 0.06 1.17 7.91 -51.93 -0.41 0.75 16 14 C -0.14 -2.54 6.34 -25.35 -0.16 -2.70 16 15 C 0.04 0.72 5.48 -2.19 -0.01 0.71 16 16 N -0.51 -8.87 5.37 -231.15 -1.24 -10.11 16 17 C 0.08 1.24 4.98 -4.97 -0.02 1.22 16 18 C -0.06 -0.90 5.09 -104.63 -0.53 -1.43 16 19 C -0.11 -1.49 8.75 -39.58 -0.35 -1.84 16 20 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.13 -1.41 10.05 -39.58 -0.40 -1.80 16 22 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 23 C -0.10 -1.31 9.70 -39.58 -0.38 -1.69 16 24 C 0.02 0.46 6.09 -2.01 -0.01 0.45 16 25 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.10 2.59 5.33 -51.93 -0.28 2.31 16 29 H 0.02 0.43 8.05 -51.93 -0.42 0.01 16 30 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.08 1.55 7.07 -51.93 -0.37 1.18 16 33 H 0.04 0.70 7.82 -51.93 -0.41 0.30 16 34 H 0.06 1.04 7.82 -51.93 -0.41 0.64 16 35 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 36 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 37 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 42 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.07 1.55 6.89 -51.93 -0.36 1.20 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -27.56 342.27 -10.85 -38.40 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -7.21 Total: 2.26 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: -2.75 Total: -13.46 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -1.01 Total: -48.53 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.56 -10.85 -38.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179562500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.708 kcal (2) G-P(sol) polarization free energy of solvation -27.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds