Wall clock time and date at job start Mon Mar 30 2020 01:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46495 * 109.47470 * 2 1 4 4 C 1.36936 * 119.99959 * 264.51364 * 3 2 1 5 5 H 1.08000 * 119.99876 * 146.58511 * 4 3 2 6 6 C 1.38809 * 119.99947 * 326.57807 * 4 3 2 7 7 N 1.31620 * 120.00163 * 337.26046 * 6 4 3 8 8 Si 1.86804 * 120.00047 * 157.26393 * 6 4 3 9 9 H 1.48505 * 109.46954 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47264 * 119.99984 * 8 6 4 11 11 H 1.48500 * 109.46941 * 240.00226 * 8 6 4 12 12 C 1.46497 * 119.99977 * 84.50670 * 3 2 1 13 13 H 1.09003 * 110.29092 * 0.67604 * 12 3 2 14 14 C 1.54258 * 110.32802 * 238.54722 * 12 3 2 15 15 C 1.54377 * 105.06352 * 241.10346 * 14 12 3 16 16 N 1.48554 * 104.69904 * 336.08754 * 15 14 12 17 17 C 1.46904 * 111.00040 * 159.09626 * 16 15 14 18 18 C 1.50697 * 109.46874 * 69.87580 * 17 16 15 19 19 C 1.38234 * 119.99865 * 269.72349 * 18 17 16 20 20 C 1.38237 * 120.00089 * 179.77049 * 19 18 17 21 21 C 1.38240 * 119.99769 * 0.48060 * 20 19 18 22 22 C 1.38237 * 119.99709 * 359.79869 * 21 20 19 23 23 C 1.38232 * 120.00346 * 359.95145 * 22 21 20 24 24 C 1.48860 * 104.07717 * 39.46886 * 16 15 14 25 25 H 1.08998 * 109.46886 * 299.99844 * 1 2 3 26 26 H 1.09000 * 109.46999 * 59.99517 * 1 2 3 27 27 H 1.08996 * 109.47197 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46762 * 239.99752 * 2 1 3 29 29 H 1.09000 * 109.46999 * 120.00483 * 2 1 3 30 30 H 0.96997 * 120.00265 * 180.02562 * 7 6 4 31 31 H 1.09005 * 110.32592 * 122.20726 * 14 12 3 32 32 H 1.09001 * 110.32297 * 0.02562 * 14 12 3 33 33 H 1.09001 * 110.41152 * 94.92611 * 15 14 12 34 34 H 1.09000 * 110.41464 * 217.24471 * 15 14 12 35 35 H 1.09001 * 109.46739 * 189.87622 * 17 16 15 36 36 H 1.09000 * 109.46851 * 309.87264 * 17 16 15 37 37 H 1.08003 * 120.00088 * 0.02562 * 19 18 17 38 38 H 1.07998 * 120.00272 * 180.25845 * 20 19 18 39 39 H 1.07994 * 119.99942 * 179.76897 * 21 20 19 40 40 H 1.07998 * 119.99759 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.00253 * 180.02562 * 23 22 21 42 42 H 1.08997 * 110.39339 * 201.75232 * 24 16 15 43 43 H 1.08997 * 110.49464 * 79.38438 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3536 1.9888 -1.1805 5 1 2.1926 3.0493 -1.3067 6 6 2.9004 1.2419 -2.2148 7 7 3.5059 0.1024 -1.9551 8 14 2.7770 1.8539 -3.9755 9 1 2.0536 3.1506 -3.9992 10 1 4.1413 2.0374 -4.5325 11 1 2.0375 0.8600 -4.7943 12 6 2.1481 2.1122 1.2629 13 1 1.8516 1.4785 2.0987 14 6 1.2895 3.3933 1.2311 15 6 2.2936 4.5535 1.4016 16 7 3.4611 3.9438 2.0885 17 6 4.6709 4.7529 1.8889 18 6 4.5433 6.0444 2.6547 19 6 3.9868 7.1552 2.0487 20 6 3.8654 8.3387 2.7526 21 6 4.3096 8.4142 4.0596 22 6 4.8714 7.3050 4.6637 23 6 4.9881 6.1201 3.9614 24 6 3.5988 2.6061 1.4500 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8883 -0.4193 -2.6779 31 1 0.5727 3.3893 2.0523 32 1 0.7712 3.4781 0.2759 33 1 2.5879 4.9476 0.4289 34 1 1.8611 5.3434 2.0157 35 1 5.5399 4.2016 2.2483 36 1 4.7918 4.9700 0.8276 37 1 3.6431 7.0973 1.0264 38 1 3.4268 9.2053 2.2805 39 1 4.2182 9.3398 4.6083 40 1 5.2188 7.3640 5.6846 41 1 5.4266 5.2533 4.4336 42 1 4.1499 1.9288 2.1023 43 1 4.0980 2.6934 0.4850 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179562500.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:06 Heat of formation + Delta-G solvation = 37.377763 kcal Electronic energy + Delta-G solvation = -21472.437379 eV Core-core repulsion = 18517.303093 eV Total energy + Delta-G solvation = -2955.134285 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.58901 -39.46707 -37.06237 -34.06331 -33.12007 -31.74430 -31.24862 -30.34654 -28.71544 -26.51842 -25.61139 -23.44335 -22.78360 -22.43954 -21.59921 -21.05642 -18.26208 -17.65455 -17.10971 -16.81266 -16.29415 -16.06056 -16.00040 -15.44275 -15.06800 -14.71344 -14.30147 -14.18073 -13.98522 -13.79565 -13.64486 -13.33985 -13.13537 -12.99471 -12.82216 -12.53603 -12.40906 -12.22188 -12.05691 -12.00399 -11.79374 -11.75200 -11.69944 -11.40427 -11.27108 -10.47132 -9.76911 -9.70541 -9.36577 -8.55565 -7.81230 -5.36144 0.47651 0.56155 1.41498 1.46289 1.54278 2.49735 2.82203 3.24832 3.26009 3.75643 3.80124 3.95395 4.00551 4.18966 4.20931 4.34273 4.34828 4.43006 4.52980 4.60129 4.62004 4.72741 4.80520 4.81578 4.89165 4.93837 4.96221 5.07080 5.14036 5.17317 5.19553 5.22561 5.30780 5.44583 5.53531 5.61710 5.66455 5.69758 5.75935 5.86717 5.95259 6.10041 6.18569 6.49217 7.19473 7.91957 8.41882 9.16122 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.022922 B = 0.004604 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.232009 B = 6079.913594 C = 6605.258862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.136 3.864 3 N -0.590 5.590 4 C -0.242 4.242 5 H 0.053 0.947 6 C -0.038 4.038 7 N -0.917 5.917 8 Si 0.946 3.054 9 H -0.271 1.271 10 H -0.295 1.295 11 H -0.289 1.289 12 C 0.167 3.833 13 H 0.065 0.935 14 C -0.127 4.127 15 C 0.051 3.949 16 N -0.500 5.500 17 C 0.083 3.917 18 C -0.083 4.083 19 C -0.128 4.128 20 C -0.126 4.126 21 C -0.126 4.126 22 C -0.125 4.125 23 C -0.113 4.113 24 C 0.034 3.966 25 H 0.046 0.954 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.022 0.978 30 H 0.249 0.751 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.030 0.970 37 H 0.113 0.887 38 H 0.139 0.861 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.126 0.874 42 H 0.064 0.936 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 12.782 11.417 17.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 N -0.311 5.311 4 C -0.372 4.372 5 H 0.071 0.929 6 C -0.235 4.235 7 N -0.562 5.562 8 Si 0.775 3.225 9 H -0.196 1.196 10 H -0.222 1.222 11 H -0.216 1.216 12 C 0.059 3.941 13 H 0.084 0.916 14 C -0.167 4.167 15 C -0.077 4.077 16 N -0.224 5.224 17 C -0.045 4.045 18 C -0.083 4.083 19 C -0.146 4.146 20 C -0.144 4.144 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.132 4.132 24 C -0.096 4.096 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.048 0.952 37 H 0.131 0.869 38 H 0.157 0.843 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.083 0.917 43 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -0.077 12.610 11.886 17.329 hybrid contribution 0.379 -0.114 -2.248 2.282 sum 0.303 12.496 9.638 15.784 Atomic orbital electron populations 1.22138 0.98260 1.00114 1.00241 1.20919 0.91816 0.85871 1.00389 1.44204 1.73787 1.11661 1.01436 1.19021 1.33583 0.93574 0.91041 0.92939 1.25616 0.97661 0.98393 1.01839 1.70124 1.37837 1.16879 1.31376 0.85547 0.76908 0.78030 0.82026 1.19578 1.22204 1.21603 1.21209 0.92069 0.92691 0.88122 0.91645 1.22674 0.97800 0.95010 1.01172 1.22916 0.91875 0.97070 0.95886 1.65553 1.03395 1.02246 1.51223 1.21166 0.93924 0.92287 0.97093 1.19740 0.99282 0.94033 0.95254 1.21185 0.99815 0.93482 1.00148 1.21377 1.00049 0.97678 0.95276 1.21477 0.98346 0.99464 0.95111 1.21441 0.99385 0.92646 1.00772 1.21191 0.99797 0.98657 0.93529 1.23441 0.99560 0.90246 0.96356 0.93484 0.94792 0.92539 0.91417 0.95974 0.94137 0.90782 0.92328 0.95623 0.89975 0.90064 0.95215 0.86917 0.84319 0.83638 0.83847 0.85636 0.91744 0.95188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 10.23 71.98 0.74 -5.05 16 2 C 0.14 6.35 5.91 86.38 0.51 6.86 16 3 N -0.59 -28.49 2.43 -673.07 -1.64 -30.13 16 4 C -0.24 -12.80 7.65 84.03 0.64 -12.16 16 5 H 0.05 2.83 7.23 -2.91 -0.02 2.81 16 6 C -0.04 -2.10 4.91 84.86 0.42 -1.68 16 7 N -0.92 -52.79 11.34 21.65 0.25 -52.55 16 8 Si 0.95 44.44 29.61 68.60 2.03 46.47 16 9 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 10 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 11 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 12 C 0.17 6.89 3.59 45.89 0.16 7.06 16 13 H 0.07 2.59 7.91 -2.39 -0.02 2.57 16 14 C -0.13 -4.63 6.34 31.49 0.20 -4.43 16 15 C 0.05 1.72 5.48 86.45 0.47 2.19 16 16 N -0.50 -17.29 5.37 -885.23 -4.75 -22.05 16 17 C 0.08 2.61 4.98 85.56 0.43 3.04 16 18 C -0.08 -2.25 5.09 -19.87 -0.10 -2.35 16 19 C -0.13 -3.23 8.75 22.27 0.19 -3.03 16 20 C -0.13 -2.59 10.05 22.27 0.22 -2.37 16 21 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 22 C -0.12 -2.43 10.05 22.27 0.22 -2.20 16 23 C -0.11 -2.70 9.70 22.27 0.22 -2.49 16 24 C 0.03 1.37 6.09 86.39 0.53 1.89 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.07 3.65 5.33 -2.38 -0.01 3.64 16 29 H 0.02 0.99 8.05 -2.39 -0.02 0.97 16 30 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 31 H 0.07 2.38 8.14 -2.38 -0.02 2.37 16 32 H 0.06 2.35 7.07 -2.39 -0.02 2.34 16 33 H 0.03 0.94 7.82 -2.39 -0.02 0.92 16 34 H 0.08 2.53 7.82 -2.39 -0.02 2.51 16 35 H 0.08 2.45 8.08 -2.39 -0.02 2.43 16 36 H 0.03 1.01 7.82 -2.39 -0.02 0.99 16 37 H 0.11 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 40 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.13 2.79 8.06 -2.91 -0.02 2.76 16 42 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.03 1.44 6.89 -2.39 -0.02 1.42 16 Total: -1.00 -59.48 342.27 1.92 -57.56 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.96 Total: 17.48 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 5.08 Total: -16.79 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -6.15 Total: -104.73 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -59.48 1.92 -57.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179562500.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.940 kcal (2) G-P(sol) polarization free energy of solvation -59.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds