Wall clock time and date at job start Mon Mar 30 2020 01:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00031 * 2 1 4 4 C 1.53000 * 109.47154 * 66.04350 * 3 2 1 5 5 N 1.46509 * 109.46881 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99839 * 270.00253 * 5 4 3 7 7 H 1.08000 * 120.00477 * 140.88480 * 6 5 4 8 8 C 1.38813 * 119.99763 * 320.88090 * 6 5 4 9 9 N 1.31629 * 119.99916 * 156.83403 * 8 6 5 10 10 Si 1.86797 * 120.00389 * 336.83248 * 8 6 5 11 11 H 1.48499 * 109.47120 * 92.01883 * 10 8 6 12 12 H 1.48503 * 109.47126 * 212.02511 * 10 8 6 13 13 H 1.48498 * 109.46953 * 332.02130 * 10 8 6 14 14 C 1.46499 * 119.99936 * 90.00006 * 5 4 3 15 15 C 1.52994 * 117.49881 * 184.01599 * 14 5 4 16 16 C 1.52995 * 117.49921 * 115.39146 * 14 5 4 17 17 C 1.46898 * 111.00230 * 236.04046 * 2 1 3 18 18 C 1.50700 * 109.47093 * 293.95998 * 17 2 1 19 19 C 1.38236 * 119.99670 * 269.72206 * 18 17 2 20 20 C 1.38235 * 119.99731 * 179.77000 * 19 18 17 21 21 C 1.38235 * 120.00223 * 0.50708 * 20 19 18 22 22 C 1.38238 * 119.99920 * 359.74782 * 21 20 19 23 23 C 1.38233 * 119.99684 * 359.97438 * 22 21 20 24 24 H 1.09008 * 109.46894 * 60.00263 * 1 2 3 25 25 H 1.09000 * 109.47593 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47697 * 300.00623 * 1 2 3 27 27 H 1.09001 * 109.47193 * 306.03930 * 3 2 1 28 28 H 1.09003 * 109.46680 * 186.04483 * 3 2 1 29 29 H 1.09000 * 109.47219 * 60.00232 * 4 3 2 30 30 H 1.08995 * 109.46884 * 299.99369 * 4 3 2 31 31 H 0.96992 * 119.99637 * 180.02562 * 9 8 6 32 32 H 1.09003 * 115.54923 * 329.72609 * 14 5 4 33 33 H 1.08999 * 117.49649 * 0.02562 * 15 14 5 34 34 H 1.08998 * 117.50019 * 145.01900 * 15 14 5 35 35 H 1.09001 * 117.50355 * 214.97750 * 16 14 5 36 36 H 1.08996 * 117.49669 * 359.97438 * 16 14 5 37 37 H 1.09008 * 109.46782 * 53.95337 * 17 2 1 38 38 H 1.08991 * 109.47515 * 173.95565 * 17 2 1 39 39 H 1.07996 * 120.00137 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.99999 * 180.23114 * 20 19 18 41 41 H 1.08001 * 120.00394 * 179.72674 * 21 20 19 42 42 H 1.07995 * 120.00342 * 179.97438 * 22 21 20 43 43 H 1.08010 * 119.99908 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 7 2.1570 3.4250 1.3184 6 6 3.4141 3.6752 1.8001 7 1 4.0496 4.3936 1.3037 8 6 3.8716 3.0056 2.9267 9 7 5.1648 2.8754 3.1350 10 14 2.6523 2.2893 4.1472 11 1 2.3601 0.8791 3.7852 12 1 3.2318 2.3400 5.5135 13 1 1.3956 3.0797 4.1130 14 6 1.3376 4.5247 0.8032 15 6 1.9765 5.9136 0.7430 16 6 0.9066 5.6085 1.7933 17 6 1.9955 -0.7661 -1.1375 18 6 1.6368 -2.2205 -0.9727 19 6 2.4964 -3.0729 -0.3053 20 6 2.1653 -4.4060 -0.1500 21 6 0.9795 -4.8889 -0.6711 22 6 0.1223 -4.0376 -1.3431 23 6 0.4508 -2.7033 -1.4934 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3635 0.5139 0.8899 27 1 1.5612 1.9273 -0.8310 28 1 3.0797 1.3443 -0.1082 29 1 2.0657 1.5016 2.1492 30 1 0.5471 2.0846 1.4263 31 1 5.4844 2.4071 3.9220 32 1 0.6366 4.2581 0.0122 33 1 3.0065 6.0090 1.0863 34 1 1.6960 6.5610 -0.0879 35 1 -0.0778 6.0553 1.6535 36 1 1.2323 5.5031 2.8281 37 1 1.5611 -0.3874 -2.0628 38 1 3.0796 -0.6612 -1.1755 39 1 3.4247 -2.6965 0.0983 40 1 2.8351 -5.0712 0.3747 41 1 0.7228 -5.9314 -0.5536 42 1 -0.8039 -4.4149 -1.7506 43 1 -0.2186 -2.0382 -2.0188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000297276678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:09 Heat of formation + Delta-G solvation = 86.679945 kcal Electronic energy + Delta-G solvation = -21130.786831 eV Core-core repulsion = 18177.790449 eV Total energy + Delta-G solvation = -2952.996382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.44184 -37.63226 -36.57114 -33.57262 -31.94479 -30.99603 -30.86197 -27.76228 -27.09868 -24.56357 -23.45223 -22.50609 -21.60442 -21.11711 -20.47866 -19.58024 -16.79561 -16.44472 -15.69007 -15.62037 -15.27812 -15.12909 -14.86913 -14.19169 -13.94002 -13.69502 -13.40286 -12.91733 -12.66270 -12.57076 -12.34075 -12.04352 -11.93705 -11.60832 -11.53374 -11.27075 -10.93099 -10.89447 -10.75308 -10.55359 -10.27107 -9.91297 -9.68089 -9.44209 -9.40900 -8.89121 -8.75592 -8.47420 -7.97373 -6.70149 -6.01977 -3.44887 1.35017 1.42269 3.37998 3.49666 3.55986 3.72839 4.34055 4.54202 4.82569 4.83472 4.86679 4.99733 5.02786 5.12021 5.29225 5.36095 5.49908 5.52991 5.60201 5.69766 5.74456 5.78429 5.89939 5.95567 6.03416 6.04403 6.07080 6.12003 6.19369 6.31854 6.42786 6.45051 6.48725 6.51392 6.69081 6.75815 6.85708 6.93527 7.01485 7.12308 7.39000 7.44691 8.05758 8.39814 8.98927 9.69988 10.10306 11.12608 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020939 B = 0.004682 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.866098 B = 5978.614677 C = 6674.252024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.043 3.957 4 C 0.144 3.856 5 N -0.572 5.572 6 C -0.274 4.274 7 H 0.081 0.919 8 C 0.045 3.955 9 N -0.894 5.894 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.302 1.302 13 H -0.269 1.269 14 C 0.120 3.880 15 C -0.188 4.188 16 C -0.224 4.224 17 C 0.092 3.908 18 C -0.069 4.069 19 C -0.098 4.098 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.125 4.125 23 C -0.116 4.116 24 H 0.020 0.980 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.264 0.736 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.038 0.962 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.812 -10.610 -9.003 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.260 5.260 3 C -0.086 4.086 4 C 0.018 3.982 5 N -0.291 5.291 6 C -0.403 4.403 7 H 0.099 0.901 8 C -0.157 4.157 9 N -0.534 5.534 10 Si 0.700 3.300 11 H -0.204 1.204 12 H -0.230 1.230 13 H -0.194 1.194 14 C 0.011 3.989 15 C -0.227 4.227 16 C -0.265 4.265 17 C -0.036 4.036 18 C -0.070 4.070 19 C -0.116 4.116 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.143 4.143 23 C -0.134 4.134 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.136 0.864 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.475 -10.890 -8.455 16.729 hybrid contribution -0.888 0.033 0.126 0.897 sum -10.363 -10.858 -8.329 17.165 Atomic orbital electron populations 1.22489 0.88242 1.01558 1.00545 1.61979 1.07422 1.15084 1.41545 1.22836 1.01018 0.85461 0.99308 1.21181 0.96091 0.85243 0.95696 1.43663 1.14655 0.99562 1.71262 1.18687 0.88141 1.26001 1.07428 0.90125 1.25475 0.95276 0.97956 0.96956 1.69873 1.12713 1.42524 1.28298 0.87047 0.82702 0.79233 0.80978 1.20433 1.22995 1.19351 1.21151 0.96304 0.84459 0.96969 1.23050 0.99493 0.99441 1.00673 1.23366 0.97397 1.08220 0.97492 1.21070 1.00869 0.89446 0.92188 1.19853 0.94461 0.95350 0.97305 1.21122 0.99868 0.93122 0.97507 1.21158 0.97093 0.95741 1.00004 1.21099 0.94912 0.99511 0.98973 1.21066 0.99554 0.93741 0.99942 1.21054 0.96482 0.95516 1.00387 0.96106 0.91606 0.91230 0.95692 0.89977 0.91475 0.94329 0.92612 0.89369 0.87888 0.90581 0.90909 0.89290 0.94354 0.89762 0.85722 0.86220 0.86487 0.86440 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.97 60.06 0.54 0.83 16 2 N -0.54 -8.97 4.75 -244.37 -1.16 -10.13 16 3 C 0.04 0.82 5.28 -3.83 -0.02 0.80 16 4 C 0.14 3.11 4.49 -4.04 -0.02 3.09 16 5 N -0.57 -13.46 2.38 -165.66 -0.39 -13.85 16 6 C -0.27 -7.49 8.93 -15.06 -0.13 -7.63 16 7 H 0.08 2.38 6.85 -52.49 -0.36 2.02 16 8 C 0.05 1.28 5.28 -17.43 -0.09 1.19 16 9 N -0.89 -26.92 13.97 55.49 0.78 -26.15 16 10 Si 0.87 22.35 25.32 -169.99 -4.30 18.04 16 11 H -0.28 -7.01 6.52 56.52 0.37 -6.64 16 12 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 13 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.12 2.43 6.57 -67.94 -0.45 1.99 16 15 C -0.19 -3.62 9.80 -26.73 -0.26 -3.88 16 16 C -0.22 -4.34 10.35 -26.73 -0.28 -4.62 16 17 C 0.09 1.32 5.12 -4.98 -0.03 1.29 16 18 C -0.07 -0.92 4.89 -104.62 -0.51 -1.44 16 19 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 20 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 21 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 22 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 23 C -0.12 -1.36 7.90 -39.58 -0.31 -1.68 16 24 H 0.02 0.27 8.14 -51.92 -0.42 -0.15 16 25 H 0.07 0.88 5.89 -51.93 -0.31 0.58 16 26 H 0.07 1.05 6.47 -51.93 -0.34 0.71 16 27 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 28 H 0.08 1.73 7.93 -51.93 -0.41 1.32 16 29 H 0.07 1.64 3.45 -51.93 -0.18 1.46 16 30 H 0.04 0.77 6.48 -51.93 -0.34 0.43 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 33 H 0.10 2.23 6.44 -51.93 -0.33 1.90 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.94 8.14 -51.93 -0.42 1.52 16 37 H 0.04 0.51 8.07 -51.92 -0.42 0.09 16 38 H 0.08 1.22 7.87 -51.93 -0.41 0.82 16 39 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.12 1.15 8.06 -52.48 -0.42 0.72 16 41 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 1.22 7.98 -52.48 -0.42 0.80 16 LS Contribution 341.38 15.07 5.14 5.14 Total: -1.00 -29.95 341.38 -9.98 -39.93 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.91 Total: 4.02 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -3.14 Total: -17.01 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.78 Total: -50.13 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.30 Total: 18.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.95 -9.98 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297276678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.609 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds