Wall clock time and date at job start Mon Mar 30 2020 01:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46898 * 111.00031 * 2 1 4 4 C 1.53000 * 109.47154 * 66.04350 * 3 2 1 5 5 N 1.46509 * 109.46881 * 179.97438 * 4 3 2 6 6 C 1.36931 * 119.99839 * 270.00253 * 5 4 3 7 7 H 1.08000 * 120.00477 * 140.88480 * 6 5 4 8 8 C 1.38813 * 119.99763 * 320.88090 * 6 5 4 9 9 N 1.31629 * 119.99916 * 156.83403 * 8 6 5 10 10 Si 1.86797 * 120.00389 * 336.83248 * 8 6 5 11 11 H 1.48499 * 109.47120 * 92.01883 * 10 8 6 12 12 H 1.48503 * 109.47126 * 212.02511 * 10 8 6 13 13 H 1.48498 * 109.46953 * 332.02130 * 10 8 6 14 14 C 1.46499 * 119.99936 * 90.00006 * 5 4 3 15 15 C 1.52994 * 117.49881 * 184.01599 * 14 5 4 16 16 C 1.52995 * 117.49921 * 115.39146 * 14 5 4 17 17 C 1.46898 * 111.00230 * 236.04046 * 2 1 3 18 18 C 1.50700 * 109.47093 * 293.95998 * 17 2 1 19 19 C 1.38236 * 119.99670 * 269.72206 * 18 17 2 20 20 C 1.38235 * 119.99731 * 179.77000 * 19 18 17 21 21 C 1.38235 * 120.00223 * 0.50708 * 20 19 18 22 22 C 1.38238 * 119.99920 * 359.74782 * 21 20 19 23 23 C 1.38233 * 119.99684 * 359.97438 * 22 21 20 24 24 H 1.09008 * 109.46894 * 60.00263 * 1 2 3 25 25 H 1.09000 * 109.47593 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47697 * 300.00623 * 1 2 3 27 27 H 1.09001 * 109.47193 * 306.03930 * 3 2 1 28 28 H 1.09003 * 109.46680 * 186.04483 * 3 2 1 29 29 H 1.09000 * 109.47219 * 60.00232 * 4 3 2 30 30 H 1.08995 * 109.46884 * 299.99369 * 4 3 2 31 31 H 0.96992 * 119.99637 * 180.02562 * 9 8 6 32 32 H 1.09003 * 115.54923 * 329.72609 * 14 5 4 33 33 H 1.08999 * 117.49649 * 0.02562 * 15 14 5 34 34 H 1.08998 * 117.50019 * 145.01900 * 15 14 5 35 35 H 1.09001 * 117.50355 * 214.97750 * 16 14 5 36 36 H 1.08996 * 117.49669 * 359.97438 * 16 14 5 37 37 H 1.09008 * 109.46782 * 53.95337 * 17 2 1 38 38 H 1.08991 * 109.47515 * 173.95565 * 17 2 1 39 39 H 1.07996 * 120.00137 * 0.02562 * 19 18 17 40 40 H 1.08006 * 119.99999 * 180.23114 * 20 19 18 41 41 H 1.08001 * 120.00394 * 179.72674 * 21 20 19 42 42 H 1.07995 * 120.00342 * 179.97438 * 22 21 20 43 43 H 1.08010 * 119.99908 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 7 2.1570 3.4250 1.3184 6 6 3.4141 3.6752 1.8001 7 1 4.0496 4.3936 1.3037 8 6 3.8716 3.0056 2.9267 9 7 5.1648 2.8754 3.1350 10 14 2.6523 2.2893 4.1472 11 1 2.3601 0.8791 3.7852 12 1 3.2318 2.3400 5.5135 13 1 1.3956 3.0797 4.1130 14 6 1.3376 4.5247 0.8032 15 6 1.9765 5.9136 0.7430 16 6 0.9066 5.6085 1.7933 17 6 1.9955 -0.7661 -1.1375 18 6 1.6368 -2.2205 -0.9727 19 6 2.4964 -3.0729 -0.3053 20 6 2.1653 -4.4060 -0.1500 21 6 0.9795 -4.8889 -0.6711 22 6 0.1223 -4.0376 -1.3431 23 6 0.4508 -2.7033 -1.4934 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3635 0.5139 0.8899 27 1 1.5612 1.9273 -0.8310 28 1 3.0797 1.3443 -0.1082 29 1 2.0657 1.5016 2.1492 30 1 0.5471 2.0846 1.4263 31 1 5.4844 2.4071 3.9220 32 1 0.6366 4.2581 0.0122 33 1 3.0065 6.0090 1.0863 34 1 1.6960 6.5610 -0.0879 35 1 -0.0778 6.0553 1.6535 36 1 1.2323 5.5031 2.8281 37 1 1.5611 -0.3874 -2.0628 38 1 3.0796 -0.6612 -1.1755 39 1 3.4247 -2.6965 0.0983 40 1 2.8351 -5.0712 0.3747 41 1 0.7228 -5.9314 -0.5536 42 1 -0.8039 -4.4149 -1.7506 43 1 -0.2186 -2.0382 -2.0188 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000297276678.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:08 Heat of formation + Delta-G solvation = 69.642242 kcal Electronic energy + Delta-G solvation = -21131.525641 eV Core-core repulsion = 18177.790449 eV Total energy + Delta-G solvation = -2953.735192 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.41519 -39.19541 -37.93008 -35.31581 -33.64009 -32.37966 -31.77212 -29.35971 -28.21319 -26.35438 -24.94708 -23.39744 -23.11045 -22.42518 -21.64666 -21.39367 -18.45756 -17.59405 -17.36398 -17.28828 -16.48614 -16.25850 -16.17074 -15.60177 -15.33151 -15.13846 -14.61894 -14.26860 -14.13426 -14.04324 -13.66553 -13.52328 -13.34040 -13.13661 -12.71427 -12.70481 -12.55604 -12.39244 -12.06796 -11.91639 -11.81803 -11.68115 -11.45571 -11.28295 -10.97819 -10.59673 -9.77491 -9.69031 -9.23083 -8.61263 -8.22719 -5.60816 0.44914 0.53757 1.31636 1.37586 1.48481 2.40361 2.67894 2.98392 3.13566 3.34197 3.48827 3.83680 3.96894 4.11758 4.19385 4.25413 4.27761 4.29961 4.37681 4.39867 4.46361 4.55118 4.61927 4.63015 4.67488 4.75933 4.82598 4.93454 4.97760 5.02744 5.10122 5.14030 5.19535 5.21694 5.31573 5.53852 5.58950 5.64908 5.75376 5.93493 6.07425 6.16065 6.18213 6.21347 6.99594 7.62772 8.03975 8.96191 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020939 B = 0.004682 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.866098 B = 5978.614677 C = 6674.252024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.554 5.554 3 C 0.061 3.939 4 C 0.143 3.857 5 N -0.586 5.586 6 C -0.253 4.253 7 H 0.048 0.952 8 C -0.007 4.007 9 N -0.942 5.942 10 Si 0.931 3.069 11 H -0.273 1.273 12 H -0.310 1.310 13 H -0.263 1.263 14 C 0.104 3.896 15 C -0.185 4.185 16 C -0.213 4.213 17 C 0.096 3.904 18 C -0.086 4.086 19 C -0.122 4.122 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.119 4.119 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.049 0.951 29 H 0.038 0.962 30 H 0.062 0.938 31 H 0.262 0.738 32 H 0.123 0.877 33 H 0.068 0.932 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.111 0.889 40 H 0.134 0.866 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.321 -11.634 -10.342 20.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.278 5.278 3 C -0.069 4.069 4 C 0.018 3.982 5 N -0.306 5.306 6 C -0.383 4.383 7 H 0.065 0.935 8 C -0.205 4.205 9 N -0.585 5.585 10 Si 0.760 3.240 11 H -0.200 1.200 12 H -0.238 1.238 13 H -0.187 1.187 14 C -0.004 4.004 15 C -0.223 4.223 16 C -0.254 4.254 17 C -0.031 4.031 18 C -0.086 4.086 19 C -0.140 4.140 20 C -0.148 4.148 21 C -0.144 4.144 22 C -0.142 4.142 23 C -0.138 4.138 24 H 0.056 0.944 25 H 0.096 0.904 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.141 0.859 33 H 0.086 0.914 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.152 0.848 41 H 0.162 0.838 42 H 0.164 0.836 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -13.027 -11.913 -9.814 20.197 hybrid contribution 0.182 0.346 0.435 0.585 sum -12.845 -11.566 -9.379 19.666 Atomic orbital electron populations 1.22502 0.86502 1.02519 1.00995 1.61893 1.09092 1.13603 1.43252 1.22432 0.99118 0.87103 0.98226 1.21169 0.96973 0.84110 0.95948 1.43759 1.13952 1.01457 1.71450 1.18534 0.89442 1.23936 1.06395 0.93475 1.25990 0.96360 0.99455 0.98679 1.69983 1.14421 1.45020 1.29073 0.86073 0.80714 0.78779 0.78407 1.20048 1.23831 1.18688 1.21501 0.96927 0.83775 0.98162 1.23032 0.97802 0.99577 1.01876 1.23342 0.99062 1.07427 0.95546 1.21017 1.00028 0.90179 0.91875 1.19814 0.95599 0.94547 0.98677 1.21194 0.99875 0.94333 0.98647 1.21396 0.98036 0.95197 1.00154 1.21474 0.94142 1.00950 0.97874 1.21441 1.00451 0.93191 0.99130 1.21242 0.95900 0.96487 1.00143 0.94386 0.90449 0.91846 0.94319 0.93284 0.94399 0.91979 0.92859 0.85903 0.91364 0.86861 0.87039 0.92356 0.92972 0.91284 0.87128 0.84770 0.83784 0.83615 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 8.97 127.69 1.15 1.74 16 2 N -0.55 -18.02 4.75 -927.05 -4.41 -22.43 16 3 C 0.06 2.29 5.28 86.30 0.46 2.74 16 4 C 0.14 6.07 4.49 86.38 0.39 6.46 16 5 N -0.59 -27.34 2.38 -678.04 -1.61 -28.95 16 6 C -0.25 -14.27 8.93 84.03 0.75 -13.52 16 7 H 0.05 2.94 6.85 -2.91 -0.02 2.92 16 8 C -0.01 -0.44 5.28 84.86 0.45 0.01 16 9 N -0.94 -59.26 13.97 21.65 0.30 -58.96 16 10 Si 0.93 47.59 25.32 68.60 1.74 49.33 16 11 H -0.27 -13.67 6.52 99.48 0.65 -13.02 16 12 H -0.31 -16.04 7.11 99.48 0.71 -15.33 16 13 H -0.26 -12.97 7.11 99.48 0.71 -12.26 16 14 C 0.10 3.97 6.57 44.99 0.30 4.27 16 15 C -0.18 -6.81 9.80 30.59 0.30 -6.51 16 16 C -0.21 -7.74 10.35 30.59 0.32 -7.42 16 17 C 0.10 2.71 5.12 85.56 0.44 3.15 16 18 C -0.09 -2.21 4.89 -19.87 -0.10 -2.31 16 19 C -0.12 -3.22 9.70 22.27 0.22 -3.00 16 20 C -0.13 -2.83 10.05 22.27 0.22 -2.60 16 21 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 22 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.12 -2.50 7.90 22.27 0.18 -2.33 16 24 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 25 H 0.08 1.86 5.89 -2.39 -0.01 1.85 16 26 H 0.06 1.74 6.47 -2.38 -0.02 1.72 16 27 H 0.04 1.33 8.12 -2.39 -0.02 1.31 16 28 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 29 H 0.04 1.84 3.45 -2.39 -0.01 1.84 16 30 H 0.06 2.34 6.48 -2.39 -0.02 2.32 16 31 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 32 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 33 H 0.07 3.01 6.44 -2.39 -0.02 3.00 16 34 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 35 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.05 1.30 8.07 -2.38 -0.02 1.28 16 38 H 0.07 2.10 7.87 -2.39 -0.02 2.08 16 39 H 0.11 3.10 8.06 -2.91 -0.02 3.07 16 40 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 42 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 43 H 0.13 2.31 7.98 -2.91 -0.02 2.28 16 Total: -1.00 -67.09 341.38 2.44 -64.66 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.91 Total: 19.77 kcal Atomic # 6 Polarization: -28.92 SS G_CDS: 5.50 Total: -23.42 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -5.72 Total: -110.34 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.74 Total: 49.33 kcal Total: -67.09 2.44 -64.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000297276678.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.301 kcal (2) G-P(sol) polarization free energy of solvation -67.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds