Wall clock time and date at job start Mon Mar 30 2020 01:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47281 * 2 1 4 4 C 1.53003 * 109.47423 * 120.00545 * 2 1 3 5 5 C 1.50694 * 109.47566 * 182.32988 * 4 2 1 6 6 H 1.08001 * 119.99970 * 5.19701 * 5 4 2 7 7 C 1.37879 * 120.00033 * 185.20753 * 5 4 2 8 8 N 1.31508 * 119.99862 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99709 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47360 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47278 * 119.99658 * 9 7 5 12 12 H 1.48507 * 109.46714 * 239.99280 * 9 7 5 13 13 N 1.46902 * 109.47144 * 240.00316 * 2 1 3 14 14 C 1.46846 * 111.00225 * 300.98807 * 13 2 1 15 15 C 1.53033 * 109.52450 * 185.83896 * 14 13 2 16 16 C 1.53120 * 109.27994 * 300.82042 * 15 14 13 17 17 C 1.53124 * 109.15550 * 57.65697 * 16 15 14 18 18 H 1.08996 * 109.50892 * 62.32919 * 17 16 15 19 19 C 1.50704 * 109.50073 * 182.40407 * 17 16 15 20 20 C 1.38656 * 120.78763 * 240.00223 * 19 17 16 21 21 C 1.38203 * 119.15988 * 179.97438 * 20 19 17 22 22 N 1.31873 * 120.76346 * 0.24892 * 21 20 19 23 23 C 1.31865 * 121.72601 * 359.48111 * 22 21 20 24 24 C 1.38202 * 120.76686 * 0.51938 * 23 22 21 25 25 C 1.46847 * 110.99967 * 65.20569 * 13 2 1 26 26 H 1.09005 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47166 * 299.99494 * 1 2 3 28 28 H 1.09004 * 109.46906 * 59.99686 * 1 2 3 29 29 H 1.09007 * 109.46404 * 302.33005 * 4 2 1 30 30 H 1.09000 * 109.46627 * 62.32401 * 4 2 1 31 31 H 0.97004 * 119.99714 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.45647 * 65.82586 * 14 13 2 33 33 H 1.09000 * 109.46099 * 305.85811 * 14 13 2 34 34 H 1.09000 * 109.50517 * 180.88164 * 15 14 13 35 35 H 1.09004 * 109.53550 * 60.78205 * 15 14 13 36 36 H 1.08990 * 109.52801 * 297.75314 * 16 15 14 37 37 H 1.09002 * 109.57392 * 177.58667 * 16 15 14 38 38 H 1.07998 * 120.41991 * 359.97438 * 20 19 17 39 39 H 1.07997 * 119.62000 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.61660 * 180.26454 * 23 22 21 41 41 H 1.07998 * 120.42477 * 179.76481 * 24 23 22 42 42 H 1.08993 * 109.46663 * 54.13818 * 25 13 2 43 43 H 1.09003 * 109.46011 * 294.16914 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5459 -0.6716 1.2784 6 1 4.0820 -0.1043 0.5320 7 6 4.2392 -1.3504 2.2580 8 7 3.5863 -2.0409 3.1671 9 14 6.1058 -1.2892 2.2937 10 1 6.5953 -0.4511 1.1698 11 1 6.5574 -0.7036 3.5815 12 1 6.6488 -2.6647 2.1581 13 7 2.0196 -0.6924 -1.1995 14 6 1.5296 -2.0760 -1.2454 15 6 2.1737 -2.8078 -2.4251 16 6 1.8224 -2.0788 -3.7250 17 6 2.3007 -0.6271 -3.6320 18 1 3.3851 -0.6074 -3.5238 19 6 1.9066 0.1136 -4.8838 20 6 2.8680 0.6911 -5.6992 21 6 2.4689 1.3621 -6.8396 22 7 1.1916 1.4603 -7.1523 23 6 0.2507 0.9193 -6.4033 24 6 0.5741 0.2332 -5.2480 25 6 1.6530 0.0416 -2.4174 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6429 -0.2322 2.1387 30 1 1.7111 -1.7603 1.2284 31 1 4.0741 -2.5182 3.8564 32 1 0.4464 -2.0736 -1.3671 33 1 1.7896 -2.5843 -0.3169 34 1 1.7979 -3.8300 -2.4682 35 1 3.2561 -2.8230 -2.2974 36 1 0.7428 -2.0977 -3.8730 37 1 2.3139 -2.5712 -4.5641 38 1 3.9154 0.6175 -5.4463 39 1 3.2114 1.8151 -7.4798 40 1 -0.7849 1.0170 -6.6938 41 1 -0.2012 -0.2045 -4.6367 42 1 2.0025 1.0710 -2.3401 43 1 0.5692 0.0339 -2.5336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298497189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:19 Heat of formation + Delta-G solvation = 22.631591 kcal Electronic energy + Delta-G solvation = -21547.727863 eV Core-core repulsion = 18591.954136 eV Total energy + Delta-G solvation = -2955.773727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47163 -38.83890 -35.46206 -32.99174 -32.30508 -31.29209 -30.05311 -29.11920 -27.31861 -24.36314 -23.99602 -23.50735 -22.59864 -21.79494 -19.74795 -18.59341 -16.78612 -16.28807 -16.14995 -15.70836 -15.32444 -14.59716 -14.35553 -14.10503 -14.02120 -13.85511 -13.54466 -13.35864 -12.97142 -12.63146 -12.13720 -11.95505 -11.81067 -11.75725 -11.47057 -11.07850 -11.02379 -10.65082 -10.54778 -10.41501 -10.33649 -10.10235 -9.96149 -9.53359 -9.42153 -9.23779 -9.12480 -8.96613 -8.27235 -7.47216 -5.90196 -3.87713 1.05274 1.19001 3.36850 3.44656 3.49946 3.73129 4.31344 4.36561 4.55369 4.66416 4.79858 5.02168 5.06163 5.07120 5.14114 5.30036 5.47249 5.49826 5.56994 5.64615 5.69146 5.76767 5.81747 5.84341 5.91397 5.97025 6.02608 6.06617 6.07784 6.19269 6.27264 6.44185 6.44902 6.60964 6.62747 6.68400 6.77940 6.96289 7.52924 7.68094 7.87541 7.91884 8.00561 8.11478 8.56429 9.18390 9.74083 11.21815 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.004483 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.065847 B = 6243.957343 C = 6653.493707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 H 0.068 0.932 4 C 0.028 3.972 5 C -0.487 4.487 6 H 0.061 0.939 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.508 5.508 14 C 0.054 3.946 15 C -0.116 4.116 16 C -0.107 4.107 17 C -0.050 4.050 18 H 0.091 0.909 19 C -0.022 4.022 20 C -0.169 4.169 21 C 0.096 3.904 22 N -0.495 5.495 23 C 0.095 3.905 24 C -0.168 4.168 25 C 0.065 3.935 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.015 0.985 30 H 0.024 0.976 31 H 0.256 0.744 32 H 0.021 0.979 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.135 0.865 39 H 0.153 0.847 40 H 0.152 0.848 41 H 0.132 0.868 42 H 0.067 0.933 43 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.682 2.343 -16.487 17.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.086 0.914 4 C -0.009 4.009 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.231 5.231 14 C -0.073 4.073 15 C -0.154 4.154 16 C -0.144 4.144 17 C -0.069 4.069 18 H 0.110 0.890 19 C -0.030 4.030 20 C -0.189 4.189 21 C -0.061 4.061 22 N -0.204 5.204 23 C -0.061 4.061 24 C -0.188 4.188 25 C -0.064 4.064 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.039 0.961 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.153 0.847 39 H 0.170 0.830 40 H 0.169 0.831 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -5.371 2.679 -17.060 18.085 hybrid contribution 0.377 -0.444 0.859 1.038 sum -4.994 2.235 -16.201 17.100 Atomic orbital electron populations 1.22525 0.99866 1.01297 1.00644 1.21895 0.89976 0.98324 0.91832 0.91375 1.19245 0.96476 0.95510 0.89711 1.21183 0.91384 1.29134 1.10896 0.92118 1.24989 0.97971 0.95914 0.95956 1.69971 1.35011 1.33331 1.16201 0.86594 0.86565 0.77554 0.77611 1.19798 1.21435 1.21344 1.61983 1.59266 1.01335 1.00540 1.22115 0.95439 0.90125 0.99650 1.21586 1.02295 0.97876 0.93608 1.21608 1.00445 0.94075 0.98307 1.20301 1.02070 0.94223 0.90297 0.89029 1.20428 0.93152 0.94012 0.95431 1.22137 1.00814 0.99766 0.96192 1.22724 0.92840 0.95643 0.94862 1.67650 1.01597 1.19046 1.32112 1.22705 0.98868 0.93426 0.91114 1.22032 0.96868 1.01334 0.98561 1.22038 0.96749 0.97610 0.89954 0.92892 0.92570 0.94183 0.96693 0.95796 0.93391 0.96057 0.88853 0.91990 0.90766 0.92431 0.92268 0.84726 0.82975 0.83065 0.85046 0.91404 0.95420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 8.50 37.16 0.32 -2.79 16 2 C 0.09 1.74 2.33 -67.71 -0.16 1.58 16 3 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 4 C 0.03 0.68 4.22 -27.88 -0.12 0.56 16 5 C -0.49 -13.35 8.77 -34.44 -0.30 -13.66 16 6 H 0.06 1.67 7.75 -52.49 -0.41 1.27 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 N -0.51 -9.25 4.28 -226.69 -0.97 -10.22 16 14 C 0.05 0.94 4.63 -3.84 -0.02 0.92 16 15 C -0.12 -1.67 6.09 -26.65 -0.16 -1.84 16 16 C -0.11 -1.32 5.14 -26.60 -0.14 -1.46 16 17 C -0.05 -0.65 2.55 -91.69 -0.23 -0.89 16 18 H 0.09 1.27 7.95 -51.93 -0.41 0.86 16 19 C -0.02 -0.25 4.80 -104.31 -0.50 -0.76 16 20 C -0.17 -1.85 9.77 -39.44 -0.39 -2.24 16 21 C 0.10 1.04 11.18 -17.55 -0.20 0.84 16 22 N -0.49 -6.03 10.36 -13.25 -0.14 -6.17 16 23 C 0.10 1.04 11.18 -17.55 -0.20 0.84 16 24 C -0.17 -1.85 8.81 -39.44 -0.35 -2.20 16 25 C 0.07 0.97 4.15 -3.83 -0.02 0.96 16 26 H 0.05 0.89 6.52 -51.93 -0.34 0.55 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.60 6.66 -51.93 -0.35 0.25 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.63 6.18 -51.93 -0.32 0.31 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.02 0.34 6.62 -51.93 -0.34 0.00 16 33 H 0.09 1.91 5.99 -51.93 -0.31 1.60 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.68 7.41 -51.93 -0.38 0.29 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.13 1.27 8.01 -52.49 -0.42 0.85 16 39 H 0.15 1.24 8.06 -52.49 -0.42 0.81 16 40 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.13 1.30 7.25 -52.49 -0.38 0.92 16 42 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16 43 H 0.03 0.40 6.03 -51.93 -0.31 0.08 16 LS Contribution 334.00 15.07 5.03 5.03 Total: -1.00 -30.11 334.00 -9.82 -39.93 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -6.91 Total: -0.47 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.55 Total: -18.77 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: -0.37 Total: -42.48 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.11 -9.82 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298497189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.564 kcal (2) G-P(sol) polarization free energy of solvation -30.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds