Wall clock time and date at job start Mon Mar 30 2020 01:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47281 * 2 1 4 4 C 1.53003 * 109.47423 * 120.00545 * 2 1 3 5 5 C 1.50694 * 109.47566 * 182.32988 * 4 2 1 6 6 H 1.08001 * 119.99970 * 5.19701 * 5 4 2 7 7 C 1.37879 * 120.00033 * 185.20753 * 5 4 2 8 8 N 1.31508 * 119.99862 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99709 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47360 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47278 * 119.99658 * 9 7 5 12 12 H 1.48507 * 109.46714 * 239.99280 * 9 7 5 13 13 N 1.46902 * 109.47144 * 240.00316 * 2 1 3 14 14 C 1.46846 * 111.00225 * 300.98807 * 13 2 1 15 15 C 1.53033 * 109.52450 * 185.83896 * 14 13 2 16 16 C 1.53120 * 109.27994 * 300.82042 * 15 14 13 17 17 C 1.53124 * 109.15550 * 57.65697 * 16 15 14 18 18 H 1.08996 * 109.50892 * 62.32919 * 17 16 15 19 19 C 1.50704 * 109.50073 * 182.40407 * 17 16 15 20 20 C 1.38656 * 120.78763 * 240.00223 * 19 17 16 21 21 C 1.38203 * 119.15988 * 179.97438 * 20 19 17 22 22 N 1.31873 * 120.76346 * 0.24892 * 21 20 19 23 23 C 1.31865 * 121.72601 * 359.48111 * 22 21 20 24 24 C 1.38202 * 120.76686 * 0.51938 * 23 22 21 25 25 C 1.46847 * 110.99967 * 65.20569 * 13 2 1 26 26 H 1.09005 * 109.46909 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47166 * 299.99494 * 1 2 3 28 28 H 1.09004 * 109.46906 * 59.99686 * 1 2 3 29 29 H 1.09007 * 109.46404 * 302.33005 * 4 2 1 30 30 H 1.09000 * 109.46627 * 62.32401 * 4 2 1 31 31 H 0.97004 * 119.99714 * 180.02562 * 8 7 5 32 32 H 1.09005 * 109.45647 * 65.82586 * 14 13 2 33 33 H 1.09000 * 109.46099 * 305.85811 * 14 13 2 34 34 H 1.09000 * 109.50517 * 180.88164 * 15 14 13 35 35 H 1.09004 * 109.53550 * 60.78205 * 15 14 13 36 36 H 1.08990 * 109.52801 * 297.75314 * 16 15 14 37 37 H 1.09002 * 109.57392 * 177.58667 * 16 15 14 38 38 H 1.07998 * 120.41991 * 359.97438 * 20 19 17 39 39 H 1.07997 * 119.62000 * 179.97438 * 21 20 19 40 40 H 1.08000 * 119.61660 * 180.26454 * 23 22 21 41 41 H 1.07998 * 120.42477 * 179.76481 * 24 23 22 42 42 H 1.08993 * 109.46663 * 54.13818 * 25 13 2 43 43 H 1.09003 * 109.46011 * 294.16914 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5459 -0.6716 1.2784 6 1 4.0820 -0.1043 0.5320 7 6 4.2392 -1.3504 2.2580 8 7 3.5863 -2.0409 3.1671 9 14 6.1058 -1.2892 2.2937 10 1 6.5953 -0.4511 1.1698 11 1 6.5574 -0.7036 3.5815 12 1 6.6488 -2.6647 2.1581 13 7 2.0196 -0.6924 -1.1995 14 6 1.5296 -2.0760 -1.2454 15 6 2.1737 -2.8078 -2.4251 16 6 1.8224 -2.0788 -3.7250 17 6 2.3007 -0.6271 -3.6320 18 1 3.3851 -0.6074 -3.5238 19 6 1.9066 0.1136 -4.8838 20 6 2.8680 0.6911 -5.6992 21 6 2.4689 1.3621 -6.8396 22 7 1.1916 1.4603 -7.1523 23 6 0.2507 0.9193 -6.4033 24 6 0.5741 0.2332 -5.2480 25 6 1.6530 0.0416 -2.4174 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6429 -0.2322 2.1387 30 1 1.7111 -1.7603 1.2284 31 1 4.0741 -2.5182 3.8564 32 1 0.4464 -2.0736 -1.3671 33 1 1.7896 -2.5843 -0.3169 34 1 1.7979 -3.8300 -2.4682 35 1 3.2561 -2.8230 -2.2974 36 1 0.7428 -2.0977 -3.8730 37 1 2.3139 -2.5712 -4.5641 38 1 3.9154 0.6175 -5.4463 39 1 3.2114 1.8151 -7.4798 40 1 -0.7849 1.0170 -6.6938 41 1 -0.2012 -0.2045 -4.6367 42 1 2.0025 1.0710 -2.3401 43 1 0.5692 0.0339 -2.5336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298497189.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:18 Heat of formation + Delta-G solvation = 5.483789 kcal Electronic energy + Delta-G solvation = -21548.471447 eV Core-core repulsion = 18591.954136 eV Total energy + Delta-G solvation = -2956.517312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.38996 -40.07316 -36.79144 -34.70659 -33.73045 -32.08675 -31.48816 -30.29296 -29.13191 -25.63852 -25.36440 -24.41884 -24.19612 -22.89637 -20.99375 -19.97949 -18.33551 -17.72632 -17.20065 -16.77027 -16.50296 -16.34538 -15.70995 -15.36336 -15.14680 -14.87724 -14.68076 -14.40817 -14.25849 -14.05644 -13.72435 -13.56159 -13.14472 -12.97470 -12.81877 -12.72529 -12.49861 -12.33958 -12.18673 -11.87062 -11.59168 -11.48882 -11.36039 -11.05937 -10.92758 -10.46930 -10.35585 -10.34130 -10.02871 -8.87255 -8.08796 -6.12846 0.26115 0.33476 1.41126 1.42666 1.55202 2.48210 2.89602 3.08081 3.27743 3.63207 3.71203 3.78847 3.93939 4.14496 4.17774 4.22781 4.26741 4.27950 4.42034 4.44832 4.47989 4.55146 4.67487 4.74132 4.78716 4.85807 4.91352 4.95524 5.01130 5.10856 5.14151 5.14583 5.22951 5.23013 5.32118 5.44730 5.53945 5.59583 5.72165 5.83629 5.91431 6.34187 6.49285 6.56282 7.00827 7.07486 7.52855 9.03412 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.023444 B = 0.004483 C = 0.004207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.065847 B = 6243.957343 C = 6653.493707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.095 3.905 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.494 4.494 6 H 0.056 0.944 7 C -0.003 4.003 8 N -0.940 5.940 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.528 5.528 14 C 0.059 3.941 15 C -0.111 4.111 16 C -0.098 4.098 17 C -0.042 4.042 18 H 0.079 0.921 19 C -0.031 4.031 20 C -0.174 4.174 21 C 0.091 3.909 22 N -0.517 5.517 23 C 0.090 3.910 24 C -0.169 4.169 25 C 0.070 3.930 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.065 0.935 29 H -0.012 1.012 30 H 0.003 0.997 31 H 0.258 0.742 32 H 0.035 0.965 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.146 0.854 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.144 0.856 42 H 0.061 0.939 43 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.857 2.745 -18.676 19.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.014 4.014 3 H 0.079 0.921 4 C -0.003 4.003 5 C -0.532 4.532 6 H 0.074 0.926 7 C -0.199 4.199 8 N -0.582 5.582 9 Si 0.779 3.221 10 H -0.190 1.190 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.252 5.252 14 C -0.069 4.069 15 C -0.149 4.149 16 C -0.136 4.136 17 C -0.060 4.060 18 H 0.098 0.902 19 C -0.040 4.040 20 C -0.194 4.194 21 C -0.066 4.066 22 N -0.226 5.226 23 C -0.066 4.066 24 C -0.189 4.189 25 C -0.058 4.058 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.006 0.994 30 H 0.021 0.979 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.164 0.836 39 H 0.192 0.808 40 H 0.192 0.808 41 H 0.162 0.838 42 H 0.080 0.920 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -5.547 3.089 -19.266 20.285 hybrid contribution 0.414 -0.552 1.537 1.685 sum -5.133 2.537 -17.728 18.630 Atomic orbital electron populations 1.22381 0.97291 1.01624 1.01944 1.21593 0.92009 0.97098 0.90674 0.92095 1.19096 0.95294 0.94597 0.91326 1.21465 0.92860 1.28503 1.10416 0.92588 1.25792 1.02630 0.95717 0.95715 1.70093 1.36812 1.34347 1.16980 0.85571 0.81033 0.77665 0.77788 1.19004 1.20982 1.20931 1.61867 1.60183 1.01968 1.01168 1.22012 0.96442 0.89538 0.98893 1.21543 1.00881 0.98820 0.93668 1.21551 1.01434 0.93335 0.97256 1.20150 1.01139 0.94691 0.90065 0.90250 1.20343 0.93897 0.94650 0.95085 1.22311 1.01385 0.99522 0.96180 1.23109 0.93014 0.95375 0.95067 1.67697 1.02324 1.19741 1.32860 1.23109 0.99817 0.92832 0.90847 1.22170 0.96743 1.01226 0.98758 1.22042 0.97697 0.97000 0.89089 0.93006 0.92542 0.91567 0.99382 0.97880 0.93342 0.94668 0.93078 0.90319 0.92637 0.91033 0.90786 0.83621 0.80788 0.80795 0.83797 0.92046 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.67 8.50 71.98 0.61 -5.06 16 2 C 0.09 3.78 2.33 44.91 0.10 3.89 16 3 H 0.06 2.50 8.08 -2.39 -0.02 2.48 16 4 C 0.03 1.75 4.22 29.85 0.13 1.87 16 5 C -0.49 -27.76 8.77 25.60 0.22 -27.53 16 6 H 0.06 3.14 7.75 -2.91 -0.02 3.11 16 7 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 8 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 9 Si 0.95 45.24 29.54 68.60 2.03 47.27 16 10 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 13 N -0.53 -19.11 4.28 -871.12 -3.73 -22.84 16 14 C 0.06 2.02 4.63 86.32 0.40 2.42 16 15 C -0.11 -3.10 6.09 30.65 0.19 -2.91 16 16 C -0.10 -2.19 5.14 30.68 0.16 -2.03 16 17 C -0.04 -1.00 2.55 -11.49 -0.03 -1.03 16 18 H 0.08 2.11 7.95 -2.39 -0.02 2.09 16 19 C -0.03 -0.66 4.80 -19.66 -0.09 -0.75 16 20 C -0.17 -3.44 9.77 22.36 0.22 -3.22 16 21 C 0.09 1.75 11.18 84.68 0.95 2.70 16 22 N -0.52 -11.40 10.36 -195.85 -2.03 -13.43 16 23 C 0.09 1.71 11.18 84.68 0.95 2.66 16 24 C -0.17 -3.23 8.81 22.36 0.20 -3.03 16 25 C 0.07 1.97 4.15 86.33 0.36 2.33 16 26 H 0.05 1.69 6.52 -2.38 -0.02 1.68 16 27 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 1.82 6.66 -2.38 -0.02 1.80 16 29 H -0.01 -0.67 8.14 -2.38 -0.02 -0.69 16 30 H 0.00 0.16 6.18 -2.39 -0.01 0.15 16 31 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.04 1.09 6.62 -2.38 -0.02 1.08 16 33 H 0.05 2.18 5.99 -2.39 -0.01 2.16 16 34 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.07 1.43 7.41 -2.39 -0.02 1.41 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.15 2.45 8.01 -2.91 -0.02 2.43 16 39 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 41 H 0.14 2.33 7.25 -2.91 -0.02 2.31 16 42 H 0.06 1.81 8.07 -2.39 -0.02 1.79 16 43 H 0.04 1.06 6.03 -2.39 -0.01 1.05 16 Total: -1.00 -65.63 334.00 2.34 -63.29 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: 0.97 Total: 12.06 kcal Atomic # 6 Polarization: -34.21 SS G_CDS: 4.82 Total: -29.39 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -5.48 Total: -93.22 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -65.63 2.34 -63.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298497189.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.771 kcal (2) G-P(sol) polarization free energy of solvation -65.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds