Wall clock time and date at job start Mon Mar 30 2020 01:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 14 14 C 1.33361 * 125.19572 * 99.99782 * 13 2 1 15 15 C 1.38450 * 114.93083 * 180.02562 * 14 13 2 16 16 C 1.33474 * 114.89360 * 359.97438 * 15 14 13 17 17 Br 1.89100 * 125.21077 * 180.02562 * 16 15 14 18 18 S 1.75884 * 109.58635 * 359.73800 * 16 15 14 19 19 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 20 20 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 21 21 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 22 22 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 23 23 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 24 24 H 1.08005 * 122.53149 * 0.02562 * 14 13 2 25 25 H 1.07996 * 122.55574 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 1.4868 0.8110 5.5294 11 1 3.3224 -0.6423 6.1623 12 1 3.7614 1.3974 4.9269 13 6 2.0323 -0.7104 -1.2305 14 6 2.4669 -0.1117 -2.3401 15 6 2.8802 -0.9715 -3.3435 16 6 2.7812 -2.2692 -3.0475 17 35 3.2626 -3.6899 -4.1989 18 16 2.1423 -2.4556 -1.4195 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 2.2491 -1.6318 1.1526 23 1 3.2629 -2.3923 4.2382 24 1 2.4945 0.9626 -2.4477 25 1 3.2549 -0.6190 -4.2931 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306433332.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:31 Heat of formation + Delta-G solvation = 40.238818 kcal Electronic energy + Delta-G solvation = -11604.771059 eV Core-core repulsion = 9370.435229 eV Total energy + Delta-G solvation = -2234.335830 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 274.967 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -37.90300 -35.41062 -32.37293 -31.25023 -28.84429 -27.34525 -24.33157 -23.24656 -20.87807 -19.14996 -17.24713 -16.66589 -15.23697 -14.67181 -13.68532 -13.64136 -13.38137 -12.66949 -12.49413 -12.33350 -12.02952 -11.52617 -11.00533 -10.86363 -10.81838 -10.60269 -10.35000 -10.15992 -10.11918 -9.76673 -9.04079 -8.25696 -8.19643 -7.10339 -5.83976 -3.15091 1.08081 1.30754 2.02939 2.26882 2.87659 3.40635 3.44944 3.46087 4.52342 5.11628 5.45781 5.54344 5.60004 5.70132 6.00550 6.11791 6.16726 6.34153 6.48103 6.56056 6.70592 6.92901 7.62076 8.32338 9.43878 9.95564 10.30924 11.38055 Molecular weight = 274.97amu Principal moments of inertia in cm(-1) A = 0.039555 B = 0.004906 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.700772 B = 5706.005276 C = 6122.998760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.232 3.768 3 H 0.069 0.931 4 N -0.722 5.722 5 C -0.247 4.247 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.929 5.929 9 Si 0.910 3.090 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.285 1.285 13 C -0.131 4.131 14 C -0.163 4.163 15 C -0.084 4.084 16 C -0.233 4.233 17 Br -0.011 7.011 18 S 0.184 5.816 19 H 0.063 0.937 20 H 0.042 0.958 21 H 0.049 0.951 22 H 0.385 0.615 23 H 0.258 0.742 24 H 0.144 0.856 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.081 -1.342 -16.435 16.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.120 3.880 3 H 0.087 0.913 4 N -0.364 5.364 5 C -0.378 4.378 6 H 0.092 0.908 7 C -0.205 4.205 8 N -0.576 5.576 9 Si 0.741 3.259 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.211 1.211 13 C -0.252 4.252 14 C -0.194 4.194 15 C -0.119 4.119 16 C -0.429 4.429 17 Br 0.073 6.927 18 S 0.448 5.552 19 H 0.082 0.918 20 H 0.061 0.939 21 H 0.068 0.932 22 H 0.219 0.781 23 H 0.068 0.932 24 H 0.161 0.839 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.214 -3.030 -15.770 16.104 hybrid contribution 0.510 1.644 0.202 1.733 sum -0.705 -1.386 -15.568 15.645 Atomic orbital electron populations 1.22469 0.97614 1.01474 1.00674 1.18915 0.92348 0.94780 0.81926 0.91313 1.42534 1.78342 1.10479 1.05045 1.19183 1.37453 0.94104 0.87064 0.90827 1.24777 1.01516 0.96009 0.98220 1.69659 1.49934 1.08716 1.29300 0.86230 0.77856 0.78625 0.83223 1.21123 1.21603 1.21139 1.25595 1.02743 0.96401 1.00459 1.19931 1.05335 1.01085 0.93019 1.20073 1.00493 0.90617 1.00722 1.26058 1.18431 0.96701 1.01708 1.96604 1.91766 1.43213 1.61138 1.84669 1.60663 1.04680 1.05179 0.91827 0.93862 0.93204 0.78058 0.93216 0.83876 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.48 37.16 0.35 -2.51 15 2 C 0.23 4.58 3.32 -69.08 -0.23 4.35 15 3 H 0.07 1.34 8.06 -51.93 -0.42 0.92 15 4 N -0.72 -17.90 5.11 -54.55 -0.28 -18.18 15 5 C -0.25 -6.72 9.93 -15.06 -0.15 -6.87 15 6 H 0.07 1.91 7.83 -52.49 -0.41 1.50 15 7 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 15 8 N -0.93 -27.72 13.06 55.49 0.72 -27.00 15 9 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 15 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 12 H -0.28 -6.78 7.11 56.52 0.40 -6.37 15 13 C -0.13 -2.32 5.45 -36.01 -0.20 -2.52 15 14 C -0.16 -2.47 10.04 -41.21 -0.41 -2.88 15 15 C -0.08 -1.19 10.11 -41.17 -0.42 -1.61 15 16 C -0.23 -3.52 6.97 29.07 0.20 -3.32 15 17 Br -0.01 -0.14 34.07 -68.01 -2.32 -2.46 15 18 S 0.18 3.18 22.30 -107.50 -2.40 0.79 15 19 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 20 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 21 H 0.05 0.90 8.14 -51.92 -0.42 0.47 15 22 H 0.38 10.11 6.86 -40.82 -0.28 9.83 15 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 24 H 0.14 1.84 8.06 -52.48 -0.42 1.41 15 25 H 0.14 1.61 8.06 -52.49 -0.42 1.19 15 LS Contribution 257.79 15.07 3.88 3.88 Total: -1.00 -28.97 257.79 -8.71 -37.68 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.36 Total: 4.00 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: -0.95 Total: -15.69 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.45 Total: -45.18 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.40 Total: 0.79 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -2.32 Total: -2.46 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.97 -8.71 -37.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306433332.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.917 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds