Wall clock time and date at job start Mon Mar 30 2020 01:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.46812 * 2 1 4 4 N 1.46498 * 109.47036 * 120.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 274.72222 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47213 * 60.00246 * 9 7 5 11 11 H 1.48502 * 109.47317 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47081 * 299.99875 * 9 7 5 13 13 C 1.50701 * 109.47247 * 240.00079 * 2 1 3 14 14 C 1.33361 * 125.19572 * 99.99782 * 13 2 1 15 15 C 1.38450 * 114.93083 * 180.02562 * 14 13 2 16 16 C 1.33474 * 114.89360 * 359.97438 * 15 14 13 17 17 Br 1.89100 * 125.21077 * 180.02562 * 16 15 14 18 18 S 1.75884 * 109.58635 * 359.73800 * 16 15 14 19 19 H 1.08997 * 109.47293 * 300.00104 * 1 2 3 20 20 H 1.09003 * 109.47189 * 60.00254 * 1 2 3 21 21 H 1.09009 * 109.47238 * 180.02562 * 1 2 3 22 22 H 0.97001 * 120.00384 * 95.00578 * 4 2 1 23 23 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 24 24 H 1.08005 * 122.53149 * 0.02562 * 14 13 2 25 25 H 1.07996 * 122.55574 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1544 -0.0060 2.3744 6 1 1.8976 1.0419 2.4228 7 6 2.6226 -0.6590 3.5063 8 7 2.9361 -1.9360 3.4471 9 14 2.8076 0.2746 5.1136 10 1 1.4868 0.8110 5.5294 11 1 3.3224 -0.6423 6.1623 12 1 3.7614 1.3974 4.9269 13 6 2.0323 -0.7104 -1.2305 14 6 2.4669 -0.1117 -2.3401 15 6 2.8802 -0.9715 -3.3435 16 6 2.7812 -2.2692 -3.0475 17 35 3.2626 -3.6899 -4.1989 18 16 2.1423 -2.4556 -1.4195 19 1 -0.3634 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 2.2491 -1.6318 1.1526 23 1 3.2629 -2.3923 4.2382 24 1 2.4945 0.9626 -2.4477 25 1 3.2549 -0.6190 -4.2931 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306433332.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:30 Heat of formation + Delta-G solvation = 23.362314 kcal Electronic energy + Delta-G solvation = -11605.502879 eV Core-core repulsion = 9370.435229 eV Total energy + Delta-G solvation = -2235.067651 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 274.967 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.18859 -37.04988 -34.17401 -32.55724 -30.59408 -28.65279 -26.12454 -24.68470 -22.39905 -20.51868 -19.01867 -18.14067 -16.58250 -16.48270 -15.37700 -15.23493 -14.85615 -14.05009 -13.89140 -13.75360 -13.28686 -13.19010 -12.76128 -12.56491 -12.38723 -12.17006 -11.84170 -11.71582 -11.58342 -11.25294 -11.00944 -9.52502 -9.47904 -9.08830 -7.95111 -5.26224 -0.15620 0.10439 0.82128 1.00813 1.48543 1.51468 1.57395 1.69628 2.56056 3.39219 3.75654 3.97518 4.38100 4.49382 4.51861 4.64958 4.93971 4.96648 5.12280 5.19250 5.41633 5.46691 5.52938 6.25129 7.31674 8.01628 8.26188 9.28025 Molecular weight = 274.97amu Principal moments of inertia in cm(-1) A = 0.039555 B = 0.004906 C = 0.004572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.700772 B = 5706.005276 C = 6122.998760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.228 3.772 3 H 0.074 0.926 4 N -0.738 5.738 5 C -0.245 4.245 6 H 0.083 0.917 7 C -0.073 4.073 8 N -0.969 5.969 9 Si 0.975 3.025 10 H -0.276 1.276 11 H -0.298 1.298 12 H -0.277 1.277 13 C -0.157 4.157 14 C -0.143 4.143 15 C -0.079 4.079 16 C -0.229 4.229 17 Br 0.011 6.989 18 S 0.130 5.870 19 H 0.051 0.949 20 H 0.076 0.924 21 H 0.038 0.962 22 H 0.373 0.627 23 H 0.252 0.748 24 H 0.172 0.828 25 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.040 0.137 -18.058 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.118 3.882 3 H 0.092 0.908 4 N -0.379 5.379 5 C -0.377 4.377 6 H 0.101 0.899 7 C -0.266 4.266 8 N -0.619 5.619 9 Si 0.804 3.196 10 H -0.202 1.202 11 H -0.224 1.224 12 H -0.203 1.203 13 C -0.277 4.277 14 C -0.174 4.174 15 C -0.113 4.113 16 C -0.426 4.426 17 Br 0.095 6.905 18 S 0.393 5.607 19 H 0.070 0.930 20 H 0.094 0.906 21 H 0.057 0.943 22 H 0.206 0.794 23 H 0.060 0.940 24 H 0.189 0.811 25 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -1.199 -1.512 -17.434 17.541 hybrid contribution 0.489 1.189 0.508 1.383 sum -0.709 -0.323 -16.926 16.944 Atomic orbital electron populations 1.22311 0.96049 1.01108 1.01677 1.19056 0.93281 0.94692 0.81146 0.90788 1.42750 1.78731 1.10246 1.06204 1.19622 1.35494 0.94551 0.88012 0.89870 1.25591 1.02496 0.96870 1.01596 1.69827 1.52061 1.10369 1.29691 0.85193 0.78046 0.77276 0.79111 1.20213 1.22444 1.20271 1.25303 1.05515 0.96094 1.00802 1.20307 1.02575 1.02604 0.91914 1.20431 0.99373 0.89872 1.01645 1.26227 1.17806 0.97983 1.00571 1.96629 1.91491 1.42572 1.59833 1.84850 1.62254 1.05769 1.07795 0.92993 0.90555 0.94265 0.79408 0.93963 0.81104 0.80855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.19 9.48 71.98 0.68 -4.51 15 2 C 0.23 8.81 3.32 44.24 0.15 8.95 15 3 H 0.07 2.75 8.06 -2.39 -0.02 2.74 15 4 N -0.74 -36.95 5.11 -326.50 -1.67 -38.62 15 5 C -0.25 -13.36 9.93 84.03 0.83 -12.53 15 6 H 0.08 4.25 7.83 -2.91 -0.02 4.23 15 7 C -0.07 -4.16 5.50 84.86 0.47 -3.69 15 8 N -0.97 -59.35 13.06 21.65 0.28 -59.07 15 9 Si 0.98 45.59 29.55 68.60 2.03 47.61 15 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 11 H -0.30 -14.17 7.11 99.48 0.71 -13.47 15 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 13 C -0.16 -5.35 5.45 24.58 0.13 -5.22 15 14 C -0.14 -3.89 10.04 21.22 0.21 -3.68 15 15 C -0.08 -1.97 10.11 21.24 0.21 -1.76 15 16 C -0.23 -6.50 6.97 66.74 0.46 -6.04 15 17 Br 0.01 0.27 34.07 -20.37 -0.69 -0.42 15 18 S 0.13 4.48 22.30 -56.49 -1.26 3.22 15 19 H 0.05 1.87 8.14 -2.39 -0.02 1.85 15 20 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 21 H 0.04 1.40 8.14 -2.38 -0.02 1.38 15 22 H 0.37 20.18 6.86 -92.71 -0.64 19.55 15 23 H 0.25 14.99 8.31 -92.71 -0.77 14.22 15 24 H 0.17 3.64 8.06 -2.91 -0.02 3.62 15 25 H 0.17 3.18 8.06 -2.91 -0.02 3.15 15 Total: -1.00 -62.20 257.79 2.41 -59.79 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.57 Total: 15.96 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.16 Total: -28.47 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -1.38 Total: -97.69 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.26 Total: 3.22 kcal Atomic # 35 Polarization: 0.27 SS G_CDS: -0.69 Total: -0.42 kcal Total: -62.20 2.41 -59.79 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306433332.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.150 kcal (2) G-P(sol) polarization free energy of solvation -62.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds