Wall clock time and date at job start Mon Mar 30 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.47143 * 2 1 4 4 N 1.46494 * 109.47414 * 239.99435 * 2 1 3 5 5 C 1.36933 * 120.00333 * 85.00414 * 4 2 1 6 6 H 1.08008 * 119.99642 * 359.97438 * 5 4 2 7 7 C 1.38811 * 120.00334 * 180.02562 * 5 4 2 8 8 N 1.31617 * 119.99970 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99939 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47330 * 60.00234 * 9 7 5 11 11 H 1.48508 * 109.46924 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47236 * 299.99845 * 9 7 5 13 13 C 1.50706 * 109.46783 * 119.99138 * 2 1 3 14 14 C 1.33355 * 125.19626 * 259.71885 * 13 2 1 15 15 C 1.38457 * 114.93064 * 179.85816 * 14 13 2 16 16 C 1.33471 * 114.88970 * 0.43476 * 15 14 13 17 17 Br 1.89101 * 125.20700 * 179.77064 * 16 15 14 18 18 S 1.75881 * 125.18985 * 80.02541 * 13 2 1 19 19 H 1.09002 * 109.46773 * 60.00710 * 1 2 3 20 20 H 1.08994 * 109.47209 * 180.02562 * 1 2 3 21 21 H 1.08994 * 109.47350 * 300.00727 * 1 2 3 22 22 H 0.97004 * 119.99924 * 265.00385 * 4 2 1 23 23 H 0.97005 * 120.00009 * 180.02562 * 8 7 5 24 24 H 1.08004 * 122.53273 * 0.04137 * 14 13 2 25 25 H 1.07990 * 122.55367 * 180.19867 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1960 5 6 2.1493 -0.0077 -2.3756 6 1 1.8921 1.0401 -2.4243 7 6 2.6116 -0.6623 -3.5091 8 7 2.9236 -1.9396 -3.4501 9 14 2.7895 0.2693 -5.1184 10 1 3.7448 1.3917 -4.9377 11 1 3.2975 -0.6496 -6.1687 12 1 1.4670 0.8060 -5.5285 13 6 2.0323 -0.7103 1.2306 14 6 2.4718 -0.1114 2.3381 15 6 2.8815 -0.9712 3.3432 16 6 2.7827 -2.2689 3.0472 17 35 3.2647 -3.6895 4.1985 18 16 2.1354 -2.4555 1.4225 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 2.2491 -1.6319 -1.1524 23 1 3.2470 -2.3970 -4.2421 24 1 2.5030 0.9629 2.4442 25 1 3.2562 -0.6185 4.2926 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307103486.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:34 Heat of formation + Delta-G solvation = 40.251564 kcal Electronic energy + Delta-G solvation = -11604.597109 eV Core-core repulsion = 9370.261832 eV Total energy + Delta-G solvation = -2234.335278 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 274.967 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -37.90385 -35.41122 -32.37323 -31.25074 -28.84439 -27.34632 -24.33191 -23.24627 -20.87801 -19.15104 -17.24688 -16.66557 -15.23819 -14.67213 -13.68118 -13.64255 -13.38335 -12.67088 -12.49640 -12.33483 -12.02706 -11.52458 -11.00702 -10.86352 -10.81782 -10.60379 -10.35027 -10.16026 -10.11944 -9.76646 -9.04021 -8.25840 -8.19686 -7.10293 -5.83897 -3.14994 1.08025 1.30680 2.02863 2.26825 2.87580 3.40666 3.44976 3.46108 4.52386 5.11591 5.45716 5.54301 5.60101 5.70273 6.00533 6.11687 6.16659 6.34086 6.48088 6.56081 6.70570 6.92909 7.62090 8.32362 9.43948 9.95663 10.31046 11.38129 Molecular weight = 274.97amu Principal moments of inertia in cm(-1) A = 0.039606 B = 0.004903 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.802390 B = 5709.151306 C = 6125.353297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.232 3.768 3 H 0.069 0.931 4 N -0.721 5.721 5 C -0.247 4.247 6 H 0.074 0.926 7 C -0.008 4.008 8 N -0.929 5.929 9 Si 0.910 3.090 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.285 1.285 13 C -0.131 4.131 14 C -0.163 4.163 15 C -0.084 4.084 16 C -0.232 4.232 17 Br -0.011 7.011 18 S 0.184 5.816 19 H 0.063 0.937 20 H 0.049 0.951 21 H 0.042 0.958 22 H 0.385 0.615 23 H 0.258 0.742 24 H 0.144 0.856 25 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -1.334 16.449 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.120 3.880 3 H 0.087 0.913 4 N -0.364 5.364 5 C -0.378 4.378 6 H 0.092 0.908 7 C -0.205 4.205 8 N -0.576 5.576 9 Si 0.741 3.259 10 H -0.211 1.211 11 H -0.216 1.216 12 H -0.211 1.211 13 C -0.252 4.252 14 C -0.194 4.194 15 C -0.119 4.119 16 C -0.429 4.429 17 Br 0.073 6.927 18 S 0.448 5.552 19 H 0.082 0.918 20 H 0.068 0.932 21 H 0.061 0.939 22 H 0.219 0.781 23 H 0.068 0.932 24 H 0.161 0.839 25 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.196 -3.022 15.788 16.119 hybrid contribution 0.506 1.641 -0.208 1.730 sum -0.690 -1.380 15.581 15.657 Atomic orbital electron populations 1.22470 0.97632 1.01469 1.00678 1.18915 0.92328 0.94782 0.81939 0.91313 1.42530 1.78347 1.10550 1.04968 1.19180 1.37597 0.94102 0.86922 0.90831 1.24774 1.01557 0.95991 0.98191 1.69656 1.50049 1.08654 1.29248 0.86233 0.77853 0.78617 0.83244 1.21133 1.21602 1.21131 1.25589 1.02732 0.96394 1.00476 1.19932 1.05329 1.01087 0.93008 1.20073 1.00524 0.90618 1.00695 1.26055 1.18376 0.96702 1.01749 1.96604 1.91746 1.43225 1.61143 1.84666 1.60380 1.04680 1.05479 0.91820 0.93210 0.93869 0.78055 0.93216 0.83874 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.47 37.16 0.35 -2.51 15 2 C 0.23 4.58 3.32 -69.08 -0.23 4.35 15 3 H 0.07 1.33 8.06 -51.93 -0.42 0.92 15 4 N -0.72 -17.90 5.11 -54.55 -0.28 -18.18 15 5 C -0.25 -6.72 9.93 -15.06 -0.15 -6.87 15 6 H 0.07 1.91 7.83 -52.48 -0.41 1.50 15 7 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 15 8 N -0.93 -27.72 13.06 55.49 0.72 -27.00 15 9 Si 0.91 22.00 29.55 -169.99 -5.02 16.97 15 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 15 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 15 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 13 C -0.13 -2.32 5.44 -36.01 -0.20 -2.51 15 14 C -0.16 -2.47 10.04 -41.21 -0.41 -2.88 15 15 C -0.08 -1.19 10.11 -41.17 -0.42 -1.61 15 16 C -0.23 -3.52 6.97 29.06 0.20 -3.32 15 17 Br -0.01 -0.14 34.07 -68.01 -2.32 -2.45 15 18 S 0.18 3.18 22.31 -107.50 -2.40 0.78 15 19 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 20 H 0.05 0.90 8.14 -51.93 -0.42 0.47 15 21 H 0.04 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.38 10.11 6.87 -40.82 -0.28 9.83 15 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 15 24 H 0.14 1.84 8.06 -52.48 -0.42 1.41 15 25 H 0.14 1.61 8.06 -52.49 -0.42 1.19 15 LS Contribution 257.80 15.07 3.89 3.89 Total: -1.00 -28.97 257.80 -8.71 -37.68 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -2.36 Total: 4.00 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -0.95 Total: -15.68 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.45 Total: -45.18 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.40 Total: 0.78 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -2.32 Total: -2.45 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.97 -8.71 -37.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307103486.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.932 kcal (2) G-P(sol) polarization free energy of solvation -28.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds