Wall clock time and date at job start Mon Mar 30 2020 01:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99860 * 2 1 4 4 H 1.48494 * 109.46995 * 269.99770 * 3 2 1 5 5 H 1.48499 * 109.47210 * 29.99697 * 3 2 1 6 6 H 1.48499 * 109.46961 * 149.99899 * 3 2 1 7 7 C 1.38810 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99893 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00392 * 0.02562 * 7 2 1 10 10 S 1.65600 * 120.00095 * 179.97438 * 9 7 2 11 11 O 1.42102 * 104.27767 * 308.92464 * 10 9 7 12 12 O 1.42095 * 104.27470 * 181.06975 * 10 9 7 13 13 C 1.81397 * 104.45007 * 64.99912 * 10 9 7 14 14 C 1.50702 * 109.47152 * 180.02562 * 13 10 9 15 15 C 1.38270 * 119.99101 * 270.27576 * 14 13 10 16 16 C 1.38215 * 120.02537 * 180.27948 * 15 14 13 17 17 C 1.38238 * 120.01126 * 359.44038 * 16 15 14 18 18 C 1.38325 * 119.98878 * 0.28199 * 17 16 15 19 19 Cl 1.73606 * 120.01335 * 179.97438 * 18 17 16 20 20 C 1.38193 * 119.99765 * 89.99978 * 14 13 10 21 21 H 0.97000 * 120.00360 * 0.02562 * 1 2 3 22 22 H 0.96999 * 119.99773 * 359.97438 * 9 7 2 23 23 H 1.08998 * 109.47482 * 59.99768 * 13 10 9 24 24 H 1.09000 * 109.47133 * 299.99637 * 13 10 9 25 25 H 1.07997 * 119.98420 * 0.02562 * 15 14 13 26 26 H 1.08002 * 119.99636 * 179.72646 * 16 15 14 27 27 H 1.07999 * 120.00577 * 180.25936 * 17 16 15 28 28 H 1.08003 * 120.00423 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 16 2.1536 -3.8222 0.0005 11 8 3.0782 -3.6930 -1.0708 12 8 1.1364 -4.8141 -0.0252 13 6 3.0229 -3.8430 1.5925 14 6 3.8223 -5.1149 1.7118 15 6 3.2474 -6.2431 2.2673 16 6 3.9818 -7.4083 2.3823 17 6 5.2879 -7.4498 1.9314 18 6 5.8617 -6.3232 1.3704 19 17 7.5022 -6.3744 0.8045 20 6 5.1279 -5.1552 1.2608 21 1 -0.4851 0.8400 -0.0004 22 1 0.3556 -2.3881 0.0005 23 1 2.2967 -3.7924 2.4038 24 1 3.6937 -2.9859 1.6515 25 1 2.2254 -6.2125 2.6152 26 1 3.5336 -8.2880 2.8204 27 1 5.8603 -8.3616 2.0175 28 1 5.5756 -4.2751 0.8232 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335123270.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:34 Heat of formation + Delta-G solvation = -62.089653 kcal Electronic energy + Delta-G solvation = -16637.468088 eV Core-core repulsion = 13613.122648 eV Total energy + Delta-G solvation = -3024.345440 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.30001 -36.47615 -35.91229 -34.84153 -34.69990 -32.70601 -31.13121 -30.69525 -27.01907 -24.67664 -22.64860 -21.60645 -18.38581 -18.21135 -16.94266 -16.65336 -15.64542 -15.53936 -15.10574 -14.75022 -14.45478 -13.81066 -13.61888 -13.42207 -13.09407 -12.22579 -12.06555 -11.68221 -11.48142 -11.39995 -11.32101 -11.15172 -10.98442 -10.86529 -10.84738 -10.66808 -10.41983 -10.14536 -10.08156 -8.82177 -8.60966 -8.31104 -6.66954 -4.01328 0.98126 1.22783 1.57442 2.12797 3.10134 3.15095 3.16073 3.66282 3.86744 4.21312 4.64951 4.79044 4.81756 5.02405 5.07830 5.19829 5.32944 5.44645 5.64332 5.81290 5.95855 6.17967 6.23802 6.33715 6.55506 6.82086 6.86933 7.29897 8.50302 8.60784 9.06528 10.47440 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.025392 B = 0.005236 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.428477 B = 5346.467647 C = 5979.131715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.029 3.971 3 Si 0.928 3.072 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.266 1.266 7 C -0.262 4.262 8 H 0.108 0.892 9 N -0.940 5.940 10 S 2.522 3.478 11 O -0.966 6.966 12 O -1.000 7.000 13 C -0.619 4.619 14 C -0.050 4.050 15 C -0.113 4.113 16 C -0.105 4.105 17 C -0.122 4.122 18 C -0.030 4.030 19 Cl -0.075 7.075 20 C -0.108 4.108 21 H 0.279 0.721 22 H 0.410 0.590 23 H 0.127 0.873 24 H 0.131 0.869 25 H 0.135 0.865 26 H 0.134 0.866 27 H 0.132 0.868 28 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.853 -8.158 6.098 12.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.181 4.181 3 Si 0.753 3.247 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.406 4.406 8 H 0.125 0.875 9 N -0.689 5.689 10 S 2.614 3.386 11 O -0.956 6.956 12 O -0.989 6.989 13 C -0.737 4.737 14 C -0.051 4.051 15 C -0.132 4.132 16 C -0.123 4.123 17 C -0.141 4.141 18 C -0.057 4.057 19 Cl -0.046 7.046 20 C -0.128 4.128 21 H 0.089 0.911 22 H 0.245 0.755 23 H 0.145 0.855 24 H 0.149 0.851 25 H 0.153 0.847 26 H 0.151 0.849 27 H 0.150 0.850 28 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.102 -8.891 5.433 13.199 hybrid contribution 0.241 1.185 0.728 1.412 sum 8.343 -7.706 6.161 12.921 Atomic orbital electron populations 1.69700 1.06201 1.28898 1.45525 1.25390 0.95741 0.99968 0.96966 0.85900 0.79267 0.80535 0.78975 1.19822 1.20512 1.19037 1.19518 0.92515 0.83274 1.45249 0.87484 1.52076 1.17310 1.19908 1.79641 1.10786 0.74390 0.73987 0.79436 1.93467 1.65652 1.86157 1.50286 1.93392 1.56485 1.60839 1.88182 1.30226 1.12626 1.00198 1.30636 1.19232 0.93360 0.94419 0.98136 1.21304 1.00625 0.92454 0.98831 1.21080 0.93477 0.98191 0.99553 1.21012 0.95849 0.97313 0.99894 1.20854 0.86593 0.95911 1.02317 1.98356 1.19523 1.98718 1.88035 1.21089 0.93667 0.97711 1.00308 0.91134 0.75461 0.85452 0.85109 0.84746 0.84858 0.85018 0.84250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -21.83 13.06 55.49 0.72 -21.11 15 2 C 0.03 0.70 5.50 -17.43 -0.10 0.60 15 3 Si 0.93 18.58 29.55 -169.99 -5.02 13.56 15 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 15 5 H -0.28 -5.55 7.11 56.52 0.40 -5.15 15 6 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 7 C -0.26 -6.32 9.49 -15.06 -0.14 -6.47 15 8 H 0.11 2.41 7.82 -52.48 -0.41 2.00 15 9 N -0.94 -22.03 5.65 31.50 0.18 -21.85 15 10 S 2.52 54.77 5.41 -107.50 -0.58 54.19 15 11 O -0.97 -23.71 17.76 -57.54 -1.02 -24.74 15 12 O -1.00 -23.62 18.08 -57.54 -1.04 -24.66 15 13 C -0.62 -10.77 6.13 36.01 0.22 -10.55 15 14 C -0.05 -0.83 5.14 -104.63 -0.54 -1.36 15 15 C -0.11 -1.68 9.70 -39.58 -0.38 -2.06 15 16 C -0.10 -1.31 10.05 -39.59 -0.40 -1.71 15 17 C -0.12 -1.54 9.83 -39.55 -0.39 -1.92 15 18 C -0.03 -0.44 6.32 -39.50 -0.25 -0.69 15 19 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.48 15 20 C -0.11 -1.75 9.49 -39.55 -0.38 -2.13 15 21 H 0.28 6.59 8.31 -40.82 -0.34 6.25 15 22 H 0.41 9.84 7.98 -34.47 -0.28 9.57 15 23 H 0.13 1.98 8.09 -51.93 -0.42 1.56 15 24 H 0.13 2.13 8.08 -51.92 -0.42 1.71 15 25 H 0.13 1.80 8.06 -52.49 -0.42 1.38 15 26 H 0.13 1.23 8.06 -52.49 -0.42 0.81 15 27 H 0.13 1.31 8.06 -52.49 -0.42 0.89 15 28 H 0.14 2.17 8.06 -52.48 -0.42 1.75 15 LS Contribution 283.95 15.07 4.28 4.28 Total: -1.00 -29.47 283.95 -8.69 -38.16 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -2.35 Total: 10.93 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: -2.35 Total: -26.28 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: 0.90 Total: -42.96 kcal Atomic # 8 Polarization: -47.33 SS G_CDS: -2.06 Total: -49.40 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.02 Total: 13.56 kcal Atomic # 16 Polarization: 54.77 SS G_CDS: -0.58 Total: 54.19 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.47 -8.69 -38.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335123270.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.928 kcal (2) G-P(sol) polarization free energy of solvation -29.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds