Wall clock time and date at job start Mon Mar 30 2020 01:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86799 * 119.99860 * 2 1 4 4 H 1.48494 * 109.46995 * 269.99770 * 3 2 1 5 5 H 1.48499 * 109.47210 * 29.99697 * 3 2 1 6 6 H 1.48499 * 109.46961 * 149.99899 * 3 2 1 7 7 C 1.38810 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99893 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00392 * 0.02562 * 7 2 1 10 10 S 1.65600 * 120.00095 * 179.97438 * 9 7 2 11 11 O 1.42102 * 104.27767 * 308.92464 * 10 9 7 12 12 O 1.42095 * 104.27470 * 181.06975 * 10 9 7 13 13 C 1.81397 * 104.45007 * 64.99912 * 10 9 7 14 14 C 1.50702 * 109.47152 * 180.02562 * 13 10 9 15 15 C 1.38270 * 119.99101 * 270.27576 * 14 13 10 16 16 C 1.38215 * 120.02537 * 180.27948 * 15 14 13 17 17 C 1.38238 * 120.01126 * 359.44038 * 16 15 14 18 18 C 1.38325 * 119.98878 * 0.28199 * 17 16 15 19 19 Cl 1.73606 * 120.01335 * 179.97438 * 18 17 16 20 20 C 1.38193 * 119.99765 * 89.99978 * 14 13 10 21 21 H 0.97000 * 120.00360 * 0.02562 * 1 2 3 22 22 H 0.96999 * 119.99773 * 359.97438 * 9 7 2 23 23 H 1.08998 * 109.47482 * 59.99768 * 13 10 9 24 24 H 1.09000 * 109.47133 * 299.99637 * 13 10 9 25 25 H 1.07997 * 119.98420 * 0.02562 * 15 14 13 26 26 H 1.08002 * 119.99636 * 179.72646 * 16 15 14 27 27 H 1.07999 * 120.00577 * 180.25936 * 17 16 15 28 28 H 1.08003 * 120.00423 * 0.02562 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 16 2.1536 -3.8222 0.0005 11 8 3.0782 -3.6930 -1.0708 12 8 1.1364 -4.8141 -0.0252 13 6 3.0229 -3.8430 1.5925 14 6 3.8223 -5.1149 1.7118 15 6 3.2474 -6.2431 2.2673 16 6 3.9818 -7.4083 2.3823 17 6 5.2879 -7.4498 1.9314 18 6 5.8617 -6.3232 1.3704 19 17 7.5022 -6.3744 0.8045 20 6 5.1279 -5.1552 1.2608 21 1 -0.4851 0.8400 -0.0004 22 1 0.3556 -2.3881 0.0005 23 1 2.2967 -3.7924 2.4038 24 1 3.6937 -2.9859 1.6515 25 1 2.2254 -6.2125 2.6152 26 1 3.5336 -8.2880 2.8204 27 1 5.8603 -8.3616 2.0175 28 1 5.5756 -4.2751 0.8232 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335123270.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:33 Heat of formation + Delta-G solvation = -82.343086 kcal Electronic energy + Delta-G solvation = -16638.346343 eV Core-core repulsion = 13613.122648 eV Total energy + Delta-G solvation = -3025.223695 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.017 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.43139 -37.90890 -37.53752 -36.77786 -36.45522 -33.97978 -32.84441 -31.79958 -28.39622 -26.43028 -23.75592 -22.82095 -20.20044 -19.94831 -18.51201 -18.09422 -17.08323 -16.93983 -16.47603 -16.39897 -16.11318 -15.35287 -14.85766 -14.59480 -14.30670 -13.80410 -13.67262 -13.10639 -12.99409 -12.98121 -12.86524 -12.81443 -12.56827 -12.42753 -12.32330 -12.07081 -11.93764 -11.83224 -11.64742 -10.23106 -9.93110 -9.68857 -8.33091 -5.88086 -0.59387 0.09896 0.26539 1.05878 1.49252 1.52468 1.60454 2.15686 2.50387 2.56396 2.95693 3.20134 3.43130 3.49501 3.81810 4.02786 4.18606 4.19524 4.37531 4.56236 4.70839 4.89684 5.07622 5.13348 5.25968 5.36993 5.60567 5.73219 6.73921 6.95726 7.31798 8.85060 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.025392 B = 0.005236 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.428477 B = 5346.467647 C = 5979.131715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.019 4.019 3 Si 0.983 3.017 4 H -0.280 1.280 5 H -0.281 1.281 6 H -0.252 1.252 7 C -0.314 4.314 8 H 0.112 0.888 9 N -0.979 5.979 10 S 2.583 3.417 11 O -0.997 6.997 12 O -1.010 7.010 13 C -0.582 4.582 14 C -0.086 4.086 15 C -0.119 4.119 16 C -0.098 4.098 17 C -0.107 4.107 18 C -0.044 4.044 19 Cl -0.066 7.066 20 C -0.123 4.123 21 H 0.273 0.727 22 H 0.404 0.596 23 H 0.157 0.843 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.174 0.826 27 H 0.164 0.836 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.878 -11.242 7.856 16.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.221 4.221 3 Si 0.807 3.193 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.176 1.176 7 C -0.448 4.448 8 H 0.129 0.871 9 N -0.730 5.730 10 S 2.679 3.321 11 O -0.987 6.987 12 O -1.000 7.000 13 C -0.709 4.709 14 C -0.088 4.088 15 C -0.138 4.138 16 C -0.115 4.115 17 C -0.126 4.126 18 C -0.071 4.071 19 Cl -0.037 7.037 20 C -0.143 4.143 21 H 0.082 0.918 22 H 0.238 0.762 23 H 0.175 0.825 24 H 0.166 0.834 25 H 0.167 0.833 26 H 0.191 0.809 27 H 0.182 0.818 28 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.085 -11.811 7.108 17.080 hybrid contribution -0.063 1.444 0.313 1.478 sum 10.022 -10.367 7.421 16.217 Atomic orbital electron populations 1.69799 1.07328 1.28745 1.50958 1.26037 0.96391 1.02484 0.97191 0.85072 0.78595 0.77280 0.78399 1.20558 1.20594 1.17601 1.19583 0.92598 0.83792 1.48874 0.87079 1.51427 1.16714 1.19522 1.85303 1.06393 0.74000 0.72548 0.79178 1.93469 1.66518 1.86393 1.52342 1.93423 1.57353 1.60520 1.88692 1.29690 1.13150 1.02688 1.25346 1.19194 0.93926 0.94309 1.01413 1.21651 1.01584 0.92529 0.98056 1.21553 0.93115 0.98627 0.98250 1.21498 0.96082 0.97656 0.97351 1.21037 0.87186 0.96089 1.02767 1.98363 1.18722 1.98685 1.87963 1.21203 0.93943 0.98564 1.00556 0.91810 0.76174 0.82488 0.83353 0.83325 0.80861 0.81815 0.84673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.24 13.06 21.65 0.28 -49.95 15 2 C -0.02 -0.98 5.50 84.86 0.47 -0.51 15 3 Si 0.98 39.96 29.55 68.60 2.03 41.98 15 4 H -0.28 -11.44 7.11 99.48 0.71 -10.73 15 5 H -0.28 -11.21 7.11 99.48 0.71 -10.50 15 6 H -0.25 -9.45 7.11 99.48 0.71 -8.75 15 7 C -0.31 -15.73 9.49 84.03 0.80 -14.94 15 8 H 0.11 5.16 7.82 -2.91 -0.02 5.14 15 9 N -0.98 -47.13 5.65 -54.27 -0.31 -47.43 15 10 S 2.58 109.40 5.41 -56.49 -0.31 109.09 15 11 O -1.00 -48.40 17.76 -127.65 -2.27 -50.67 15 12 O -1.01 -46.01 18.08 -127.65 -2.31 -48.31 15 13 C -0.58 -18.53 6.13 71.24 0.44 -18.10 15 14 C -0.09 -2.57 5.14 -19.87 -0.10 -2.67 15 15 C -0.12 -2.98 9.70 22.27 0.22 -2.76 15 16 C -0.10 -1.89 10.05 22.26 0.22 -1.67 15 17 C -0.11 -2.15 9.83 22.29 0.22 -1.93 15 18 C -0.04 -1.12 6.32 22.32 0.14 -0.98 15 19 Cl -0.07 -1.54 28.96 -2.72 -0.08 -1.61 15 20 C -0.12 -3.61 9.49 22.29 0.21 -3.40 15 21 H 0.27 13.97 8.31 -92.71 -0.77 13.20 15 22 H 0.40 20.37 7.98 -96.75 -0.77 19.59 15 23 H 0.16 4.28 8.09 -2.39 -0.02 4.26 15 24 H 0.15 4.44 8.08 -2.39 -0.02 4.42 15 25 H 0.15 3.25 8.06 -2.91 -0.02 3.23 15 26 H 0.17 2.00 8.06 -2.91 -0.02 1.97 15 27 H 0.16 2.25 8.06 -2.91 -0.02 2.23 15 28 H 0.14 3.97 8.06 -2.91 -0.02 3.94 15 Total: -1.00 -65.93 283.95 0.08 -65.85 By element: Atomic # 1 Polarization: 27.59 SS G_CDS: 0.42 Total: 28.01 kcal Atomic # 6 Polarization: -49.57 SS G_CDS: 2.61 Total: -46.96 kcal Atomic # 7 Polarization: -97.36 SS G_CDS: -0.02 Total: -97.39 kcal Atomic # 8 Polarization: -94.41 SS G_CDS: -4.57 Total: -98.98 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.98 kcal Atomic # 16 Polarization: 109.40 SS G_CDS: -0.31 Total: 109.09 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.61 kcal Total: -65.93 0.08 -65.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335123270.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.489 kcal (2) G-P(sol) polarization free energy of solvation -65.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds