Wall clock time and date at job start Mon Mar 30 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00175 * 2 1 4 4 H 1.48503 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47235 * 300.00175 * 3 2 1 6 6 H 1.48496 * 109.47193 * 60.00245 * 3 2 1 7 7 C 1.37880 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99990 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00084 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99849 * 180.02562 * 10 9 7 12 12 O 1.21572 * 119.99801 * 359.97438 * 11 10 9 13 13 C 1.47648 * 119.99830 * 179.97438 * 11 10 9 14 14 C 1.39704 * 120.12307 * 0.02562 * 13 11 10 15 15 C 1.37975 * 119.86629 * 179.97438 * 14 13 11 16 16 F 1.35103 * 119.94288 * 180.02562 * 15 14 13 17 17 C 1.38905 * 120.10954 * 359.97438 * 15 14 13 18 18 F 1.35098 * 119.87987 * 179.97438 * 17 15 14 19 19 C 1.38505 * 120.24474 * 0.02562 * 17 15 14 20 20 C 1.38054 * 120.13578 * 0.02562 * 19 17 15 21 21 Cl 1.73605 * 120.06123 * 180.02562 * 20 19 17 22 22 H 0.97000 * 119.99872 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47062 * 60.00379 * 9 7 2 24 24 H 1.08993 * 109.46990 * 300.00002 * 9 7 2 25 25 H 0.96997 * 120.00513 * 359.97438 * 10 9 7 26 26 H 1.07997 * 120.06783 * 0.25029 * 14 13 11 27 27 H 1.07999 * 119.93466 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8835 -0.0025 12 8 0.5583 -5.1055 -0.0017 13 6 2.7130 -6.0057 -0.0043 14 6 4.0871 -5.7534 -0.0047 15 6 4.9790 -6.8061 -0.0059 16 9 6.3081 -6.5639 -0.0058 17 6 4.5126 -8.1145 -0.0061 18 9 5.3900 -9.1418 -0.0078 19 6 3.1513 -8.3699 -0.0057 20 6 2.2499 -7.3243 -0.0056 21 17 0.5440 -7.6466 -0.0044 22 1 -0.4850 0.8401 -0.0004 23 1 0.6239 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 3.1565 -3.4356 -0.0028 26 1 4.4505 -4.7364 0.0004 27 1 2.7942 -9.3892 -0.0055 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335339664.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:08 Heat of formation + Delta-G solvation = -102.755389 kcal Electronic energy + Delta-G solvation = -18075.097923 eV Core-core repulsion = 14495.148697 eV Total energy + Delta-G solvation = -3579.949225 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 275.027 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.79133 -48.85563 -39.97574 -37.94371 -36.43620 -34.38560 -32.60090 -31.35536 -30.50575 -27.36111 -24.41078 -23.54749 -22.30201 -20.25719 -18.74871 -17.83484 -17.58357 -16.75936 -16.65165 -15.90435 -15.25950 -15.15821 -14.92422 -14.65654 -14.64736 -14.35833 -13.78005 -13.30078 -13.08470 -12.77638 -12.07544 -11.90414 -11.86031 -11.26477 -11.19902 -10.96226 -10.93509 -10.34429 -9.45560 -9.45245 -9.13945 -8.89339 -8.80411 -8.01603 -6.23081 -4.30532 0.22750 0.51587 1.92814 2.57577 3.20128 3.27442 3.30008 3.37110 3.69402 3.70181 3.92443 4.15442 4.29058 4.51980 4.82696 5.05032 5.13672 5.29433 5.33003 5.40703 5.71205 6.20488 7.18382 7.23282 7.42025 7.55840 7.88074 8.42721 8.65014 8.88343 9.36064 10.86999 Molecular weight = 275.03amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.004754 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.184978 B = 5887.764269 C = 7125.805587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.250 3.750 10 N -0.700 5.700 11 C 0.535 3.465 12 O -0.520 6.520 13 C -0.095 4.095 14 C -0.085 4.085 15 C 0.066 3.934 16 F -0.122 7.122 17 C 0.095 3.905 18 F -0.121 7.121 19 C -0.130 4.130 20 C 0.023 3.977 21 Cl -0.006 7.006 22 H 0.266 0.734 23 H 0.032 0.968 24 H 0.032 0.968 25 H 0.389 0.611 26 H 0.162 0.838 27 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 -15.533 -0.010 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.082 0.918 9 C 0.130 3.870 10 N -0.349 5.349 11 C 0.318 3.682 12 O -0.398 6.398 13 C -0.100 4.100 14 C -0.104 4.104 15 C 0.046 3.954 16 F -0.100 7.100 17 C 0.074 3.926 18 F -0.099 7.099 19 C -0.149 4.149 20 C -0.005 4.005 21 Cl 0.024 6.976 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.223 0.777 26 H 0.179 0.821 27 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 7.536 -15.568 -0.008 17.296 hybrid contribution 1.267 0.823 -0.002 1.510 sum 8.803 -14.745 -0.010 17.173 Atomic orbital electron populations 1.69978 1.06102 1.27330 1.48663 1.24941 0.94922 0.99483 0.94568 0.86353 0.79835 0.82886 0.77811 1.19597 1.20757 1.20752 1.21232 0.93318 0.90334 1.53555 0.91788 1.19208 0.88139 0.81512 0.98173 1.46468 1.11365 1.05767 1.71321 1.17817 0.87818 0.82980 0.79580 1.90862 1.15137 1.84207 1.49617 1.20125 0.93340 0.94038 1.02476 1.21298 0.91193 0.99738 0.98220 1.17479 0.78780 0.92067 1.07070 1.91569 1.29601 1.94892 1.93965 1.17561 0.87371 0.83041 1.04620 1.91561 1.67824 1.56826 1.93684 1.20862 0.89601 1.00814 1.03634 1.20750 0.88201 0.92253 0.99323 1.98451 1.08329 1.95145 1.95720 0.92404 0.95037 0.95026 0.77680 0.82084 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.29 13.29 55.43 0.74 -24.56 15 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 7 C -0.55 -14.22 9.28 -34.44 -0.32 -14.54 15 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 15 9 C 0.25 6.28 5.43 -5.19 -0.03 6.25 15 10 N -0.70 -13.82 5.50 -62.49 -0.34 -14.16 15 11 C 0.53 10.09 7.76 -12.42 -0.10 9.99 15 12 O -0.52 -11.48 13.96 5.30 0.07 -11.41 15 13 C -0.10 -1.38 5.88 -104.94 -0.62 -2.00 15 14 C -0.08 -1.02 9.51 -39.13 -0.37 -1.39 15 15 C 0.07 0.77 7.30 -39.43 -0.29 0.48 15 16 F -0.12 -1.45 17.17 2.25 0.04 -1.41 15 17 C 0.09 1.04 7.31 -39.24 -0.29 0.76 15 18 F -0.12 -1.33 17.17 2.25 0.04 -1.29 15 19 C -0.13 -1.36 9.79 -39.55 -0.39 -1.75 15 20 C 0.02 0.31 6.35 -39.08 -0.25 0.06 15 21 Cl -0.01 -0.09 26.01 -51.86 -1.35 -1.44 15 22 H 0.27 7.14 8.31 -40.82 -0.34 6.80 15 23 H 0.03 0.88 8.14 -51.93 -0.42 0.45 15 24 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 25 H 0.39 6.46 6.35 -40.82 -0.26 6.20 15 26 H 0.16 1.67 6.40 -52.49 -0.34 1.33 15 27 H 0.16 1.26 8.06 -52.49 -0.42 0.84 15 LS Contribution 271.01 15.07 4.08 4.08 Total: -1.00 -29.59 271.01 -5.88 -35.47 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -1.40 Total: -0.08 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -2.74 Total: -0.48 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.39 Total: -38.72 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.07 Total: -11.41 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.08 Total: -2.71 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -1.35 Total: -1.44 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.59 -5.88 -35.47 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335339664.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.289 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds