Wall clock time and date at job start Mon Mar 30 2020 01:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00175 * 2 1 4 4 H 1.48503 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47235 * 300.00175 * 3 2 1 6 6 H 1.48496 * 109.47193 * 60.00245 * 3 2 1 7 7 C 1.37880 * 119.99645 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99990 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00084 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46921 * 179.97438 * 9 7 2 11 11 C 1.34784 * 119.99849 * 180.02562 * 10 9 7 12 12 O 1.21572 * 119.99801 * 359.97438 * 11 10 9 13 13 C 1.47648 * 119.99830 * 179.97438 * 11 10 9 14 14 C 1.39704 * 120.12307 * 0.02562 * 13 11 10 15 15 C 1.37975 * 119.86629 * 179.97438 * 14 13 11 16 16 F 1.35103 * 119.94288 * 180.02562 * 15 14 13 17 17 C 1.38905 * 120.10954 * 359.97438 * 15 14 13 18 18 F 1.35098 * 119.87987 * 179.97438 * 17 15 14 19 19 C 1.38505 * 120.24474 * 0.02562 * 17 15 14 20 20 C 1.38054 * 120.13578 * 0.02562 * 19 17 15 21 21 Cl 1.73605 * 120.06123 * 180.02562 * 20 19 17 22 22 H 0.97000 * 119.99872 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47062 * 60.00379 * 9 7 2 24 24 H 1.08993 * 109.46990 * 300.00002 * 9 7 2 25 25 H 0.96997 * 120.00513 * 359.97438 * 10 9 7 26 26 H 1.07997 * 120.06783 * 0.25029 * 14 13 11 27 27 H 1.07999 * 119.93466 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8835 -0.0025 12 8 0.5583 -5.1055 -0.0017 13 6 2.7130 -6.0057 -0.0043 14 6 4.0871 -5.7534 -0.0047 15 6 4.9790 -6.8061 -0.0059 16 9 6.3081 -6.5639 -0.0058 17 6 4.5126 -8.1145 -0.0061 18 9 5.3900 -9.1418 -0.0078 19 6 3.1513 -8.3699 -0.0057 20 6 2.2499 -7.3243 -0.0056 21 17 0.5440 -7.6466 -0.0044 22 1 -0.4850 0.8401 -0.0004 23 1 0.6239 -2.5567 -0.8904 24 1 0.6246 -2.5571 0.8896 25 1 3.1565 -3.4356 -0.0028 26 1 4.4505 -4.7364 0.0004 27 1 2.7942 -9.3892 -0.0055 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335339664.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:08 Heat of formation + Delta-G solvation = -121.412297 kcal Electronic energy + Delta-G solvation = -18075.906947 eV Core-core repulsion = 14495.148697 eV Total energy + Delta-G solvation = -3580.758250 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 275.027 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.71557 -49.78129 -41.26073 -39.27066 -37.51825 -36.19525 -34.45788 -32.52724 -31.55031 -29.24034 -25.75730 -24.78099 -23.79083 -21.75746 -20.01063 -18.98373 -18.61891 -18.16813 -17.58051 -17.47287 -16.87891 -16.23955 -16.16941 -16.15124 -15.82358 -15.57182 -14.93953 -14.49035 -14.40920 -14.21910 -13.92219 -13.66646 -12.91171 -12.86732 -12.75096 -12.32252 -12.31844 -12.12869 -11.43891 -10.80848 -10.65745 -10.42287 -9.99553 -9.75173 -8.28085 -6.43870 -0.82661 -0.42093 0.87963 1.45076 1.45441 1.46305 1.58829 2.17903 2.34250 2.40877 2.49232 2.96600 3.07787 3.21053 3.47362 3.74628 4.00106 4.26108 4.34631 4.47239 4.67860 5.13581 5.26721 5.27011 5.44185 5.64650 5.84904 6.65051 6.79009 7.21766 7.36607 8.84018 Molecular weight = 275.03amu Principal moments of inertia in cm(-1) A = 0.022338 B = 0.004754 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.184978 B = 5887.764269 C = 7125.805587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.268 3.732 10 N -0.698 5.698 11 C 0.535 3.465 12 O -0.558 6.558 13 C -0.112 4.112 14 C -0.071 4.071 15 C 0.070 3.930 16 F -0.121 7.121 17 C 0.110 3.890 18 F -0.115 7.115 19 C -0.111 4.111 20 C 0.019 3.981 21 Cl -0.022 7.022 22 H 0.268 0.732 23 H -0.005 1.005 24 H -0.005 1.005 25 H 0.406 0.594 26 H 0.177 0.823 27 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.318 -16.148 -0.011 19.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.804 3.196 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.145 3.855 10 N -0.348 5.348 11 C 0.322 3.678 12 O -0.438 6.438 13 C -0.116 4.116 14 C -0.091 4.091 15 C 0.049 3.951 16 F -0.099 7.099 17 C 0.089 3.911 18 F -0.094 7.094 19 C -0.130 4.130 20 C -0.009 4.009 21 Cl 0.007 6.993 22 H 0.077 0.923 23 H 0.013 0.987 24 H 0.013 0.987 25 H 0.243 0.757 26 H 0.194 0.806 27 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 10.242 -16.216 -0.009 19.180 hybrid contribution 0.488 0.876 -0.001 1.003 sum 10.730 -15.340 -0.011 18.720 Atomic orbital electron populations 1.70131 1.08162 1.28458 1.49991 1.25994 0.95726 1.03701 0.93949 0.85164 0.79201 0.77623 0.77573 1.17602 1.20629 1.20620 1.21643 0.94381 0.90512 1.52789 0.89716 1.18620 0.88478 0.83607 0.94762 1.46135 1.11428 1.05159 1.72078 1.18381 0.88151 0.83450 0.77861 1.90839 1.17194 1.84830 1.50960 1.19641 0.93331 0.92705 1.05933 1.21295 0.89974 1.00790 0.97018 1.17422 0.78664 0.92100 1.06885 1.91581 1.29503 1.94915 1.93933 1.17567 0.87468 0.82871 1.03208 1.91588 1.67700 1.56627 1.93453 1.21016 0.88808 1.01426 1.01759 1.20841 0.87811 0.92446 0.99846 1.98450 1.09851 1.95136 1.95842 0.92282 0.98718 0.98702 0.75664 0.80575 0.79159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.29 21.45 0.28 -54.31 15 2 C 0.01 0.33 5.46 84.65 0.46 0.79 15 3 Si 0.98 41.24 29.54 68.60 2.03 43.27 15 4 H -0.25 -9.77 7.11 99.48 0.71 -9.06 15 5 H -0.28 -11.67 7.11 99.48 0.71 -10.97 15 6 H -0.28 -11.67 7.11 99.48 0.71 -10.96 15 7 C -0.56 -28.99 9.28 25.60 0.24 -28.75 15 8 H 0.08 3.97 7.60 -2.91 -0.02 3.95 15 9 C 0.27 13.98 5.43 85.63 0.46 14.45 15 10 N -0.70 -27.82 5.50 -469.89 -2.58 -30.40 15 11 C 0.54 20.47 7.76 86.73 0.67 21.14 15 12 O -0.56 -25.55 13.96 -3.94 -0.06 -25.61 15 13 C -0.11 -3.11 5.88 -20.07 -0.12 -3.23 15 14 C -0.07 -1.54 9.51 22.56 0.21 -1.33 15 15 C 0.07 1.40 7.30 22.37 0.16 1.56 15 16 F -0.12 -2.51 17.17 44.97 0.77 -1.73 15 17 C 0.11 2.04 7.31 22.49 0.16 2.20 15 18 F -0.12 -2.13 17.17 44.97 0.77 -1.35 15 19 C -0.11 -1.99 9.79 22.29 0.22 -1.77 15 20 C 0.02 0.48 6.35 22.59 0.14 0.62 15 21 Cl -0.02 -0.64 26.01 -2.72 -0.07 -0.71 15 22 H 0.27 14.74 8.31 -92.71 -0.77 13.97 15 23 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 15 24 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 15 25 H 0.41 13.09 6.35 -92.71 -0.59 12.50 15 26 H 0.18 3.20 6.40 -2.91 -0.02 3.18 15 27 H 0.19 2.26 8.06 -2.91 -0.02 2.24 15 Total: -1.00 -65.39 271.01 4.43 -60.96 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: 0.66 Total: 4.21 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 2.62 Total: 5.68 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.30 Total: -84.71 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.06 Total: -25.61 kcal Atomic # 9 Polarization: -4.63 SS G_CDS: 1.54 Total: -3.09 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.27 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.07 Total: -0.71 kcal Total: -65.39 4.43 -60.96 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335339664.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.450 kcal (2) G-P(sol) polarization free energy of solvation -65.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds