Wall clock time and date at job start Mon Mar 30 2020 01:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39676 * 119.99798 * 2 1 4 4 C 1.38909 * 120.07575 * 354.38065 * 3 2 1 5 5 C 1.38105 * 119.92387 * 179.76923 * 4 3 2 6 6 C 1.38282 * 120.07697 * 0.50071 * 5 4 3 7 7 C 1.38285 * 120.15035 * 359.75314 * 6 5 4 8 8 C 1.38115 * 120.07279 * 359.97438 * 7 6 5 9 9 C 1.46499 * 120.00418 * 180.02562 * 2 1 3 10 10 C 1.53126 * 109.51941 * 65.41083 * 9 2 1 11 11 C 1.53041 * 109.27658 * 182.44033 * 10 9 2 12 12 N 1.46847 * 109.52000 * 59.18293 * 11 10 9 13 13 C 1.46905 * 110.99974 * 174.16023 * 12 11 10 14 14 C 1.50701 * 109.46860 * 64.72732 * 13 12 11 15 15 H 1.07994 * 120.00659 * 355.04255 * 14 13 12 16 16 C 1.37879 * 119.99827 * 175.04754 * 14 13 12 17 17 N 1.31517 * 119.99973 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00208 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47049 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47107 * 119.99785 * 18 16 14 21 21 H 1.48500 * 109.47150 * 239.99928 * 18 16 14 22 22 C 1.46856 * 111.19902 * 298.25362 * 12 11 10 23 23 C 1.53032 * 109.51940 * 61.74504 * 22 12 11 24 24 H 1.09010 * 109.47005 * 269.99531 * 1 2 3 25 25 H 1.08993 * 109.47291 * 29.99871 * 1 2 3 26 26 H 1.08997 * 109.47109 * 150.00069 * 1 2 3 27 27 H 1.08004 * 120.03482 * 359.97438 * 4 3 2 28 28 H 1.08008 * 119.96394 * 180.25318 * 5 4 3 29 29 H 1.07999 * 119.92699 * 179.72156 * 6 5 4 30 30 H 1.07998 * 119.97016 * 179.97438 * 7 6 5 31 31 H 1.07990 * 120.03588 * 179.97438 * 8 7 6 32 32 H 1.08997 * 109.57480 * 185.56941 * 9 2 1 33 33 H 1.09003 * 109.50159 * 62.50469 * 10 9 2 34 34 H 1.09001 * 109.53677 * 302.40478 * 10 9 2 35 35 H 1.09001 * 109.46567 * 299.16663 * 11 10 9 36 36 H 1.08992 * 109.45151 * 179.19087 * 11 10 9 37 37 H 1.09000 * 109.46773 * 304.73168 * 13 12 11 38 38 H 1.09000 * 109.47291 * 184.72599 * 13 12 11 39 39 H 0.97003 * 120.00379 * 180.02562 * 17 16 14 40 40 H 1.08993 * 109.45974 * 181.75979 * 22 12 11 41 41 H 1.08999 * 109.46289 * 301.73022 * 22 12 11 42 42 H 1.09000 * 109.50137 * 180.87832 * 23 22 12 43 43 H 1.09001 * 109.50599 * 60.76475 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1633 1.2097 0.0000 4 6 1.4753 2.4106 -0.1177 5 6 2.1685 3.6051 -0.1125 6 6 3.5468 3.6060 -0.0008 7 6 4.2354 2.4120 0.1113 8 6 3.5479 1.2141 0.1124 9 6 2.1976 -1.2687 -0.0006 10 6 1.9333 -2.0115 -1.3133 11 6 2.6518 -3.3624 -1.2828 12 7 2.1630 -4.1525 -0.1455 13 6 2.7287 -5.5081 -0.1645 14 6 4.2211 -5.4324 0.0307 15 1 4.7118 -4.4715 0.0760 16 6 4.9602 -6.5901 0.1513 17 7 4.3626 -7.7605 0.0965 18 14 6.8102 -6.4964 0.3925 19 1 7.2344 -5.0736 0.4187 20 1 7.1754 -7.1462 1.6768 21 1 7.4913 -7.1950 -0.7270 22 6 2.4480 -3.4811 1.1291 23 6 1.7236 -2.1338 1.1705 24 1 -0.3633 -0.0001 1.0278 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 0.3992 2.4104 -0.2098 28 1 1.6339 4.5395 -0.1999 29 1 4.0869 4.5413 -0.0016 30 1 5.3118 2.4160 0.1979 31 1 4.0862 0.2820 0.1996 32 1 3.2653 -1.0738 0.0992 33 1 2.3076 -1.4191 -2.1483 34 1 0.8617 -2.1717 -1.4321 35 1 3.7247 -3.2010 -1.1785 36 1 2.4538 -3.8998 -2.2101 37 1 2.5111 -5.9792 -1.1230 38 1 2.2867 -6.0976 0.6388 39 1 4.8825 -8.5750 0.1817 40 1 2.1023 -4.1049 1.9533 41 1 3.5219 -3.3191 1.2221 42 1 1.9479 -1.6288 2.1101 43 1 0.6486 -2.2960 1.0915 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000369003225.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:38 Heat of formation + Delta-G solvation = 36.298162 kcal Electronic energy + Delta-G solvation = -21367.118928 eV Core-core repulsion = 18411.937828 eV Total energy + Delta-G solvation = -2955.181100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.84819 -38.25754 -35.92582 -33.08658 -31.58698 -30.87844 -30.31573 -29.40799 -27.07765 -25.75475 -23.70625 -22.52711 -22.31413 -21.50213 -20.32075 -19.07912 -17.61351 -16.41945 -15.84521 -15.47085 -15.00261 -14.62654 -14.43858 -14.19773 -14.12698 -13.69666 -13.55379 -13.09504 -12.94077 -12.62686 -12.51988 -12.12396 -11.96874 -11.82725 -11.40731 -11.13295 -10.99791 -10.88113 -10.67342 -10.60626 -10.38977 -10.30740 -10.14651 -9.79229 -9.56213 -9.55447 -8.88606 -8.46416 -7.21037 -7.17090 -6.05637 -4.15140 1.48349 1.67333 3.18396 3.24087 3.32573 3.35508 3.95089 4.37847 4.78374 4.88696 5.00408 5.08060 5.18417 5.22657 5.25395 5.27978 5.44769 5.47274 5.55327 5.60270 5.72614 5.76122 5.78361 5.95674 5.98083 6.08295 6.09830 6.26417 6.29909 6.37882 6.46809 6.54407 6.59699 6.68303 6.70498 6.81131 6.94760 7.26277 7.38496 7.49538 7.62700 7.86735 8.02680 8.26039 8.27502 8.95503 9.52081 10.99288 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.004247 C = 0.003784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.824397 B = 6592.036458 C = 7398.022833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.624 5.624 3 C 0.224 3.776 4 C -0.206 4.206 5 C -0.074 4.074 6 C -0.190 4.190 7 C -0.071 4.071 8 C -0.201 4.201 9 C 0.148 3.852 10 C -0.124 4.124 11 C 0.066 3.934 12 N -0.542 5.542 13 C 0.187 3.813 14 C -0.550 4.550 15 H 0.057 0.943 16 C 0.065 3.935 17 N -0.890 5.890 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.283 1.283 22 C 0.068 3.932 23 C -0.123 4.123 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.027 0.973 38 H 0.035 0.965 39 H 0.262 0.738 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.059 0.941 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.806 18.778 -0.213 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.332 5.332 3 C 0.122 3.878 4 C -0.228 4.228 5 C -0.093 4.093 6 C -0.210 4.210 7 C -0.090 4.090 8 C -0.223 4.223 9 C 0.045 3.955 10 C -0.163 4.163 11 C -0.064 4.064 12 N -0.266 5.266 13 C 0.061 3.939 14 C -0.589 4.589 15 H 0.075 0.925 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.062 4.062 23 C -0.162 4.162 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.137 0.863 28 H 0.134 0.866 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.141 0.859 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.086 0.914 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.412 18.353 -0.251 19.443 hybrid contribution 1.984 -0.086 0.218 1.998 sum -4.428 18.267 -0.033 18.796 Atomic orbital electron populations 1.21580 0.80118 1.02411 1.00959 1.46707 1.04786 1.02798 1.78944 1.17906 0.91307 0.85902 0.92732 1.20663 0.99659 0.91284 1.11225 1.20833 0.94223 0.96975 0.97267 1.20834 0.94352 0.97667 1.08155 1.20890 0.99336 0.92030 0.96762 1.20816 0.92584 0.98796 1.10126 1.21221 0.96428 0.82024 0.95786 1.22017 1.01606 0.96356 0.96325 1.21820 0.97029 0.92138 0.95383 1.62473 1.58638 1.04600 1.00893 1.19748 0.92548 0.83736 0.97851 1.21782 0.93912 0.92557 1.50612 0.92490 1.24964 0.98420 0.95424 0.94958 1.69951 1.35685 0.97349 1.49908 0.86606 0.85870 0.78118 0.77843 1.19854 1.20912 1.20917 1.21798 0.98082 0.92788 0.93507 1.21998 1.01296 0.95938 0.96968 0.93583 0.91834 0.91102 0.86263 0.86641 0.86886 0.86455 0.85867 0.89554 0.92319 0.91523 0.94450 0.91439 0.95440 0.94718 0.92840 0.91344 0.94243 0.92272 0.91475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 9.13 59.85 0.55 1.54 16 2 N -0.62 -8.13 2.90 -171.85 -0.50 -8.62 16 3 C 0.22 2.98 6.54 -83.79 -0.55 2.44 16 4 C -0.21 -2.43 9.25 -39.38 -0.36 -2.79 16 5 C -0.07 -0.81 10.04 -39.61 -0.40 -1.20 16 6 C -0.19 -2.10 10.04 -39.55 -0.40 -2.50 16 7 C -0.07 -0.85 10.04 -39.61 -0.40 -1.25 16 8 C -0.20 -2.69 9.32 -39.38 -0.37 -3.06 16 9 C 0.15 2.16 2.52 -67.80 -0.17 1.99 16 10 C -0.12 -1.89 5.48 -26.65 -0.15 -2.04 16 11 C 0.07 1.23 5.11 -3.83 -0.02 1.21 16 12 N -0.54 -11.27 4.86 -236.11 -1.15 -12.42 16 13 C 0.19 4.73 5.12 -4.97 -0.03 4.70 16 14 C -0.55 -14.83 7.72 -34.44 -0.27 -15.10 16 15 H 0.06 1.53 5.86 -52.49 -0.31 1.22 16 16 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 17 N -0.89 -25.95 13.29 55.43 0.74 -25.22 16 18 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.07 1.28 5.03 -3.83 -0.02 1.26 16 23 C -0.12 -1.88 5.33 -26.65 -0.14 -2.02 16 24 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 25 H 0.06 0.59 6.00 -51.93 -0.31 0.27 16 26 H 0.07 0.76 6.66 -51.93 -0.35 0.41 16 27 H 0.12 1.21 6.03 -52.48 -0.32 0.90 16 28 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 30 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.68 5.74 -52.49 -0.30 1.37 16 32 H 0.09 1.32 5.32 -51.93 -0.28 1.05 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.99 6.82 -51.93 -0.35 0.64 16 35 H 0.04 0.76 6.86 -51.93 -0.36 0.41 16 36 H 0.07 1.29 8.08 -51.93 -0.42 0.87 16 37 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.07 1.33 8.12 -51.93 -0.42 0.91 16 41 H 0.04 0.81 6.74 -51.93 -0.35 0.46 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.07 1.00 7.44 -51.93 -0.39 0.61 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -28.81 330.83 -10.42 -39.22 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -6.66 Total: 0.95 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -2.81 Total: -15.11 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.91 Total: -46.26 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.81 -10.42 -39.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000369003225.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.523 kcal (2) G-P(sol) polarization free energy of solvation -28.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds