Wall clock time and date at job start Mon Mar 30 2020 01:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50699 * 119.99826 * 2 1 4 4 N 1.46906 * 109.46609 * 125.96147 * 3 2 1 5 5 C 1.46903 * 110.99737 * 199.25107 * 4 3 2 6 6 C 1.50705 * 109.46815 * 66.05221 * 5 4 3 7 7 H 1.07996 * 120.00064 * 359.97438 * 6 5 4 8 8 C 1.37877 * 120.00029 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00017 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00090 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.47042 * 359.97438 * 10 8 6 12 12 H 1.48504 * 109.47254 * 119.99812 * 10 8 6 13 13 H 1.48507 * 109.47389 * 239.99776 * 10 8 6 14 14 C 1.46897 * 110.99975 * 75.30638 * 4 3 2 15 15 C 1.50703 * 109.47026 * 194.40368 * 14 4 3 16 16 C 1.38128 * 120.03727 * 253.82724 * 15 14 4 17 17 C 1.38267 * 120.06941 * 180.27753 * 16 15 14 18 18 C 1.38299 * 120.15393 * 359.73763 * 17 16 15 19 19 C 1.38078 * 120.07622 * 359.97438 * 18 17 16 20 20 C 1.38894 * 120.03914 * 73.57070 * 15 14 4 21 21 N 1.39677 * 120.07049 * 0.02562 * 20 15 14 22 22 C 1.46908 * 110.99555 * 122.08237 * 21 20 15 23 23 C 1.46894 * 110.99977 * 246.03483 * 21 20 15 24 24 H 1.08002 * 120.00315 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00236 * 179.97438 * 1 2 3 26 26 H 1.07999 * 119.99828 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47308 * 5.96474 * 3 2 1 28 28 H 1.08997 * 109.47303 * 245.95593 * 3 2 1 29 29 H 1.08997 * 109.47190 * 186.04284 * 5 4 3 30 30 H 1.08994 * 109.47422 * 306.04929 * 5 4 3 31 31 H 0.96999 * 120.00092 * 180.02562 * 9 8 6 32 32 H 1.09003 * 109.47849 * 74.40032 * 14 4 3 33 33 H 1.09007 * 109.46879 * 314.39774 * 14 4 3 34 34 H 1.07994 * 119.96147 * 0.02562 * 16 15 14 35 35 H 1.08001 * 119.92014 * 179.76921 * 17 16 15 36 36 H 1.08003 * 119.96449 * 180.02562 * 18 17 16 37 37 H 1.07997 * 120.04017 * 179.97438 * 19 18 17 38 38 H 1.09000 * 109.46890 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.46951 * 60.00158 * 22 21 20 40 40 H 1.08991 * 109.47245 * 299.99565 * 22 21 20 41 41 H 1.08997 * 109.47453 * 291.12148 * 23 21 20 42 42 H 1.09002 * 109.47140 * 51.12368 * 23 21 20 43 43 H 1.09003 * 109.47302 * 171.12088 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 3.0126 1.3224 1.1211 5 6 3.4266 2.6955 1.4391 6 6 2.2428 3.4693 1.9597 7 1 1.2792 2.9892 2.0454 8 6 2.3899 4.7902 2.3267 9 7 3.5634 5.3747 2.2229 10 14 0.9224 5.7494 2.9714 11 1 -0.2741 4.8701 2.9902 12 1 1.2088 6.2261 4.3483 13 1 0.6658 6.9149 2.0874 14 6 4.1776 0.4737 0.8377 15 6 4.9434 0.2297 2.1125 16 6 6.1485 0.8694 2.3284 17 6 6.8544 0.6417 3.4952 18 6 6.3545 -0.2226 4.4522 19 6 5.1476 -0.8607 4.2454 20 6 4.4357 -0.6345 3.0740 21 7 3.2151 -1.2792 2.8610 22 6 3.3725 -2.7385 2.9243 23 6 2.2015 -0.8171 3.8185 24 1 -0.5401 0.9353 0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 1.3599 2.1308 0.1068 28 1 2.6077 1.4105 -0.9385 29 1 4.2081 2.6727 2.1986 30 1 3.8085 3.1776 0.5392 31 1 3.6670 6.3039 2.4815 32 1 4.8238 0.9728 0.1155 33 1 3.8420 -0.4788 0.4275 34 1 6.5416 1.5450 1.5832 35 1 7.7982 1.1402 3.6599 36 1 6.9083 -0.3979 5.3627 37 1 4.7579 -1.5358 4.9930 38 1 2.4072 -3.2156 2.7555 39 1 3.7502 -3.0209 3.9069 40 1 4.0768 -3.0615 2.1577 41 1 2.4590 -1.1679 4.8179 42 1 2.1670 0.2724 3.8136 43 1 1.2263 -1.2127 3.5347 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428851363.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:54 Heat of formation + Delta-G solvation = 48.769493 kcal Electronic energy + Delta-G solvation = -22028.537412 eV Core-core repulsion = 19073.897110 eV Total energy + Delta-G solvation = -2954.640303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.93115 -38.43352 -37.24769 -34.90879 -34.19799 -32.19092 -30.74111 -29.17497 -28.31959 -27.20404 -25.60914 -25.25444 -22.91547 -22.24840 -21.26636 -20.30030 -18.49468 -17.80716 -16.91108 -16.62126 -16.40599 -16.18440 -15.79009 -15.45770 -15.27128 -15.06581 -14.52852 -14.40183 -14.00487 -13.71140 -13.38250 -13.31458 -13.13925 -12.95282 -12.90766 -12.72943 -12.56648 -12.47706 -12.42255 -12.11294 -11.91714 -11.84069 -11.50035 -11.17350 -10.58499 -10.09829 -9.67712 -9.39725 -9.18407 -8.81778 -8.16411 -6.24527 0.48274 0.52104 1.38882 1.39678 1.52832 1.62217 2.41314 2.83854 3.12792 3.16152 3.64112 4.01890 4.03623 4.21008 4.26077 4.35915 4.43444 4.50634 4.53027 4.57370 4.58449 4.72740 4.75985 4.78493 4.86166 4.96881 5.00801 5.05143 5.14187 5.19506 5.24008 5.31855 5.37494 5.54521 5.62948 5.68332 5.74626 5.89921 6.02872 6.13460 6.14369 6.20143 6.48099 6.63686 6.76559 6.93121 7.44210 8.94534 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013704 B = 0.007254 C = 0.005803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.644713 B = 3858.890214 C = 4824.025428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.122 4.122 3 C 0.085 3.915 4 N -0.509 5.509 5 C 0.213 3.787 6 C -0.511 4.511 7 H 0.059 0.941 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.961 3.039 11 H -0.263 1.263 12 H -0.281 1.281 13 H -0.279 1.279 14 C 0.111 3.889 15 C -0.067 4.067 16 C -0.124 4.124 17 C -0.132 4.132 18 C -0.116 4.116 19 C -0.160 4.160 20 C 0.105 3.895 21 N -0.502 5.502 22 C 0.030 3.970 23 C 0.050 3.950 24 H 0.083 0.917 25 H 0.116 0.884 26 H 0.115 0.885 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.008 0.992 30 H -0.049 1.049 31 H 0.262 0.738 32 H 0.011 0.989 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.033 0.967 40 H 0.065 0.935 41 H 0.030 0.970 42 H 0.043 0.957 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -15.957 1.662 16.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.140 4.140 3 C -0.042 4.042 4 N -0.232 5.232 5 C 0.086 3.914 6 C -0.549 4.549 7 H 0.078 0.922 8 C -0.196 4.196 9 N -0.575 5.575 10 Si 0.786 3.214 11 H -0.187 1.187 12 H -0.207 1.207 13 H -0.205 1.205 14 C -0.017 4.017 15 C -0.069 4.069 16 C -0.143 4.143 17 C -0.150 4.150 18 C -0.135 4.135 19 C -0.180 4.180 20 C 0.010 3.990 21 N -0.222 5.222 22 C -0.116 4.116 23 C -0.096 4.096 24 H 0.101 0.899 25 H 0.134 0.866 26 H 0.133 0.867 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.026 0.974 30 H -0.032 1.032 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.155 0.845 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.084 0.916 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.701 -15.879 1.609 15.976 hybrid contribution 0.377 1.373 0.298 1.455 sum 1.078 -14.506 1.907 14.671 Atomic orbital electron populations 1.23785 0.95538 1.01799 1.02150 1.22726 0.95868 0.97136 0.98295 1.21133 0.95286 0.96726 0.91089 1.62019 1.12928 1.10528 1.37727 1.19339 0.95226 0.84125 0.92660 1.21451 0.96263 0.95540 1.41675 0.92235 1.25833 0.98602 0.98818 0.96304 1.70098 1.24750 1.12725 1.49885 0.85455 0.79653 0.78417 0.77850 1.18744 1.20672 1.20512 1.20806 0.90747 0.97697 0.92440 1.19831 0.94137 0.96171 0.96716 1.21170 0.95480 0.98972 0.98722 1.21320 1.00808 0.99081 0.93766 1.21250 0.96000 0.96675 0.99549 1.21777 0.96626 1.02007 0.97635 1.18651 0.91229 0.96262 0.92838 1.59377 1.05039 1.05764 1.52065 1.22481 1.02879 0.85744 1.00527 1.22176 0.94922 1.00317 0.92233 0.89897 0.86581 0.86701 0.92015 0.95888 0.97387 1.03174 0.92964 0.97055 0.89064 0.87187 0.84461 0.83662 0.84936 0.89825 0.94848 0.91572 0.95161 0.93815 0.90358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.58 14.32 67.79 0.97 -4.61 16 2 C -0.12 -3.90 9.34 25.65 0.24 -3.66 16 3 C 0.09 3.42 5.26 85.56 0.45 3.87 16 4 N -0.51 -22.28 4.38 -909.92 -3.98 -26.26 16 5 C 0.21 11.56 4.57 85.56 0.39 11.95 16 6 C -0.51 -29.40 8.24 25.60 0.21 -29.19 16 7 H 0.06 3.40 7.30 -2.91 -0.02 3.38 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -57.18 13.29 21.45 0.28 -56.90 16 10 Si 0.96 45.28 29.54 68.60 2.03 47.30 16 11 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 12 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 C 0.11 4.24 4.48 85.56 0.38 4.62 16 15 C -0.07 -2.48 4.61 -19.73 -0.09 -2.57 16 16 C -0.12 -4.47 8.95 22.25 0.20 -4.27 16 17 C -0.13 -4.01 10.04 22.29 0.22 -3.78 16 18 C -0.12 -3.17 10.04 22.25 0.22 -2.95 16 19 C -0.16 -4.60 8.70 22.40 0.19 -4.40 16 20 C 0.10 3.43 4.67 38.21 0.18 3.61 16 21 N -0.50 -14.69 4.26 -745.09 -3.17 -17.87 16 22 C 0.03 0.66 9.31 127.69 1.19 1.84 16 23 C 0.05 1.50 9.33 127.69 1.19 2.69 16 24 H 0.08 2.53 7.84 -2.91 -0.02 2.50 16 25 H 0.12 2.65 8.06 -2.91 -0.02 2.63 16 26 H 0.12 3.38 7.22 -2.91 -0.02 3.36 16 27 H 0.06 2.78 6.23 -2.39 -0.01 2.76 16 28 H 0.02 0.91 8.01 -2.39 -0.02 0.89 16 29 H 0.01 0.48 6.64 -2.39 -0.02 0.46 16 30 H -0.05 -2.96 8.12 -2.39 -0.02 -2.98 16 31 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.01 0.45 7.87 -2.39 -0.02 0.43 16 33 H 0.09 3.13 6.69 -2.38 -0.02 3.12 16 34 H 0.11 4.02 7.99 -2.91 -0.02 3.99 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.15 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.13 3.18 7.10 -2.91 -0.02 3.16 16 38 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.03 0.65 7.00 -2.39 -0.02 0.64 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.03 0.79 7.78 -2.39 -0.02 0.77 16 42 H 0.04 1.67 8.07 -2.39 -0.02 1.66 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -65.67 350.87 2.53 -63.14 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.95 Total: 16.87 kcal Atomic # 6 Polarization: -32.70 SS G_CDS: 6.42 Total: -26.28 kcal Atomic # 7 Polarization: -94.16 SS G_CDS: -6.87 Total: -101.03 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.67 2.53 -63.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428851363.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.914 kcal (2) G-P(sol) polarization free energy of solvation -65.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds