Wall clock time and date at job start Mon Mar 30 2020 01:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99724 * 2 1 4 4 C 1.50703 * 109.47204 * 293.95084 * 3 2 1 5 5 H 1.07997 * 119.99765 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00158 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00223 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99807 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46998 * 90.00548 * 8 6 4 10 10 H 1.48509 * 109.47103 * 210.00168 * 8 6 4 11 11 H 1.48496 * 109.47419 * 330.00290 * 8 6 4 12 12 C 1.46893 * 111.00036 * 123.94950 * 2 1 3 13 13 C 1.53002 * 109.47445 * 164.01603 * 12 2 1 14 14 H 1.08990 * 109.47263 * 58.50419 * 13 12 2 15 15 O 1.42901 * 109.46499 * 298.51037 * 13 12 2 16 16 C 1.52996 * 109.47536 * 178.51319 * 13 12 2 17 17 N 1.46895 * 109.47412 * 184.99590 * 16 13 12 18 18 C 1.46890 * 111.00621 * 179.97438 * 17 16 13 19 19 C 1.53782 * 113.62061 * 205.00123 * 18 17 16 20 20 C 1.53782 * 87.08157 * 220.01749 * 19 18 17 21 21 C 1.53001 * 113.61379 * 270.87980 * 20 19 18 22 22 F 1.39900 * 113.60953 * 139.98213 * 20 19 18 23 23 C 1.53781 * 87.08206 * 25.43197 * 20 19 18 24 24 H 1.09002 * 109.47173 * 301.52932 * 1 2 3 25 25 H 1.09004 * 109.47065 * 61.53472 * 1 2 3 26 26 H 1.08998 * 109.46825 * 181.53395 * 1 2 3 27 27 H 1.09001 * 109.47810 * 53.95143 * 3 2 1 28 28 H 1.08999 * 109.47398 * 173.95572 * 3 2 1 29 29 H 0.96994 * 120.00649 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47451 * 44.01100 * 12 2 1 31 31 H 1.09003 * 109.47537 * 284.01185 * 12 2 1 32 32 H 0.96703 * 114.00413 * 299.99774 * 15 13 12 33 33 H 1.08994 * 109.47232 * 64.99706 * 16 13 12 34 34 H 1.09003 * 109.46745 * 304.99797 * 16 13 12 35 35 H 1.00900 * 111.00369 * 303.95527 * 17 16 13 36 36 H 1.09004 * 112.91031 * 336.25468 * 18 17 16 37 37 H 1.08999 * 113.61360 * 105.46563 * 19 18 17 38 38 H 1.09000 * 113.61194 * 334.56690 * 19 18 17 39 39 H 1.09003 * 109.46876 * 60.00686 * 21 20 19 40 40 H 1.09004 * 109.46747 * 180.02562 * 21 20 19 41 41 H 1.08990 * 109.47107 * 300.00261 * 21 20 19 42 42 H 1.09000 * 113.61305 * 89.11142 * 23 20 19 43 43 H 1.09002 * 113.61451 * 219.93665 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 2.7118 4.0020 -0.6151 8 14 1.5829 4.1867 -3.1384 9 1 0.2703 4.8666 -2.9973 10 1 2.6250 5.1883 -3.4791 11 1 1.5007 3.1709 -4.2184 12 6 1.9954 -0.7659 1.1376 13 6 3.4729 -1.0838 0.8985 14 1 4.0282 -0.1548 0.7698 15 8 3.6034 -1.8837 -0.2784 16 6 4.0308 -1.8493 2.1000 17 7 5.4754 -2.0500 1.9249 18 6 6.0469 -2.7829 3.0624 19 6 7.5464 -2.5172 3.2759 20 6 7.6868 -4.0159 3.5909 21 6 7.4821 -4.3533 5.0691 22 9 8.8420 -4.5952 3.0550 23 6 6.4317 -4.2342 2.7295 24 1 -0.3633 0.5374 0.8760 25 1 -0.3633 0.4898 -0.9035 26 1 -0.3633 -1.0273 0.0275 27 1 1.5611 1.9275 0.8309 28 1 3.0797 1.3445 0.1082 29 1 2.9863 4.9181 -0.7770 30 1 1.4357 -1.6955 1.2400 31 1 1.8934 -0.1780 2.0498 32 1 3.1334 -2.7277 -0.2345 33 1 3.5360 -2.8175 2.1755 34 1 3.8511 -1.2775 3.0104 35 1 5.6722 -2.5216 1.0549 36 1 5.4527 -2.6863 3.9711 37 1 7.7584 -1.8704 4.1272 38 1 8.0689 -2.2107 2.3697 39 1 6.4815 -4.0488 5.3760 40 1 7.5965 -5.4274 5.2158 41 1 8.2228 -3.8242 5.6685 42 1 6.6494 -4.3969 1.6740 43 1 5.7444 -4.9744 3.1391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571315198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:31 Heat of formation + Delta-G solvation = -78.961821 kcal Electronic energy + Delta-G solvation = -21506.709961 eV Core-core repulsion = 18115.761588 eV Total energy + Delta-G solvation = -3390.948373 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 274.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.76759 -39.37410 -37.90616 -35.61317 -33.79254 -32.45048 -30.06002 -28.64777 -27.26330 -26.18424 -25.48244 -23.49083 -22.42800 -21.56487 -20.03556 -19.34478 -16.67313 -16.63048 -16.24216 -15.86571 -15.71667 -15.37452 -14.81157 -14.62361 -14.54173 -14.03826 -13.75443 -13.39664 -13.33140 -13.10859 -12.65713 -12.56244 -12.40030 -12.29337 -11.92652 -11.59077 -11.40212 -11.37332 -11.16916 -10.90927 -10.84958 -10.68902 -10.63302 -10.45913 -10.31749 -9.72368 -9.57617 -9.10216 -8.44793 -8.38107 -7.18947 -5.97822 -3.98269 3.35260 3.41477 3.46652 3.83119 3.92855 4.10434 4.26277 4.41683 4.46127 4.53903 4.74089 4.98490 5.01972 5.15619 5.22938 5.29330 5.35942 5.39513 5.41242 5.44354 5.51460 5.60486 5.69835 5.71660 5.78479 5.81673 6.03991 6.07403 6.09517 6.34415 6.54403 6.72180 6.94837 7.30665 7.33892 7.34466 7.83559 8.07242 8.14191 8.23880 8.59204 9.08692 9.65372 11.13315 Molecular weight = 274.18amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.003144 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.773226 B = 8902.749943 C = 9372.565164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.027 3.973 13 C 0.113 3.887 14 H 0.113 0.887 15 O -0.541 6.541 16 C 0.030 3.970 17 N -0.669 5.669 18 C 0.074 3.926 19 C -0.144 4.144 20 C 0.086 3.914 21 C -0.154 4.154 22 F -0.205 7.205 23 C -0.185 4.185 24 H 0.010 0.990 25 H 0.073 0.927 26 H 0.042 0.958 27 H -0.012 1.012 28 H 0.033 0.967 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.359 0.641 33 H 0.030 0.970 34 H 0.079 0.921 35 H 0.352 0.648 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.498 -17.069 11.338 21.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 C -0.103 4.103 13 C 0.053 3.947 14 H 0.131 0.869 15 O -0.344 6.344 16 C -0.100 4.100 17 N -0.300 5.300 18 C -0.038 4.038 19 C -0.182 4.182 20 C 0.068 3.932 21 C -0.211 4.211 22 F -0.185 7.185 23 C -0.224 4.224 24 H 0.028 0.972 25 H 0.092 0.908 26 H 0.060 0.940 27 H 0.006 0.994 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.204 0.796 33 H 0.048 0.952 34 H 0.097 0.903 35 H 0.173 0.827 36 H 0.118 0.882 37 H 0.099 0.901 38 H 0.118 0.882 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.283 -15.983 10.959 20.372 hybrid contribution -1.062 -0.413 0.036 1.140 sum 5.222 -16.395 10.995 20.420 Atomic orbital electron populations 1.22196 0.88918 0.98806 1.00942 1.62049 1.06451 1.17948 1.39094 1.19787 0.95631 0.81377 0.96512 1.21145 1.34613 0.96782 1.01714 0.91942 1.24983 0.95347 0.97392 0.96956 1.69951 1.38463 1.11398 1.34116 0.86508 0.77883 0.79213 0.83878 1.20852 1.21258 1.19755 1.22655 0.95752 0.98140 0.93753 1.22023 0.94845 0.94681 0.83108 0.86905 1.86710 1.75136 1.33268 1.39271 1.22736 0.87844 0.98949 1.00498 1.60245 1.12677 1.52653 1.04468 1.22791 0.95254 0.90330 0.95377 1.23769 0.96936 0.93962 1.03559 1.22223 0.82129 0.94750 0.94144 1.22025 1.03465 1.02939 0.92662 1.92833 1.52121 1.86141 1.87428 1.24410 0.97078 0.99581 1.01370 0.97170 0.90785 0.93955 0.99423 0.94881 0.92981 0.92323 0.95082 0.79624 0.95220 0.90303 0.82694 0.88163 0.90086 0.88243 0.90354 0.91230 0.90996 0.88573 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.32 60.07 0.56 1.34 16 2 N -0.53 -11.48 4.60 -244.37 -1.12 -12.61 16 3 C 0.19 5.06 4.57 -4.98 -0.02 5.04 16 4 C -0.50 -14.46 8.54 -34.44 -0.29 -14.76 16 5 H 0.06 1.78 7.10 -52.49 -0.37 1.41 16 6 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.03 0.46 4.63 -3.83 -0.02 0.44 16 13 C 0.11 1.81 3.23 -26.73 -0.09 1.73 16 14 H 0.11 2.25 6.55 -51.93 -0.34 1.91 16 15 O -0.54 -8.82 12.75 -35.23 -0.45 -9.27 16 16 C 0.03 0.36 5.20 -3.83 -0.02 0.34 16 17 N -0.67 -7.95 6.62 -105.87 -0.70 -8.65 16 18 C 0.07 0.69 3.83 -66.90 -0.26 0.44 16 19 C -0.14 -1.38 7.36 -25.92 -0.19 -1.57 16 20 C 0.09 0.78 2.29 -89.81 -0.21 0.58 16 21 C -0.15 -1.03 9.45 37.16 0.35 -0.68 16 22 F -0.20 -2.39 17.27 2.25 0.04 -2.36 16 23 C -0.18 -1.58 7.15 -25.92 -0.19 -1.77 16 24 H 0.01 0.19 8.13 -51.93 -0.42 -0.23 16 25 H 0.07 1.54 6.90 -51.93 -0.36 1.18 16 26 H 0.04 0.68 7.97 -51.93 -0.41 0.27 16 27 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 28 H 0.03 0.93 6.38 -51.93 -0.33 0.60 16 29 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 30 H 0.06 0.84 7.88 -51.93 -0.41 0.43 16 31 H 0.03 0.54 8.05 -51.93 -0.42 0.12 16 32 H 0.36 4.35 9.05 45.56 0.41 4.76 16 33 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 35 H 0.35 4.23 7.76 -39.29 -0.30 3.93 16 36 H 0.10 0.84 7.38 -51.93 -0.38 0.46 16 37 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 0.43 7.34 -51.93 -0.38 0.05 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.10 0.88 7.82 -51.93 -0.41 0.47 16 43 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 LS Contribution 348.05 15.07 5.25 5.25 Total: -1.00 -32.00 348.05 -8.38 -40.38 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.64 Total: 4.02 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -0.47 Total: -7.41 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: -1.09 Total: -47.66 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: -0.45 Total: -9.27 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.04 Total: -2.36 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.00 -8.38 -40.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571315198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.577 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds