Wall clock time and date at job start Mon Mar 30 2020 01:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46899 * 110.99724 * 2 1 4 4 C 1.50703 * 109.47204 * 293.95084 * 3 2 1 5 5 H 1.07997 * 119.99765 * 0.02562 * 4 3 2 6 6 C 1.37879 * 120.00158 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00223 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99807 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.46998 * 90.00548 * 8 6 4 10 10 H 1.48509 * 109.47103 * 210.00168 * 8 6 4 11 11 H 1.48496 * 109.47419 * 330.00290 * 8 6 4 12 12 C 1.46893 * 111.00036 * 123.94950 * 2 1 3 13 13 C 1.53002 * 109.47445 * 164.01603 * 12 2 1 14 14 H 1.08990 * 109.47263 * 58.50419 * 13 12 2 15 15 O 1.42901 * 109.46499 * 298.51037 * 13 12 2 16 16 C 1.52996 * 109.47536 * 178.51319 * 13 12 2 17 17 N 1.46895 * 109.47412 * 184.99590 * 16 13 12 18 18 C 1.46890 * 111.00621 * 179.97438 * 17 16 13 19 19 C 1.53782 * 113.62061 * 205.00123 * 18 17 16 20 20 C 1.53782 * 87.08157 * 220.01749 * 19 18 17 21 21 C 1.53001 * 113.61379 * 270.87980 * 20 19 18 22 22 F 1.39900 * 113.60953 * 139.98213 * 20 19 18 23 23 C 1.53781 * 87.08206 * 25.43197 * 20 19 18 24 24 H 1.09002 * 109.47173 * 301.52932 * 1 2 3 25 25 H 1.09004 * 109.47065 * 61.53472 * 1 2 3 26 26 H 1.08998 * 109.46825 * 181.53395 * 1 2 3 27 27 H 1.09001 * 109.47810 * 53.95143 * 3 2 1 28 28 H 1.08999 * 109.47398 * 173.95572 * 3 2 1 29 29 H 0.96994 * 120.00649 * 179.97438 * 7 6 4 30 30 H 1.08997 * 109.47451 * 44.01100 * 12 2 1 31 31 H 1.09003 * 109.47537 * 284.01185 * 12 2 1 32 32 H 0.96703 * 114.00413 * 299.99774 * 15 13 12 33 33 H 1.08994 * 109.47232 * 64.99706 * 16 13 12 34 34 H 1.09003 * 109.46745 * 304.99797 * 16 13 12 35 35 H 1.00900 * 111.00369 * 303.95527 * 17 16 13 36 36 H 1.09004 * 112.91031 * 336.25468 * 18 17 16 37 37 H 1.08999 * 113.61360 * 105.46563 * 19 18 17 38 38 H 1.09000 * 113.61194 * 334.56690 * 19 18 17 39 39 H 1.09003 * 109.46876 * 60.00686 * 21 20 19 40 40 H 1.09004 * 109.46747 * 180.02562 * 21 20 19 41 41 H 1.08990 * 109.47107 * 300.00261 * 21 20 19 42 42 H 1.09000 * 113.61305 * 89.11142 * 23 20 19 43 43 H 1.09002 * 113.61451 * 219.93665 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2985 5 1 1.0740 1.5114 -2.0485 6 6 2.0267 3.3495 -1.5285 7 7 2.7118 4.0020 -0.6151 8 14 1.5829 4.1867 -3.1384 9 1 0.2703 4.8666 -2.9973 10 1 2.6250 5.1883 -3.4791 11 1 1.5007 3.1709 -4.2184 12 6 1.9954 -0.7659 1.1376 13 6 3.4729 -1.0838 0.8985 14 1 4.0282 -0.1548 0.7698 15 8 3.6034 -1.8837 -0.2784 16 6 4.0308 -1.8493 2.1000 17 7 5.4754 -2.0500 1.9249 18 6 6.0469 -2.7829 3.0624 19 6 7.5464 -2.5172 3.2759 20 6 7.6868 -4.0159 3.5909 21 6 7.4821 -4.3533 5.0691 22 9 8.8420 -4.5952 3.0550 23 6 6.4317 -4.2342 2.7295 24 1 -0.3633 0.5374 0.8760 25 1 -0.3633 0.4898 -0.9035 26 1 -0.3633 -1.0273 0.0275 27 1 1.5611 1.9275 0.8309 28 1 3.0797 1.3445 0.1082 29 1 2.9863 4.9181 -0.7770 30 1 1.4357 -1.6955 1.2400 31 1 1.8934 -0.1780 2.0498 32 1 3.1334 -2.7277 -0.2345 33 1 3.5360 -2.8175 2.1755 34 1 3.8511 -1.2775 3.0104 35 1 5.6722 -2.5216 1.0549 36 1 5.4527 -2.6863 3.9711 37 1 7.7584 -1.8704 4.1272 38 1 8.0689 -2.2107 2.3697 39 1 6.4815 -4.0488 5.3760 40 1 7.5965 -5.4274 5.2158 41 1 8.2228 -3.8242 5.6685 42 1 6.6494 -4.3969 1.6740 43 1 5.7444 -4.9744 3.1391 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571315198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:31 Heat of formation + Delta-G solvation = -104.224438 kcal Electronic energy + Delta-G solvation = -21507.805430 eV Core-core repulsion = 18115.761588 eV Total energy + Delta-G solvation = -3392.043842 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 274.180 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.58394 -40.21159 -39.21035 -37.16244 -34.76926 -34.59889 -31.16883 -29.63925 -29.16334 -26.89274 -26.82953 -25.23012 -23.32705 -22.83591 -21.67317 -20.09693 -18.61422 -17.53526 -17.44453 -17.11035 -16.56903 -16.54300 -16.21154 -16.10893 -15.53973 -15.46581 -15.19659 -14.75542 -14.21312 -14.04159 -13.99491 -13.73990 -13.56709 -13.13441 -13.11209 -13.03372 -12.85798 -12.59263 -12.54210 -12.37028 -12.29283 -12.15622 -12.11976 -11.61198 -11.48215 -11.30338 -11.15762 -10.70377 -10.59676 -9.30519 -8.94126 -8.19500 -6.28933 1.39844 1.42206 1.53766 2.40902 2.90711 3.12994 3.23478 3.33346 3.46243 3.64279 3.67131 3.74931 3.84390 4.06115 4.18534 4.31637 4.42833 4.48619 4.52499 4.61190 4.64108 4.65400 4.74570 4.79010 4.80411 4.83297 4.94705 4.98356 5.08773 5.14239 5.19519 5.27874 5.32714 5.36813 5.65674 6.07163 6.11926 6.35992 6.41335 6.66679 6.87078 7.06864 7.40356 8.91711 Molecular weight = 274.18amu Principal moments of inertia in cm(-1) A = 0.028028 B = 0.003144 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.773226 B = 8902.749943 C = 9372.565164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.523 4.523 5 H 0.060 0.940 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.027 3.973 13 C 0.121 3.879 14 H 0.062 0.938 15 O -0.561 6.561 16 C 0.045 3.955 17 N -0.689 5.689 18 C 0.077 3.923 19 C -0.151 4.151 20 C 0.081 3.919 21 C -0.151 4.151 22 F -0.223 7.223 23 C -0.177 4.177 24 H 0.008 0.992 25 H 0.053 0.947 26 H 0.084 0.916 27 H -0.042 1.042 28 H 0.004 0.996 29 H 0.264 0.736 30 H 0.099 0.901 31 H 0.028 0.972 32 H 0.379 0.621 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.350 0.650 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.374 -18.780 11.755 22.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.198 4.198 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.191 1.191 12 C -0.102 4.102 13 C 0.061 3.939 14 H 0.080 0.920 15 O -0.366 6.366 16 C -0.085 4.085 17 N -0.320 5.320 18 C -0.033 4.033 19 C -0.190 4.190 20 C 0.063 3.937 21 C -0.208 4.208 22 F -0.204 7.204 23 C -0.216 4.216 24 H 0.026 0.974 25 H 0.072 0.928 26 H 0.102 0.898 27 H -0.024 1.024 28 H 0.022 0.978 29 H 0.073 0.927 30 H 0.117 0.883 31 H 0.046 0.954 32 H 0.227 0.773 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.170 0.830 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.146 -17.728 11.389 21.690 hybrid contribution -0.691 0.075 -0.081 0.700 sum 4.455 -17.653 11.308 21.432 Atomic orbital electron populations 1.22220 0.87473 1.01158 0.99847 1.61940 1.07875 1.15128 1.41774 1.19378 0.93785 0.83914 0.94608 1.21484 1.34676 0.97426 1.02527 0.92146 1.25924 0.95069 0.98141 1.00712 1.70081 1.39410 1.11831 1.36238 0.85395 0.78008 0.78070 0.79229 1.19576 1.20757 1.19065 1.22792 0.96715 0.98873 0.91840 1.21751 0.93765 0.93577 0.84783 0.92038 1.86659 1.75759 1.34523 1.39704 1.22522 0.88080 0.99706 0.98209 1.60198 1.12772 1.53787 1.05259 1.22847 0.94878 0.90546 0.95052 1.23792 0.97279 0.94874 1.03014 1.22485 0.81581 0.93974 0.95695 1.22052 1.04607 1.03439 0.90696 1.92796 1.53305 1.86375 1.87903 1.24331 0.97022 0.99390 1.00887 0.97357 0.92802 0.89776 1.02428 0.97775 0.92743 0.88282 0.95395 0.77283 0.92119 0.90009 0.83024 0.86396 0.89379 0.90216 0.88652 0.90638 0.90664 0.89528 0.88538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.32 127.69 1.19 2.74 16 2 N -0.54 -23.40 4.60 -927.05 -4.27 -27.67 16 3 C 0.21 11.47 4.57 85.56 0.39 11.86 16 4 C -0.52 -30.68 8.54 25.60 0.22 -30.46 16 5 H 0.06 3.49 7.10 -2.91 -0.02 3.47 16 6 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 7 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 8 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 C 0.03 0.88 4.63 86.31 0.40 1.28 16 13 C 0.12 3.86 3.23 30.59 0.10 3.96 16 14 H 0.06 2.61 6.55 -2.39 -0.02 2.59 16 15 O -0.56 -17.82 12.75 -148.98 -1.90 -19.72 16 16 C 0.04 0.99 5.20 86.30 0.45 1.44 16 17 N -0.69 -15.80 6.62 -488.88 -3.24 -19.03 16 18 C 0.08 1.32 3.83 45.45 0.17 1.49 16 19 C -0.15 -2.81 7.36 31.12 0.23 -2.58 16 20 C 0.08 1.36 2.29 -10.27 -0.02 1.34 16 21 C -0.15 -1.68 9.45 71.98 0.68 -1.00 16 22 F -0.22 -5.13 17.27 44.97 0.78 -4.35 16 23 C -0.18 -2.69 7.15 31.12 0.22 -2.47 16 24 H 0.01 0.30 8.13 -2.39 -0.02 0.28 16 25 H 0.05 2.22 6.90 -2.39 -0.02 2.20 16 26 H 0.08 2.45 7.97 -2.39 -0.02 2.43 16 27 H -0.04 -2.48 8.11 -2.39 -0.02 -2.50 16 28 H 0.00 0.25 6.38 -2.39 -0.02 0.24 16 29 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.10 2.46 7.88 -2.39 -0.02 2.44 16 31 H 0.03 0.94 8.05 -2.39 -0.02 0.92 16 32 H 0.38 8.28 9.05 -74.06 -0.67 7.61 16 33 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.79 8.13 -2.39 -0.02 1.77 16 35 H 0.35 8.25 7.76 -89.69 -0.70 7.56 16 36 H 0.12 1.61 7.38 -2.38 -0.02 1.60 16 37 H 0.09 1.47 8.10 -2.39 -0.02 1.45 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.09 0.74 7.34 -2.39 -0.02 0.72 16 40 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.09 1.50 7.82 -2.39 -0.02 1.48 16 43 H 0.10 1.11 8.10 -2.39 -0.02 1.09 16 Total: -1.00 -71.49 348.05 -2.19 -73.68 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.37 Total: 19.00 kcal Atomic # 6 Polarization: -16.46 SS G_CDS: 4.49 Total: -11.97 kcal Atomic # 7 Polarization: -97.04 SS G_CDS: -7.22 Total: -104.26 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -1.90 Total: -19.72 kcal Atomic # 9 Polarization: -5.13 SS G_CDS: 0.78 Total: -4.35 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.49 -2.19 -73.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571315198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.549 kcal (2) G-P(sol) polarization free energy of solvation -71.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds