Wall clock time and date at job start Mon Mar 30 2020 01:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46893 * 111.00644 * 2 1 4 4 C 1.50706 * 109.47176 * 66.04281 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00200 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00139 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47145 * 89.99836 * 8 6 4 10 10 H 1.48496 * 109.47547 * 210.00333 * 8 6 4 11 11 H 1.48499 * 109.47030 * 330.00237 * 8 6 4 12 12 C 1.46902 * 110.99945 * 236.04460 * 2 1 3 13 13 C 1.53004 * 109.47221 * 293.95790 * 12 2 1 14 14 H 1.08999 * 109.47234 * 59.99729 * 13 12 2 15 15 O 1.42905 * 109.46963 * 300.00067 * 13 12 2 16 16 C 1.52998 * 109.47497 * 179.97438 * 13 12 2 17 17 N 1.46897 * 109.47152 * 184.99995 * 16 13 12 18 18 C 1.46898 * 110.99812 * 179.97438 * 17 16 13 19 19 H 1.08999 * 110.43874 * 327.54252 * 18 17 16 20 20 C 1.54887 * 110.48611 * 90.22548 * 18 17 16 21 21 C 1.54887 * 102.75092 * 156.61975 * 20 18 17 22 22 C 1.54262 * 104.19780 * 322.05786 * 21 20 18 23 23 H 1.08990 * 110.03361 * 264.32600 * 22 21 20 24 24 F 1.39906 * 110.07448 * 142.91392 * 22 21 20 25 25 C 1.53878 * 106.59432 * 23.60986 * 22 21 20 26 26 H 1.08997 * 109.47186 * 59.99756 * 1 2 3 27 27 H 1.08993 * 109.47654 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47132 * 300.00059 * 1 2 3 29 29 H 1.09001 * 109.46739 * 306.04690 * 3 2 1 30 30 H 1.09000 * 109.47767 * 186.04949 * 3 2 1 31 31 H 0.96999 * 120.00061 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46970 * 53.95301 * 12 2 1 33 33 H 1.09003 * 109.47253 * 173.96025 * 12 2 1 34 34 H 0.96697 * 113.99620 * 299.99879 * 15 13 12 35 35 H 1.08997 * 109.46713 * 305.00142 * 16 13 12 36 36 H 1.08998 * 109.46884 * 64.99364 * 16 13 12 37 37 H 1.00899 * 111.00375 * 56.04934 * 17 16 13 38 38 H 1.08998 * 110.76053 * 274.93381 * 20 18 17 39 39 H 1.09002 * 110.76070 * 38.30395 * 20 18 17 40 40 H 1.09004 * 110.49078 * 203.37663 * 21 20 18 41 41 H 1.09005 * 110.48777 * 80.74012 * 21 20 18 42 42 H 1.08997 * 110.03053 * 240.71069 * 25 22 21 43 43 H 1.09004 * 110.03403 * 119.28899 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5112 2.0487 6 6 2.0269 3.3494 1.5285 7 7 1.7145 3.9389 2.6618 8 14 3.0003 4.2760 0.2310 9 1 2.0638 4.9796 -0.6817 10 1 3.8867 5.2676 0.8914 11 1 3.8242 3.3172 -0.5482 12 6 1.9954 -0.7660 -1.1376 13 6 1.6313 -2.2427 -0.9704 14 1 0.5471 -2.3475 -0.9323 15 8 2.2007 -2.7392 0.2427 16 6 2.1790 -3.0404 -2.1554 17 7 1.7284 -4.4351 -2.0570 18 6 2.2359 -5.2329 -3.1813 19 1 2.3169 -4.6185 -4.0780 20 6 3.6064 -5.8607 -2.8254 21 6 3.6835 -7.0773 -3.7809 22 6 2.2398 -7.6194 -3.8205 23 1 2.1261 -8.4317 -3.1029 24 9 1.9317 -8.0713 -5.1082 25 6 1.3194 -6.4466 -3.4393 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5612 1.9272 -0.8309 30 1 3.0798 1.3443 -0.1083 31 1 1.9892 4.8550 2.8238 32 1 1.5610 -0.3873 -2.0628 33 1 3.0797 -0.6612 -1.1756 34 1 3.1650 -2.6772 0.2787 35 1 1.8141 -2.6055 -3.0859 36 1 3.2685 -3.0087 -2.1423 37 1 0.7223 -4.4871 -2.0023 38 1 4.4164 -5.1597 -3.0266 39 1 3.6243 -6.1850 -1.7849 40 1 4.3633 -7.8315 -3.3843 41 1 4.0001 -6.7621 -4.7752 42 1 0.7590 -6.6899 -2.5366 43 1 0.6332 -6.2290 -4.2578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577502735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:43 Heat of formation + Delta-G solvation = -102.336242 kcal Electronic energy + Delta-G solvation = -21359.925359 eV Core-core repulsion = 17967.963395 eV Total energy + Delta-G solvation = -3391.961964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 274.180 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.94188 -38.89256 -37.77963 -35.66626 -33.94707 -32.45723 -30.08702 -29.01895 -27.89506 -27.01382 -25.35258 -23.29408 -21.42067 -21.02940 -20.53855 -20.08153 -17.20799 -16.89829 -16.49096 -16.23026 -15.88447 -15.24636 -15.16179 -14.66143 -14.50610 -14.23381 -13.96015 -13.91703 -13.76627 -13.15949 -12.71067 -12.48367 -12.26078 -11.97110 -11.84684 -11.59180 -11.53605 -11.30524 -11.16975 -11.05463 -11.00341 -10.92716 -10.72772 -10.69466 -10.24616 -9.91413 -9.52783 -9.22091 -8.62932 -8.58026 -7.35245 -6.04843 -4.02041 3.26576 3.34409 3.35596 3.70678 3.94421 4.06808 4.27631 4.41116 4.52824 4.66465 4.75149 4.86694 4.91362 5.03469 5.07781 5.14699 5.19138 5.27811 5.29861 5.38985 5.48943 5.52875 5.55117 5.59628 5.71615 5.81303 5.91708 5.96331 6.08814 6.20151 6.30115 6.68368 6.79774 6.82263 6.98124 7.12549 7.58656 7.88995 7.98935 8.12888 8.66376 9.05005 9.56644 11.08399 Molecular weight = 274.18amu Principal moments of inertia in cm(-1) A = 0.044132 B = 0.002796 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.301584 B =10011.924368 C =10201.820444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.519 5.519 3 C 0.162 3.838 4 C -0.507 4.507 5 H 0.082 0.918 6 C 0.067 3.933 7 N -0.900 5.900 8 Si 0.876 3.124 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.268 1.268 12 C 0.021 3.979 13 C 0.118 3.882 14 H 0.093 0.907 15 O -0.534 6.534 16 C 0.026 3.974 17 N -0.670 5.670 18 C 0.081 3.919 19 H 0.052 0.948 20 C -0.111 4.111 21 C -0.150 4.150 22 C 0.088 3.912 23 H 0.089 0.911 24 F -0.216 7.216 25 C -0.155 4.155 26 H 0.009 0.991 27 H 0.049 0.951 28 H 0.079 0.921 29 H -0.019 1.019 30 H 0.027 0.973 31 H 0.263 0.737 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.369 0.631 35 H 0.035 0.965 36 H 0.076 0.924 37 H 0.342 0.658 38 H 0.069 0.931 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 -21.127 -14.623 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.242 5.242 3 C 0.035 3.965 4 C -0.546 4.546 5 H 0.100 0.900 6 C -0.134 4.134 7 N -0.539 5.539 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.193 1.193 12 C -0.109 4.109 13 C 0.057 3.943 14 H 0.110 0.890 15 O -0.337 6.337 16 C -0.104 4.104 17 N -0.302 5.302 18 C -0.029 4.029 19 H 0.070 0.930 20 C -0.149 4.149 21 C -0.189 4.189 22 C 0.051 3.949 23 H 0.107 0.893 24 F -0.197 7.197 25 C -0.193 4.193 26 H 0.027 0.973 27 H 0.068 0.932 28 H 0.098 0.902 29 H -0.001 1.001 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.215 0.785 35 H 0.054 0.946 36 H 0.094 0.906 37 H 0.161 0.839 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.112 -21.476 -13.547 25.479 hybrid contribution 0.240 1.561 -2.472 2.934 sum 2.352 -19.915 -16.019 25.666 Atomic orbital electron populations 1.22275 0.88340 0.99557 1.01035 1.61854 1.07303 1.15968 1.39093 1.20215 0.95087 0.84132 0.97018 1.21040 1.35483 0.97132 1.00904 0.90030 1.24906 0.95814 0.97369 0.95325 1.69894 1.46937 1.13232 1.23873 0.86858 0.80620 0.80032 0.82160 1.20431 1.21119 1.19314 1.22784 1.00516 0.94370 0.93258 1.21842 0.98253 0.90471 0.83729 0.88965 1.86606 1.24901 1.84875 1.37328 1.22787 1.01224 0.88291 0.98065 1.60487 1.16352 1.10258 1.43068 1.22378 0.94968 0.93424 0.92159 0.92972 1.22495 0.96450 0.95852 1.00097 1.22982 0.95462 0.98881 1.01545 1.22190 0.95589 0.96849 0.80242 0.89324 1.92819 1.94346 1.90885 1.41627 1.22963 0.98357 0.94682 1.03303 0.97281 0.93208 0.90199 1.00094 0.95536 0.92672 0.95500 0.91147 0.78515 0.94647 0.90582 0.83907 0.91221 0.89678 0.90261 0.90328 0.89234 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.70 9.16 60.06 0.55 1.25 16 2 N -0.52 -10.82 4.62 -244.37 -1.13 -11.95 16 3 C 0.16 3.94 3.79 -4.98 -0.02 3.92 16 4 C -0.51 -14.54 9.07 -34.44 -0.31 -14.85 16 5 H 0.08 2.56 7.35 -52.49 -0.39 2.17 16 6 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 7 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 8 Si 0.88 21.52 27.47 -169.99 -4.67 16.85 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 12 C 0.02 0.33 4.62 -3.82 -0.02 0.31 16 13 C 0.12 1.57 3.02 -26.73 -0.08 1.48 16 14 H 0.09 1.27 6.47 -51.93 -0.34 0.93 16 15 O -0.53 -8.10 13.15 -35.23 -0.46 -8.56 16 16 C 0.03 0.27 5.18 -3.83 -0.02 0.25 16 17 N -0.67 -6.35 6.28 -104.99 -0.66 -7.01 16 18 C 0.08 0.66 3.20 -66.06 -0.21 0.45 16 19 H 0.05 0.45 7.82 -51.93 -0.41 0.04 16 20 C -0.11 -0.84 6.57 -24.74 -0.16 -1.00 16 21 C -0.15 -1.01 6.61 -25.08 -0.17 -1.18 16 22 C 0.09 0.65 4.68 -25.61 -0.12 0.53 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 24 F -0.22 -2.10 17.06 2.25 0.04 -2.06 16 25 C -0.15 -1.13 6.12 -25.61 -0.16 -1.28 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.05 0.83 6.30 -51.93 -0.33 0.51 16 28 H 0.08 1.73 6.86 -51.93 -0.36 1.38 16 29 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 30 H 0.03 0.65 6.99 -51.93 -0.36 0.29 16 31 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 32 H 0.03 0.42 8.12 -51.93 -0.42 -0.01 16 33 H 0.07 1.09 7.93 -51.93 -0.41 0.68 16 34 H 0.37 4.65 9.05 45.56 0.41 5.06 16 35 H 0.04 0.35 8.07 -51.93 -0.42 -0.07 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.34 3.09 8.33 -39.29 -0.33 2.76 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 42 H 0.09 0.62 7.93 -51.93 -0.41 0.20 16 43 H 0.08 0.58 8.02 -51.93 -0.42 0.16 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -31.92 342.85 -8.44 -40.36 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.69 Total: 2.42 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: -0.81 Total: -8.26 kcal Atomic # 7 Polarization: -44.89 SS G_CDS: -1.01 Total: -45.91 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.46 Total: -8.56 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.67 Total: 16.85 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.92 -8.44 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577502735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.975 kcal (2) G-P(sol) polarization free energy of solvation -31.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds