Wall clock time and date at job start Mon Mar 30 2020 01:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46893 * 111.00644 * 2 1 4 4 C 1.50706 * 109.47176 * 66.04281 * 3 2 1 5 5 H 1.07999 * 119.99515 * 0.02562 * 4 3 2 6 6 C 1.37870 * 120.00176 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00200 * 180.02562 * 6 4 3 8 8 Si 1.86802 * 120.00139 * 359.97438 * 6 4 3 9 9 H 1.48499 * 109.47145 * 89.99836 * 8 6 4 10 10 H 1.48496 * 109.47547 * 210.00333 * 8 6 4 11 11 H 1.48499 * 109.47030 * 330.00237 * 8 6 4 12 12 C 1.46902 * 110.99945 * 236.04460 * 2 1 3 13 13 C 1.53004 * 109.47221 * 293.95790 * 12 2 1 14 14 H 1.08999 * 109.47234 * 59.99729 * 13 12 2 15 15 O 1.42905 * 109.46963 * 300.00067 * 13 12 2 16 16 C 1.52998 * 109.47497 * 179.97438 * 13 12 2 17 17 N 1.46897 * 109.47152 * 184.99995 * 16 13 12 18 18 C 1.46898 * 110.99812 * 179.97438 * 17 16 13 19 19 H 1.08999 * 110.43874 * 327.54252 * 18 17 16 20 20 C 1.54887 * 110.48611 * 90.22548 * 18 17 16 21 21 C 1.54887 * 102.75092 * 156.61975 * 20 18 17 22 22 C 1.54262 * 104.19780 * 322.05786 * 21 20 18 23 23 H 1.08990 * 110.03361 * 264.32600 * 22 21 20 24 24 F 1.39906 * 110.07448 * 142.91392 * 22 21 20 25 25 C 1.53878 * 106.59432 * 23.60986 * 22 21 20 26 26 H 1.08997 * 109.47186 * 59.99756 * 1 2 3 27 27 H 1.08993 * 109.47654 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47132 * 300.00059 * 1 2 3 29 29 H 1.09001 * 109.46739 * 306.04690 * 3 2 1 30 30 H 1.09000 * 109.47767 * 186.04949 * 3 2 1 31 31 H 0.96999 * 120.00061 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46970 * 53.95301 * 12 2 1 33 33 H 1.09003 * 109.47253 * 173.96025 * 12 2 1 34 34 H 0.96697 * 113.99620 * 299.99879 * 15 13 12 35 35 H 1.08997 * 109.46713 * 305.00142 * 16 13 12 36 36 H 1.08998 * 109.46884 * 64.99364 * 16 13 12 37 37 H 1.00899 * 111.00375 * 56.04934 * 17 16 13 38 38 H 1.08998 * 110.76053 * 274.93381 * 20 18 17 39 39 H 1.09002 * 110.76070 * 38.30395 * 20 18 17 40 40 H 1.09004 * 110.49078 * 203.37663 * 21 20 18 41 41 H 1.09005 * 110.48777 * 80.74012 * 21 20 18 42 42 H 1.08997 * 110.03053 * 240.71069 * 25 22 21 43 43 H 1.09004 * 110.03403 * 119.28899 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2985 5 1 1.0746 1.5112 2.0487 6 6 2.0269 3.3494 1.5285 7 7 1.7145 3.9389 2.6618 8 14 3.0003 4.2760 0.2310 9 1 2.0638 4.9796 -0.6817 10 1 3.8867 5.2676 0.8914 11 1 3.8242 3.3172 -0.5482 12 6 1.9954 -0.7660 -1.1376 13 6 1.6313 -2.2427 -0.9704 14 1 0.5471 -2.3475 -0.9323 15 8 2.2007 -2.7392 0.2427 16 6 2.1790 -3.0404 -2.1554 17 7 1.7284 -4.4351 -2.0570 18 6 2.2359 -5.2329 -3.1813 19 1 2.3169 -4.6185 -4.0780 20 6 3.6064 -5.8607 -2.8254 21 6 3.6835 -7.0773 -3.7809 22 6 2.2398 -7.6194 -3.8205 23 1 2.1261 -8.4317 -3.1029 24 9 1.9317 -8.0713 -5.1082 25 6 1.3194 -6.4466 -3.4393 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5612 1.9272 -0.8309 30 1 3.0798 1.3443 -0.1083 31 1 1.9892 4.8550 2.8238 32 1 1.5610 -0.3873 -2.0628 33 1 3.0797 -0.6612 -1.1756 34 1 3.1650 -2.6772 0.2787 35 1 1.8141 -2.6055 -3.0859 36 1 3.2685 -3.0087 -2.1423 37 1 0.7223 -4.4871 -2.0023 38 1 4.4164 -5.1597 -3.0266 39 1 3.6243 -6.1850 -1.7849 40 1 4.3633 -7.8315 -3.3843 41 1 4.0001 -6.7621 -4.7752 42 1 0.7590 -6.6899 -2.5366 43 1 0.6332 -6.2290 -4.2578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577502735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:42 Heat of formation + Delta-G solvation = -127.755937 kcal Electronic energy + Delta-G solvation = -21361.027640 eV Core-core repulsion = 17967.963395 eV Total energy + Delta-G solvation = -3393.064244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 274.180 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.60140 -39.80130 -38.80473 -37.07106 -34.75461 -34.59105 -31.30741 -29.86193 -29.37805 -28.07321 -26.63419 -24.63791 -22.61027 -21.82198 -21.63756 -21.11478 -19.02611 -17.79337 -17.46352 -17.01772 -16.88759 -16.66040 -16.07914 -15.97624 -15.79865 -15.45452 -15.15379 -14.87127 -14.55928 -14.48392 -14.19300 -13.89359 -13.43632 -13.19877 -12.92775 -12.73579 -12.58802 -12.52800 -12.39041 -12.24134 -12.11325 -11.83422 -11.77376 -11.66339 -11.57343 -11.50871 -11.44501 -10.79485 -10.62666 -9.34859 -8.96778 -8.27926 -6.31660 1.33925 1.36172 1.46974 2.34310 2.86444 3.04998 3.34283 3.38491 3.51827 3.70599 3.76291 3.93468 4.07087 4.15799 4.27347 4.30055 4.36061 4.41012 4.49779 4.53025 4.57496 4.63794 4.67618 4.74857 4.77664 4.86849 4.89232 5.01035 5.03060 5.12882 5.14506 5.22267 5.25718 5.38999 5.53444 5.97857 6.09348 6.35976 6.42293 6.66989 6.75222 7.07921 7.31929 8.89019 Molecular weight = 274.18amu Principal moments of inertia in cm(-1) A = 0.044132 B = 0.002796 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.301584 B =10011.924368 C =10201.820444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.539 5.539 3 C 0.171 3.829 4 C -0.517 4.517 5 H 0.035 0.965 6 C 0.005 3.995 7 N -0.950 5.950 8 Si 0.951 3.049 9 H -0.269 1.269 10 H -0.281 1.281 11 H -0.247 1.247 12 C 0.021 3.979 13 C 0.127 3.873 14 H 0.088 0.912 15 O -0.555 6.555 16 C 0.039 3.961 17 N -0.676 5.676 18 C 0.082 3.918 19 H 0.050 0.950 20 C -0.108 4.108 21 C -0.146 4.146 22 C 0.082 3.918 23 H 0.104 0.896 24 F -0.230 7.230 25 C -0.151 4.151 26 H 0.019 0.981 27 H 0.076 0.924 28 H 0.043 0.957 29 H -0.015 1.015 30 H 0.031 0.969 31 H 0.267 0.733 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.378 0.622 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.345 0.655 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 -22.039 -16.955 27.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.263 5.263 3 C 0.044 3.956 4 C -0.555 4.555 5 H 0.053 0.947 6 C -0.192 4.192 7 N -0.591 5.591 8 Si 0.774 3.226 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.170 1.170 12 C -0.108 4.108 13 C 0.066 3.934 14 H 0.106 0.894 15 O -0.360 6.360 16 C -0.091 4.091 17 N -0.308 5.308 18 C -0.028 4.028 19 H 0.068 0.932 20 C -0.146 4.146 21 C -0.184 4.184 22 C 0.046 3.954 23 H 0.121 0.879 24 F -0.211 7.211 25 C -0.189 4.189 26 H 0.037 0.963 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.003 0.997 30 H 0.049 0.951 31 H 0.076 0.924 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.226 0.774 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.164 0.836 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.197 -22.423 -15.897 27.671 hybrid contribution -0.160 1.761 -1.669 2.432 sum 3.036 -20.661 -17.565 27.288 Atomic orbital electron populations 1.22189 0.87858 1.00894 0.99702 1.61724 1.07985 1.14347 1.42238 1.19969 0.95280 0.85919 0.94399 1.21283 1.34813 0.97490 1.01922 0.94713 1.25899 0.97053 0.98452 0.97824 1.70060 1.48665 1.13882 1.26444 0.85665 0.79175 0.78679 0.79081 1.19376 1.20686 1.17029 1.22902 1.00827 0.95243 0.91862 1.21761 0.98089 0.89096 0.84411 0.89375 1.86575 1.25977 1.84960 1.38527 1.22581 1.01394 0.88409 0.96749 1.60471 1.16657 1.09809 1.43845 1.22390 0.95413 0.93460 0.91564 0.93155 1.22454 0.96127 0.96132 0.99876 1.22954 0.95343 0.98833 1.01267 1.22378 0.95907 0.97392 0.79740 0.87852 1.92791 1.94485 1.91075 1.42789 1.22917 0.98202 0.94328 1.03430 0.96276 0.90521 0.93801 0.99728 0.95094 0.92436 0.94167 0.90431 0.77388 0.93731 0.90002 0.83646 0.91099 0.90278 0.89041 0.90570 0.88779 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.61 9.16 127.69 1.17 2.78 16 2 N -0.54 -22.03 4.62 -927.06 -4.28 -26.32 16 3 C 0.17 8.20 3.79 85.56 0.32 8.52 16 4 C -0.52 -30.33 9.07 25.60 0.23 -30.09 16 5 H 0.03 2.30 7.35 -2.91 -0.02 2.28 16 6 C 0.00 0.27 5.47 84.65 0.46 0.74 16 7 N -0.95 -60.06 13.96 21.44 0.30 -59.76 16 8 Si 0.95 43.94 27.47 68.60 1.88 45.82 16 9 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 10 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 11 H -0.25 -10.46 6.54 99.48 0.65 -9.81 16 12 C 0.02 0.61 4.62 86.30 0.40 1.01 16 13 C 0.13 3.10 3.02 30.59 0.09 3.19 16 14 H 0.09 2.23 6.47 -2.39 -0.02 2.21 16 15 O -0.56 -16.00 13.15 -148.98 -1.96 -17.96 16 16 C 0.04 0.70 5.18 86.30 0.45 1.15 16 17 N -0.68 -11.29 6.28 -486.07 -3.05 -14.34 16 18 C 0.08 1.15 3.20 45.99 0.15 1.30 16 19 H 0.05 0.75 7.82 -2.39 -0.02 0.73 16 20 C -0.11 -1.40 6.57 31.88 0.21 -1.19 16 21 C -0.15 -1.67 6.61 31.67 0.21 -1.46 16 22 C 0.08 1.05 4.68 31.32 0.15 1.20 16 23 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 24 F -0.23 -4.16 17.06 44.97 0.77 -3.40 16 25 C -0.15 -1.91 6.12 31.32 0.19 -1.72 16 26 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 2.49 6.30 -2.39 -0.02 2.48 16 28 H 0.04 1.97 6.86 -2.39 -0.02 1.96 16 29 H -0.01 -0.70 7.55 -2.39 -0.02 -0.72 16 30 H 0.03 1.45 6.99 -2.39 -0.02 1.44 16 31 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 32 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 33 H 0.08 2.19 7.93 -2.39 -0.02 2.17 16 34 H 0.38 8.95 9.05 -74.06 -0.67 8.28 16 35 H 0.04 0.74 8.07 -2.39 -0.02 0.72 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.34 5.48 8.33 -89.69 -0.75 4.73 16 38 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 0.92 8.12 -2.38 -0.02 0.90 16 42 H 0.09 1.11 7.93 -2.39 -0.02 1.09 16 43 H 0.08 1.00 8.02 -2.39 -0.02 0.98 16 Total: -1.00 -69.68 342.85 -2.79 -72.47 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -0.48 Total: 18.06 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 4.03 Total: -14.58 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -7.03 Total: -100.41 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: -1.96 Total: -17.96 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.77 Total: -3.40 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.82 kcal Total: -69.68 -2.79 -72.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577502735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.288 kcal (2) G-P(sol) polarization free energy of solvation -69.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds