Wall clock time and date at job start Mon Mar 30 2020 01:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99976 * 2 1 4 4 N 1.46900 * 109.46931 * 123.56515 * 3 2 1 5 5 C 1.46895 * 111.00249 * 63.48958 * 4 3 2 6 6 C 1.50701 * 109.47188 * 66.04454 * 5 4 3 7 7 H 1.08006 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00170 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00033 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47423 * 60.00503 * 10 8 6 12 12 H 1.48502 * 109.47272 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47064 * 300.00368 * 10 8 6 14 14 C 1.46905 * 111.00091 * 299.53215 * 4 3 2 15 15 C 1.50697 * 109.47306 * 288.20750 * 14 4 3 16 16 C 1.38307 * 119.96012 * 271.59151 * 15 14 4 17 17 C 1.38262 * 120.14681 * 179.97438 * 16 15 14 18 18 C 1.38126 * 120.07904 * 359.74527 * 17 16 15 19 19 C 1.38893 * 119.92263 * 0.52906 * 18 17 16 20 20 N 1.39666 * 120.07983 * 179.74716 * 19 18 17 21 21 C 1.46504 * 120.00433 * 173.76274 * 20 19 18 22 22 C 1.46507 * 119.99793 * 353.48698 * 20 19 18 23 23 C 1.38085 * 119.96107 * 91.61355 * 15 14 4 24 24 H 1.07995 * 120.00201 * 184.91743 * 1 2 3 25 25 H 1.08004 * 119.99711 * 4.91897 * 1 2 3 26 26 H 1.08005 * 120.00014 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47402 * 3.56396 * 3 2 1 28 28 H 1.09001 * 109.47042 * 243.56111 * 3 2 1 29 29 H 1.09001 * 109.47526 * 186.04105 * 5 4 3 30 30 H 1.08999 * 109.47276 * 306.04909 * 5 4 3 31 31 H 0.96997 * 119.99809 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47032 * 168.20371 * 14 4 3 33 33 H 1.09000 * 109.46650 * 48.20881 * 14 4 3 34 34 H 1.07997 * 119.92485 * 359.97438 * 16 15 14 35 35 H 1.08006 * 119.96193 * 180.02562 * 17 16 15 36 36 H 1.08002 * 120.04438 * 180.27369 * 18 17 16 37 37 H 1.09002 * 109.46877 * 93.75116 * 21 20 19 38 38 H 1.09002 * 109.47020 * 213.75220 * 21 20 19 39 39 H 1.09002 * 109.46842 * 333.75009 * 21 20 19 40 40 H 1.08999 * 109.47154 * 5.08841 * 22 20 19 41 41 H 1.09003 * 109.46905 * 125.08984 * 22 20 19 42 42 H 1.08998 * 109.46936 * 245.09177 * 22 20 19 43 43 H 1.07993 * 120.04251 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9715 1.3462 1.1541 5 6 3.9915 0.2935 1.0592 6 6 4.8928 0.5718 -0.1161 7 1 4.7249 1.4437 -0.7309 8 6 5.9324 -0.2862 -0.4060 9 7 6.1373 -1.3477 0.3428 10 14 7.0500 0.0591 -1.8625 11 1 7.7122 1.3753 -1.6772 12 1 8.0812 -1.0052 -1.9585 13 1 6.2446 0.0814 -3.1100 14 6 2.2250 1.2439 2.4152 15 6 1.4753 2.5279 2.6608 16 6 2.0874 3.5662 3.3391 17 6 1.4034 4.7461 3.5662 18 6 0.1075 4.8935 3.1114 19 6 -0.5122 3.8507 2.4349 20 7 -1.8243 3.9944 1.9782 21 6 -2.4295 2.9500 1.1480 22 6 -2.5975 5.1867 2.3345 23 6 0.1778 2.6662 2.2089 24 1 -0.5400 -0.9318 0.0802 25 1 -0.5400 0.9319 -0.0802 26 1 1.8500 -0.9354 0.0004 27 1 1.3570 2.1325 0.0639 28 1 2.6414 1.3909 -0.9202 29 1 4.5830 0.2771 1.9746 30 1 3.5053 -0.6725 0.9234 31 1 6.8684 -1.9515 0.1386 32 1 2.9203 1.0664 3.2356 33 1 1.5180 0.4166 2.3527 34 1 3.1020 3.4550 3.6922 35 1 1.8845 5.5551 4.0958 36 1 -0.4248 5.8171 3.2852 37 1 -2.9815 2.2562 1.7821 38 1 -3.1106 3.4062 0.4295 39 1 -1.6466 2.4107 0.6147 40 1 -1.9601 5.8840 2.8782 41 1 -2.9674 5.6643 1.4272 42 1 -3.4401 4.8988 2.9631 43 1 -0.2998 1.8548 1.6800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590002954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:59 Heat of formation + Delta-G solvation = 67.581477 kcal Electronic energy + Delta-G solvation = -21332.239681 eV Core-core repulsion = 18378.415127 eV Total energy + Delta-G solvation = -2953.824554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.60011 -37.46142 -35.90018 -32.95271 -32.34342 -31.09331 -29.83871 -28.46735 -26.91502 -26.04179 -24.70862 -23.61405 -21.57407 -21.02868 -19.97410 -18.90523 -16.98392 -16.27242 -15.74482 -15.28704 -15.13906 -14.98425 -14.81556 -14.37414 -13.94710 -13.57887 -13.48301 -13.22860 -12.90870 -12.63708 -12.25602 -12.14564 -11.99309 -11.80142 -11.37375 -11.25120 -10.94940 -10.89050 -10.74637 -10.62371 -10.58286 -10.31104 -9.82942 -9.61575 -9.25992 -8.83716 -8.47436 -8.36969 -7.19066 -7.11469 -6.00663 -4.01525 1.73366 1.92796 2.72235 3.16555 3.35256 3.39138 3.42485 4.15360 4.46037 4.83791 4.95010 5.19490 5.20797 5.23051 5.32027 5.35281 5.38463 5.46544 5.50709 5.55774 5.64073 5.78915 5.80537 5.83530 5.87896 6.07785 6.17796 6.25571 6.31881 6.44336 6.54193 6.67155 6.84809 7.06256 7.09504 7.11305 7.19662 7.32332 7.38073 7.39662 7.66237 7.82643 8.11199 8.22099 8.56661 9.05643 9.62380 11.10045 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.004433 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.749609 B = 6314.922496 C = 6838.548642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.154 4.154 3 C 0.083 3.917 4 N -0.519 5.519 5 C 0.189 3.811 6 C -0.505 4.505 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.278 1.278 14 C 0.084 3.916 15 C -0.013 4.013 16 C -0.154 4.154 17 C -0.078 4.078 18 C -0.208 4.208 19 C 0.205 3.795 20 N -0.643 5.643 21 C 0.094 3.906 22 C 0.093 3.907 23 C -0.192 4.192 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.112 0.888 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.030 0.970 30 H -0.003 1.003 31 H 0.261 0.739 32 H 0.076 0.924 33 H 0.037 0.963 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.459 9.600 4.337 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.174 4.174 3 C -0.045 4.045 4 N -0.241 5.241 5 C 0.065 3.935 6 C -0.544 4.544 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.203 1.203 14 C -0.044 4.044 15 C -0.014 4.014 16 C -0.174 4.174 17 C -0.097 4.097 18 C -0.230 4.230 19 C 0.106 3.894 20 N -0.357 5.357 21 C -0.049 4.049 22 C -0.050 4.050 23 C -0.214 4.214 24 H 0.106 0.894 25 H 0.106 0.894 26 H 0.130 0.870 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.134 0.866 37 H 0.062 0.938 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -16.229 9.912 4.294 19.495 hybrid contribution 0.179 -0.766 -0.823 1.139 sum -16.050 9.146 3.471 18.796 Atomic orbital electron populations 1.23681 0.96016 1.00646 1.05479 1.23948 0.96211 1.01652 0.95559 1.21316 0.94411 0.92374 0.96353 1.62414 1.12354 1.50496 0.98861 1.19800 0.88546 0.87302 0.97881 1.21114 1.12289 1.08956 1.12012 0.91954 1.24959 0.97583 0.95095 0.96852 1.69944 1.31310 1.13642 1.39012 0.86588 0.80311 0.77860 0.82815 1.20164 1.21418 1.20328 1.21088 0.96073 0.92489 0.94708 1.19701 0.92429 0.95739 0.93571 1.20842 1.00070 0.93559 1.02961 1.20820 0.93663 0.97134 0.98048 1.20577 0.96716 0.98405 1.07344 1.17778 0.83983 0.93857 0.93821 1.46189 1.11247 1.21698 1.56556 1.21616 0.98380 0.90841 0.94064 1.21613 0.95678 0.87713 0.99988 1.20733 0.95929 0.97231 1.07515 0.89406 0.89351 0.86986 0.91972 0.89296 0.95243 0.98508 0.92920 0.90597 0.94472 0.86308 0.86615 0.86623 0.93754 0.92101 0.91000 0.90481 0.93077 0.93514 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.28 13.21 29.01 0.38 -2.89 16 2 C -0.15 -2.78 7.43 -36.03 -0.27 -3.05 16 3 C 0.08 1.64 5.37 -4.98 -0.03 1.61 16 4 N -0.52 -11.17 4.65 -238.97 -1.11 -12.28 16 5 C 0.19 4.85 4.55 -4.98 -0.02 4.82 16 6 C -0.51 -14.03 8.47 -34.44 -0.29 -14.32 16 7 H 0.06 1.73 7.12 -52.48 -0.37 1.35 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 14 C 0.08 1.58 4.98 -4.97 -0.02 1.55 16 15 C -0.01 -0.22 5.00 -104.65 -0.52 -0.74 16 16 C -0.15 -2.45 9.70 -39.55 -0.38 -2.83 16 17 C -0.08 -1.08 10.04 -39.61 -0.40 -1.48 16 18 C -0.21 -2.78 9.31 -39.38 -0.37 -3.15 16 19 C 0.21 2.90 6.53 -83.79 -0.55 2.35 16 20 N -0.64 -7.56 3.41 -187.54 -0.64 -8.20 16 21 C 0.09 0.95 10.20 59.85 0.61 1.56 16 22 C 0.09 0.82 10.64 59.85 0.64 1.45 16 23 C -0.19 -2.96 7.33 -39.38 -0.29 -3.25 16 24 H 0.09 1.18 8.06 -52.49 -0.42 0.76 16 25 H 0.09 1.19 5.42 -52.48 -0.28 0.90 16 26 H 0.11 2.26 6.79 -52.48 -0.36 1.90 16 27 H 0.06 1.14 6.05 -51.93 -0.31 0.83 16 28 H 0.09 1.91 6.77 -51.93 -0.35 1.56 16 29 H 0.03 0.81 7.86 -51.93 -0.41 0.40 16 30 H 0.00 -0.08 6.31 -51.93 -0.33 -0.40 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.08 1.42 7.77 -51.93 -0.40 1.02 16 33 H 0.04 0.69 6.67 -51.93 -0.35 0.34 16 34 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 36 H 0.12 1.27 5.75 -52.49 -0.30 0.97 16 37 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.50 8.10 -51.93 -0.42 0.07 16 39 H 0.07 0.78 4.80 -51.93 -0.25 0.53 16 40 H 0.08 0.64 5.32 -51.93 -0.28 0.36 16 41 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.12 1.83 4.08 -52.49 -0.21 1.62 16 LS Contribution 336.15 15.07 5.07 5.07 Total: -1.00 -30.06 336.15 -8.88 -38.93 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.30 Total: 2.51 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -1.61 Total: -16.88 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -1.01 Total: -46.27 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.06 -8.88 -38.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590002954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.513 kcal (2) G-P(sol) polarization free energy of solvation -30.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds