Wall clock time and date at job start Mon Mar 30 2020 01:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50697 * 119.99976 * 2 1 4 4 N 1.46900 * 109.46931 * 123.56515 * 3 2 1 5 5 C 1.46895 * 111.00249 * 63.48958 * 4 3 2 6 6 C 1.50701 * 109.47188 * 66.04454 * 5 4 3 7 7 H 1.08006 * 120.00145 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00170 * 179.97438 * 6 5 4 9 9 N 1.31511 * 119.99955 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00033 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47423 * 60.00503 * 10 8 6 12 12 H 1.48502 * 109.47272 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47064 * 300.00368 * 10 8 6 14 14 C 1.46905 * 111.00091 * 299.53215 * 4 3 2 15 15 C 1.50697 * 109.47306 * 288.20750 * 14 4 3 16 16 C 1.38307 * 119.96012 * 271.59151 * 15 14 4 17 17 C 1.38262 * 120.14681 * 179.97438 * 16 15 14 18 18 C 1.38126 * 120.07904 * 359.74527 * 17 16 15 19 19 C 1.38893 * 119.92263 * 0.52906 * 18 17 16 20 20 N 1.39666 * 120.07983 * 179.74716 * 19 18 17 21 21 C 1.46504 * 120.00433 * 173.76274 * 20 19 18 22 22 C 1.46507 * 119.99793 * 353.48698 * 20 19 18 23 23 C 1.38085 * 119.96107 * 91.61355 * 15 14 4 24 24 H 1.07995 * 120.00201 * 184.91743 * 1 2 3 25 25 H 1.08004 * 119.99711 * 4.91897 * 1 2 3 26 26 H 1.08005 * 120.00014 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47402 * 3.56396 * 3 2 1 28 28 H 1.09001 * 109.47042 * 243.56111 * 3 2 1 29 29 H 1.09001 * 109.47526 * 186.04105 * 5 4 3 30 30 H 1.08999 * 109.47276 * 306.04909 * 5 4 3 31 31 H 0.96997 * 119.99809 * 179.97438 * 9 8 6 32 32 H 1.09000 * 109.47032 * 168.20371 * 14 4 3 33 33 H 1.09000 * 109.46650 * 48.20881 * 14 4 3 34 34 H 1.07997 * 119.92485 * 359.97438 * 16 15 14 35 35 H 1.08006 * 119.96193 * 180.02562 * 17 16 15 36 36 H 1.08002 * 120.04438 * 180.27369 * 18 17 16 37 37 H 1.09002 * 109.46877 * 93.75116 * 21 20 19 38 38 H 1.09002 * 109.47020 * 213.75220 * 21 20 19 39 39 H 1.09002 * 109.46842 * 333.75009 * 21 20 19 40 40 H 1.08999 * 109.47154 * 5.08841 * 22 20 19 41 41 H 1.09003 * 109.46905 * 125.08984 * 22 20 19 42 42 H 1.08998 * 109.46936 * 245.09177 * 22 20 19 43 43 H 1.07993 * 120.04251 * 0.02562 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9715 1.3462 1.1541 5 6 3.9915 0.2935 1.0592 6 6 4.8928 0.5718 -0.1161 7 1 4.7249 1.4437 -0.7309 8 6 5.9324 -0.2862 -0.4060 9 7 6.1373 -1.3477 0.3428 10 14 7.0500 0.0591 -1.8625 11 1 7.7122 1.3753 -1.6772 12 1 8.0812 -1.0052 -1.9585 13 1 6.2446 0.0814 -3.1100 14 6 2.2250 1.2439 2.4152 15 6 1.4753 2.5279 2.6608 16 6 2.0874 3.5662 3.3391 17 6 1.4034 4.7461 3.5662 18 6 0.1075 4.8935 3.1114 19 6 -0.5122 3.8507 2.4349 20 7 -1.8243 3.9944 1.9782 21 6 -2.4295 2.9500 1.1480 22 6 -2.5975 5.1867 2.3345 23 6 0.1778 2.6662 2.2089 24 1 -0.5400 -0.9318 0.0802 25 1 -0.5400 0.9319 -0.0802 26 1 1.8500 -0.9354 0.0004 27 1 1.3570 2.1325 0.0639 28 1 2.6414 1.3909 -0.9202 29 1 4.5830 0.2771 1.9746 30 1 3.5053 -0.6725 0.9234 31 1 6.8684 -1.9515 0.1386 32 1 2.9203 1.0664 3.2356 33 1 1.5180 0.4166 2.3527 34 1 3.1020 3.4550 3.6922 35 1 1.8845 5.5551 4.0958 36 1 -0.4248 5.8171 3.2852 37 1 -2.9815 2.2562 1.7821 38 1 -3.1106 3.4062 0.4295 39 1 -1.6466 2.4107 0.6147 40 1 -1.9601 5.8840 2.8782 41 1 -2.9674 5.6643 1.4272 42 1 -3.4401 4.8988 2.9631 43 1 -0.2998 1.8548 1.6800 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590002954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:58 Heat of formation + Delta-G solvation = 50.129996 kcal Electronic energy + Delta-G solvation = -21332.996434 eV Core-core repulsion = 18378.415127 eV Total energy + Delta-G solvation = -2954.581307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74545 -38.93326 -36.95658 -34.93353 -33.83605 -32.46507 -30.90464 -29.49816 -28.66220 -27.46642 -25.68382 -25.33994 -23.03607 -22.35708 -21.16261 -20.36591 -18.39444 -17.99895 -16.91871 -16.76410 -16.60418 -16.24534 -15.89163 -15.73626 -15.56740 -14.91023 -14.68343 -14.53822 -14.13776 -13.98624 -13.38437 -13.30149 -13.19685 -12.96105 -12.86153 -12.72067 -12.60494 -12.54974 -12.31609 -12.20489 -12.04585 -11.79815 -11.61043 -11.22201 -10.64078 -10.60329 -10.23085 -9.61791 -8.93514 -8.18183 -8.08915 -6.27367 0.58229 0.79640 1.36444 1.40976 1.44027 1.51790 2.32458 2.41498 2.98034 3.14473 3.59638 3.92485 3.97421 4.10131 4.16171 4.25180 4.36664 4.46525 4.53456 4.57099 4.59529 4.64769 4.74389 4.76336 4.82732 4.88902 4.98356 4.99739 5.04472 5.08375 5.20469 5.25006 5.33664 5.44768 5.64310 5.72140 5.72888 5.81449 5.95243 6.03285 6.09630 6.37532 6.44292 6.63936 6.66922 6.87946 7.41574 8.92531 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.004433 C = 0.004093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.749609 B = 6314.922496 C = 6838.548642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.189 4.189 3 C 0.094 3.906 4 N -0.527 5.527 5 C 0.207 3.793 6 C -0.520 4.520 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.965 3.035 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.092 3.908 15 C -0.030 4.030 16 C -0.177 4.177 17 C -0.074 4.074 18 C -0.207 4.207 19 C 0.204 3.796 20 N -0.646 5.646 21 C 0.088 3.912 22 C 0.087 3.913 23 C -0.202 4.202 24 H 0.109 0.891 25 H 0.111 0.889 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.063 0.937 29 H -0.001 1.001 30 H -0.025 1.025 31 H 0.264 0.736 32 H 0.062 0.938 33 H 0.037 0.963 34 H 0.109 0.891 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.837 11.613 3.660 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.209 4.209 3 C -0.034 4.034 4 N -0.250 5.250 5 C 0.081 3.919 6 C -0.558 4.558 7 H 0.078 0.922 8 C -0.194 4.194 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.195 1.195 12 H -0.208 1.208 13 H -0.193 1.193 14 C -0.036 4.036 15 C -0.031 4.031 16 C -0.198 4.198 17 C -0.092 4.092 18 C -0.229 4.229 19 C 0.102 3.898 20 N -0.359 5.359 21 C -0.055 4.055 22 C -0.055 4.055 23 C -0.225 4.225 24 H 0.127 0.873 25 H 0.129 0.871 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.017 0.983 30 H -0.007 1.007 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.127 0.873 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -18.655 11.944 3.611 22.443 hybrid contribution 0.728 -1.340 -0.563 1.626 sum -17.927 10.603 3.048 21.050 Atomic orbital electron populations 1.23944 0.94612 1.02616 1.00108 1.23558 0.97277 0.99530 1.00560 1.21161 0.94017 0.93920 0.94307 1.62303 1.13161 1.48578 1.00915 1.19407 0.89092 0.87621 0.95776 1.21401 1.12915 1.08900 1.12583 0.92241 1.25841 0.99078 0.94746 0.99698 1.70074 1.32030 1.14595 1.40773 0.85498 0.78256 0.77902 0.79344 1.19455 1.20804 1.19333 1.20998 0.95623 0.94178 0.92807 1.19520 0.93239 0.94946 0.95412 1.20902 1.00150 0.94626 1.04123 1.21091 0.93938 0.96762 0.97455 1.20928 0.96502 0.99250 1.06239 1.17925 0.85119 0.93387 0.93358 1.46469 1.10504 1.22839 1.56066 1.21751 0.98372 0.90909 0.94431 1.21823 0.95803 0.86790 1.01090 1.20713 0.95459 0.98197 1.08117 0.87283 0.87129 0.89998 0.90275 0.91906 0.98281 1.00690 0.92758 0.91936 0.94511 0.87285 0.84061 0.83788 0.93032 0.89884 0.92034 0.89972 0.91546 0.92207 0.85680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.91 13.21 67.78 0.90 -4.01 16 2 C -0.19 -6.99 7.43 25.65 0.19 -6.80 16 3 C 0.09 3.78 5.37 85.56 0.46 4.24 16 4 N -0.53 -23.86 4.65 -909.96 -4.23 -28.09 16 5 C 0.21 11.29 4.55 85.56 0.39 11.68 16 6 C -0.52 -30.06 8.47 25.60 0.22 -29.84 16 7 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 8 C 0.00 0.25 5.46 84.66 0.46 0.71 16 9 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 10 Si 0.97 45.11 29.54 68.60 2.03 47.14 16 11 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 14 C 0.09 3.60 4.98 85.56 0.43 4.02 16 15 C -0.03 -1.02 5.00 -19.89 -0.10 -1.12 16 16 C -0.18 -5.68 9.70 22.29 0.22 -5.46 16 17 C -0.07 -1.91 10.04 22.25 0.22 -1.69 16 18 C -0.21 -4.93 9.31 22.40 0.21 -4.72 16 19 C 0.20 5.25 6.53 38.22 0.25 5.50 16 20 N -0.65 -12.99 3.41 -747.24 -2.55 -15.54 16 21 C 0.09 1.47 10.20 127.77 1.30 2.78 16 22 C 0.09 1.17 10.64 127.77 1.36 2.53 16 23 C -0.20 -6.01 7.33 22.40 0.16 -5.85 16 24 H 0.11 2.64 8.06 -2.91 -0.02 2.61 16 25 H 0.11 2.64 5.42 -2.91 -0.02 2.63 16 26 H 0.08 3.52 6.79 -2.91 -0.02 3.50 16 27 H 0.08 2.89 6.05 -2.39 -0.01 2.87 16 28 H 0.06 2.81 6.77 -2.39 -0.02 2.80 16 29 H 0.00 -0.05 7.86 -2.39 -0.02 -0.07 16 30 H -0.02 -1.42 6.31 -2.39 -0.02 -1.44 16 31 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 32 H 0.06 2.54 7.77 -2.39 -0.02 2.52 16 33 H 0.04 1.42 6.67 -2.39 -0.02 1.40 16 34 H 0.11 3.58 8.06 -2.91 -0.02 3.55 16 35 H 0.14 2.84 8.06 -2.91 -0.02 2.82 16 36 H 0.14 2.56 5.75 -2.91 -0.02 2.55 16 37 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 1.02 8.10 -2.39 -0.02 1.00 16 39 H 0.06 1.15 4.80 -2.39 -0.01 1.14 16 40 H 0.08 1.01 5.32 -2.39 -0.01 1.00 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.13 3.53 4.08 -2.91 -0.01 3.52 16 Total: -1.00 -67.12 336.15 3.19 -63.92 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: 0.99 Total: 17.27 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 6.67 Total: -28.02 kcal Atomic # 7 Polarization: -93.81 SS G_CDS: -6.49 Total: -100.31 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.14 kcal Total: -67.12 3.19 -63.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590002954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.053 kcal (2) G-P(sol) polarization free energy of solvation -67.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds