Wall clock time and date at job start Mon Mar 30 2020 01:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00094 * 2 1 4 4 C 1.50693 * 109.47253 * 66.04568 * 3 2 1 5 5 H 1.08011 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00232 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99731 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00121 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46586 * 90.00127 * 8 6 4 10 10 H 1.48491 * 109.47149 * 209.99971 * 8 6 4 11 11 H 1.48503 * 109.47053 * 330.00565 * 8 6 4 12 12 C 1.46900 * 110.99920 * 236.04640 * 2 1 3 13 13 C 1.53001 * 109.47088 * 199.84866 * 12 2 1 14 14 H 1.08997 * 109.47455 * 300.46063 * 13 12 2 15 15 O 1.42904 * 109.46883 * 60.46205 * 13 12 2 16 16 C 1.53006 * 109.47235 * 180.46213 * 13 12 2 17 17 N 1.46898 * 109.47149 * 180.02562 * 16 13 12 18 18 C 1.46899 * 111.00004 * 179.97438 * 17 16 13 19 19 H 1.08998 * 110.01307 * 34.30018 * 18 17 16 20 20 C 1.54260 * 110.03252 * 272.90524 * 18 17 16 21 21 C 1.54968 * 104.16128 * 217.13300 * 20 18 17 22 22 C 1.54891 * 102.77159 * 37.89078 * 21 20 18 23 23 C 1.53872 * 110.03309 * 155.68919 * 18 17 16 24 24 H 1.09006 * 110.02963 * 238.57159 * 23 18 17 25 25 F 1.39901 * 110.03485 * 0.02562 * 23 18 17 26 26 H 1.09000 * 109.47078 * 188.77699 * 1 2 3 27 27 H 1.08998 * 109.47194 * 308.77744 * 1 2 3 28 28 H 1.09001 * 109.47174 * 68.77560 * 1 2 3 29 29 H 1.08996 * 109.46970 * 186.04649 * 3 2 1 30 30 H 1.09003 * 109.46890 * 306.04739 * 3 2 1 31 31 H 0.97001 * 119.99650 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47322 * 79.85195 * 12 2 1 33 33 H 1.09001 * 109.47126 * 319.85088 * 12 2 1 34 34 H 0.96696 * 113.99970 * 60.00518 * 15 13 12 35 35 H 1.08997 * 109.46776 * 300.00265 * 16 13 12 36 36 H 1.09001 * 109.46908 * 59.99775 * 16 13 12 37 37 H 1.00899 * 111.00186 * 56.04718 * 17 16 13 38 38 H 1.08993 * 110.49097 * 335.78485 * 20 18 17 39 39 H 1.09005 * 110.48483 * 98.42660 * 20 18 17 40 40 H 1.08998 * 110.71758 * 279.57687 * 21 20 18 41 41 H 1.08998 * 110.92049 * 156.29723 * 21 20 18 42 42 H 1.09006 * 110.48452 * 203.40258 * 22 21 20 43 43 H 1.08998 * 110.59813 * 80.82058 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0277 3.3491 1.5288 7 7 2.7128 4.0015 0.6153 8 14 1.5827 4.1870 3.1381 9 1 2.6588 3.9499 4.1336 10 1 1.4314 5.6466 2.9109 11 1 0.3042 3.6303 3.6490 12 6 1.9954 -0.7660 -1.1376 13 6 3.4448 -1.1666 -0.8557 14 1 4.0463 -0.2706 -0.7028 15 8 3.4945 -1.9797 0.3185 16 6 3.9968 -1.9545 -2.0454 17 7 5.3883 -2.3397 -1.7745 18 6 5.9523 -3.1002 -2.8976 19 1 5.5447 -2.7323 -3.8392 20 6 5.6326 -4.6004 -2.7335 21 6 6.9051 -5.3180 -3.2505 22 6 8.0456 -4.4027 -2.7400 23 6 7.4858 -2.9745 -2.9021 24 1 7.8226 -2.5464 -3.8463 25 9 7.9041 -2.1723 -1.8349 26 1 -0.3633 -1.0156 0.1568 27 1 -0.3633 0.6436 0.8011 28 1 -0.3633 0.3720 -0.9580 29 1 3.0796 1.3444 -0.1082 30 1 1.5610 1.9274 -0.8309 31 1 2.9881 4.9174 0.7776 32 1 1.9565 -0.1526 -2.0378 33 1 1.3922 -1.6623 -1.2824 34 1 2.9803 -2.7961 0.2536 35 1 3.3953 -2.8506 -2.1983 36 1 3.9589 -1.3343 -2.9410 37 1 5.4580 -2.8615 -0.9137 38 1 5.4586 -4.8409 -1.6848 39 1 4.7673 -4.8743 -3.3373 40 1 6.9057 -5.3651 -4.3395 41 1 6.9900 -6.3166 -2.8220 42 1 8.9406 -4.5331 -3.3484 43 1 8.2640 -4.6103 -1.6924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591767780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:29 Heat of formation + Delta-G solvation = -101.909268 kcal Electronic energy + Delta-G solvation = -21843.070926 eV Core-core repulsion = 18451.127478 eV Total energy + Delta-G solvation = -3391.943449 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 274.180 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.38262 -38.73230 -37.60060 -35.57216 -33.87961 -32.42872 -29.94300 -28.35495 -27.50323 -27.07020 -24.92974 -23.23198 -21.48086 -21.30403 -20.34787 -19.90584 -17.15917 -16.53783 -16.39042 -15.83431 -15.53215 -15.03819 -14.69783 -14.56160 -14.25996 -14.07885 -13.87841 -13.47515 -13.41101 -13.19525 -12.67569 -12.29944 -12.02516 -11.90525 -11.60066 -11.46479 -11.36627 -11.16299 -11.10690 -10.86527 -10.81936 -10.68284 -10.64394 -10.56199 -10.30156 -9.70940 -9.55328 -9.08022 -8.37160 -8.34515 -7.15833 -5.95663 -3.96138 3.38059 3.43538 3.46872 3.88344 4.10642 4.19585 4.48501 4.53392 4.69807 4.80566 4.94702 4.99894 5.05584 5.09945 5.20905 5.29936 5.38849 5.41057 5.47551 5.49492 5.57340 5.62492 5.72084 5.74810 5.82357 5.87743 6.03550 6.07712 6.15965 6.34921 6.59130 6.75615 6.97420 7.34468 7.37255 7.41646 7.86016 8.11254 8.17434 8.26979 8.61679 9.10873 9.67425 11.15490 Molecular weight = 274.18amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.003568 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.912754 B = 7845.215110 C = 8493.809682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.531 5.531 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.111 0.889 15 O -0.539 6.539 16 C 0.031 3.969 17 N -0.668 5.668 18 C 0.056 3.944 19 H 0.089 0.911 20 C -0.154 4.154 21 C -0.120 4.120 22 C -0.153 4.153 23 C 0.097 3.903 24 H 0.082 0.918 25 F -0.195 7.195 26 H 0.043 0.957 27 H 0.077 0.923 28 H 0.007 0.993 29 H 0.032 0.968 30 H -0.012 1.012 31 H 0.261 0.739 32 H 0.032 0.968 33 H 0.057 0.943 34 H 0.357 0.643 35 H 0.028 0.972 36 H 0.077 0.923 37 H 0.353 0.647 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.997 -19.045 -10.571 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.255 5.255 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.103 4.103 13 C 0.056 3.944 14 H 0.129 0.871 15 O -0.342 6.342 16 C -0.098 4.098 17 N -0.299 5.299 18 C -0.056 4.056 19 H 0.107 0.893 20 C -0.193 4.193 21 C -0.158 4.158 22 C -0.191 4.191 23 C 0.060 3.940 24 H 0.100 0.900 25 F -0.175 7.175 26 H 0.061 0.939 27 H 0.096 0.904 28 H 0.025 0.975 29 H 0.050 0.950 30 H 0.006 0.994 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.202 0.798 35 H 0.046 0.954 36 H 0.096 0.904 37 H 0.174 0.826 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.876 -17.944 -10.128 21.722 hybrid contribution -1.274 -0.253 -0.176 1.311 sum 5.602 -18.197 -10.304 21.650 Atomic orbital electron populations 1.22224 0.88973 0.99860 1.00032 1.62028 1.06416 1.17866 1.39164 1.19775 0.95595 0.81439 0.96487 1.21150 1.34658 0.96794 1.01690 0.91906 1.24987 0.95364 0.97384 0.96939 1.69960 1.38478 1.11461 1.34006 0.86499 0.78836 0.78312 0.83758 1.20583 1.21403 1.19930 1.22657 0.95903 0.98034 0.93706 1.21980 0.95182 0.93916 0.83289 0.87100 1.86720 1.73190 1.35743 1.38508 1.22704 0.88326 0.98660 1.00159 1.60194 1.18541 1.46776 1.04413 1.22813 0.94555 0.91865 0.96337 0.89281 1.23160 0.98313 0.95942 1.01903 1.22374 0.94067 0.98574 1.00784 1.23032 0.98790 0.94184 1.03111 1.22196 0.93773 0.89710 0.88358 0.89953 1.92855 1.90992 1.75321 1.58360 0.93853 0.90447 0.97464 0.94967 0.99435 0.92987 0.94947 0.92433 0.79806 0.95409 0.90430 0.82626 0.90937 0.91226 0.91096 0.91002 0.90598 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.75 9.37 60.06 0.56 1.31 16 2 N -0.53 -11.70 4.56 -244.38 -1.11 -12.82 16 3 C 0.19 5.15 4.55 -4.98 -0.02 5.13 16 4 C -0.50 -14.65 8.39 -34.44 -0.29 -14.94 16 5 H 0.06 1.81 7.17 -52.48 -0.38 1.44 16 6 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.46 13.29 55.43 0.74 -26.73 16 8 Si 0.90 22.31 29.54 -169.99 -5.02 17.28 16 9 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.03 0.47 4.66 -3.82 -0.02 0.45 16 13 C 0.12 1.94 3.30 -26.73 -0.09 1.85 16 14 H 0.11 2.30 6.78 -51.93 -0.35 1.95 16 15 O -0.54 -9.11 12.55 -35.23 -0.44 -9.55 16 16 C 0.03 0.40 5.22 -3.82 -0.02 0.38 16 17 N -0.67 -8.61 5.44 -105.55 -0.57 -9.18 16 18 C 0.06 0.56 3.23 -66.60 -0.21 0.34 16 19 H 0.09 0.84 7.82 -51.93 -0.41 0.43 16 20 C -0.15 -1.21 6.43 -25.03 -0.16 -1.37 16 21 C -0.12 -0.79 6.91 -24.69 -0.17 -0.96 16 22 C -0.15 -1.19 6.61 -25.08 -0.17 -1.36 16 23 C 0.10 0.98 4.68 -25.62 -0.12 0.86 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 F -0.19 -2.79 16.19 2.25 0.04 -2.75 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.66 6.67 -51.93 -0.35 1.32 16 28 H 0.01 0.13 8.13 -51.93 -0.42 -0.29 16 29 H 0.03 0.93 6.63 -51.93 -0.34 0.59 16 30 H -0.01 -0.35 8.12 -51.93 -0.42 -0.77 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 32 H 0.03 0.58 8.00 -51.93 -0.42 0.17 16 33 H 0.06 0.86 7.94 -51.93 -0.41 0.44 16 34 H 0.36 4.51 9.05 45.56 0.41 4.92 16 35 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 36 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 37 H 0.35 4.65 7.51 -39.29 -0.29 4.36 16 38 H 0.07 0.61 7.57 -51.93 -0.39 0.22 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -32.68 344.51 -8.70 -41.38 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.71 Total: 3.97 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.80 Total: -6.80 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: -0.95 Total: -48.72 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.44 Total: -9.55 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.68 -8.70 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.531 kcal (2) G-P(sol) polarization free energy of solvation -32.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds