Wall clock time and date at job start Mon Mar 30 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46903 * 111.00094 * 2 1 4 4 C 1.50693 * 109.47253 * 66.04568 * 3 2 1 5 5 H 1.08011 * 120.00090 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00232 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99731 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00121 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46586 * 90.00127 * 8 6 4 10 10 H 1.48491 * 109.47149 * 209.99971 * 8 6 4 11 11 H 1.48503 * 109.47053 * 330.00565 * 8 6 4 12 12 C 1.46900 * 110.99920 * 236.04640 * 2 1 3 13 13 C 1.53001 * 109.47088 * 199.84866 * 12 2 1 14 14 H 1.08997 * 109.47455 * 300.46063 * 13 12 2 15 15 O 1.42904 * 109.46883 * 60.46205 * 13 12 2 16 16 C 1.53006 * 109.47235 * 180.46213 * 13 12 2 17 17 N 1.46898 * 109.47149 * 180.02562 * 16 13 12 18 18 C 1.46899 * 111.00004 * 179.97438 * 17 16 13 19 19 H 1.08998 * 110.01307 * 34.30018 * 18 17 16 20 20 C 1.54260 * 110.03252 * 272.90524 * 18 17 16 21 21 C 1.54968 * 104.16128 * 217.13300 * 20 18 17 22 22 C 1.54891 * 102.77159 * 37.89078 * 21 20 18 23 23 C 1.53872 * 110.03309 * 155.68919 * 18 17 16 24 24 H 1.09006 * 110.02963 * 238.57159 * 23 18 17 25 25 F 1.39901 * 110.03485 * 0.02562 * 23 18 17 26 26 H 1.09000 * 109.47078 * 188.77699 * 1 2 3 27 27 H 1.08998 * 109.47194 * 308.77744 * 1 2 3 28 28 H 1.09001 * 109.47174 * 68.77560 * 1 2 3 29 29 H 1.08996 * 109.46970 * 186.04649 * 3 2 1 30 30 H 1.09003 * 109.46890 * 306.04739 * 3 2 1 31 31 H 0.97001 * 119.99650 * 180.02562 * 7 6 4 32 32 H 1.08999 * 109.47322 * 79.85195 * 12 2 1 33 33 H 1.09001 * 109.47126 * 319.85088 * 12 2 1 34 34 H 0.96696 * 113.99970 * 60.00518 * 15 13 12 35 35 H 1.08997 * 109.46776 * 300.00265 * 16 13 12 36 36 H 1.09001 * 109.46908 * 59.99775 * 16 13 12 37 37 H 1.00899 * 111.00186 * 56.04718 * 17 16 13 38 38 H 1.08993 * 110.49097 * 335.78485 * 20 18 17 39 39 H 1.09005 * 110.48483 * 98.42660 * 20 18 17 40 40 H 1.08998 * 110.71758 * 279.57687 * 21 20 18 41 41 H 1.08998 * 110.92049 * 156.29723 * 21 20 18 42 42 H 1.09006 * 110.48452 * 203.40258 * 22 21 20 43 43 H 1.08998 * 110.59813 * 80.82058 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0277 3.3491 1.5288 7 7 2.7128 4.0015 0.6153 8 14 1.5827 4.1870 3.1381 9 1 2.6588 3.9499 4.1336 10 1 1.4314 5.6466 2.9109 11 1 0.3042 3.6303 3.6490 12 6 1.9954 -0.7660 -1.1376 13 6 3.4448 -1.1666 -0.8557 14 1 4.0463 -0.2706 -0.7028 15 8 3.4945 -1.9797 0.3185 16 6 3.9968 -1.9545 -2.0454 17 7 5.3883 -2.3397 -1.7745 18 6 5.9523 -3.1002 -2.8976 19 1 5.5447 -2.7323 -3.8392 20 6 5.6326 -4.6004 -2.7335 21 6 6.9051 -5.3180 -3.2505 22 6 8.0456 -4.4027 -2.7400 23 6 7.4858 -2.9745 -2.9021 24 1 7.8226 -2.5464 -3.8463 25 9 7.9041 -2.1723 -1.8349 26 1 -0.3633 -1.0156 0.1568 27 1 -0.3633 0.6436 0.8011 28 1 -0.3633 0.3720 -0.9580 29 1 3.0796 1.3444 -0.1082 30 1 1.5610 1.9274 -0.8309 31 1 2.9881 4.9174 0.7776 32 1 1.9565 -0.1526 -2.0378 33 1 1.3922 -1.6623 -1.2824 34 1 2.9803 -2.7961 0.2536 35 1 3.3953 -2.8506 -2.1983 36 1 3.9589 -1.3343 -2.9410 37 1 5.4580 -2.8615 -0.9137 38 1 5.4586 -4.8409 -1.6848 39 1 4.7673 -4.8743 -3.3373 40 1 6.9057 -5.3651 -4.3395 41 1 6.9900 -6.3166 -2.8220 42 1 8.9406 -4.5331 -3.3484 43 1 8.2640 -4.6103 -1.6924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591767780.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:28 Heat of formation + Delta-G solvation = -127.395223 kcal Electronic energy + Delta-G solvation = -21844.176080 eV Core-core repulsion = 18451.127478 eV Total energy + Delta-G solvation = -3393.048603 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 274.180 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.35048 -39.81047 -38.73675 -37.12851 -34.85469 -34.60764 -31.22748 -29.37897 -29.00713 -28.28507 -26.36343 -24.95537 -22.84118 -21.89666 -21.78583 -20.97037 -18.63170 -18.02278 -17.39665 -17.18340 -16.78629 -16.54512 -16.07577 -15.77728 -15.50203 -15.27283 -14.99452 -14.86319 -14.63128 -14.21867 -13.98355 -13.81774 -13.48399 -13.11499 -13.07933 -12.83587 -12.56382 -12.53073 -12.30063 -12.26659 -12.14815 -12.02042 -11.78996 -11.60313 -11.48861 -11.43329 -11.32050 -10.72762 -10.60982 -9.26466 -8.94883 -8.20315 -6.30090 1.39506 1.42632 1.52896 2.40379 2.88879 3.12196 3.38317 3.45586 3.55022 3.71713 3.85877 3.98636 4.03686 4.16297 4.31452 4.35348 4.36558 4.42366 4.48301 4.56224 4.61317 4.67346 4.72147 4.77652 4.80718 4.92778 5.08014 5.09092 5.12443 5.14901 5.20583 5.26218 5.30584 5.38538 5.64623 6.05434 6.09765 6.35155 6.43666 6.65081 6.85986 7.05687 7.39260 8.91071 Molecular weight = 274.18amu Principal moments of inertia in cm(-1) A = 0.026091 B = 0.003568 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.912754 B = 7845.215110 C = 8493.809682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.210 3.790 4 C -0.523 4.523 5 H 0.062 0.938 6 C -0.002 4.002 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.262 1.262 12 C 0.028 3.972 13 C 0.125 3.875 14 H 0.057 0.943 15 O -0.558 6.558 16 C 0.048 3.952 17 N -0.691 5.691 18 C 0.054 3.946 19 H 0.096 0.904 20 C -0.148 4.148 21 C -0.112 4.112 22 C -0.148 4.148 23 C 0.081 3.919 24 H 0.095 0.905 25 F -0.224 7.224 26 H 0.082 0.918 27 H 0.054 0.946 28 H 0.012 0.988 29 H 0.000 1.000 30 H -0.041 1.041 31 H 0.264 0.736 32 H 0.027 0.973 33 H 0.099 0.901 34 H 0.378 0.622 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.349 0.651 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.091 0.909 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 -21.207 -10.909 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.083 3.917 4 C -0.561 4.561 5 H 0.080 0.920 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.186 1.186 12 C -0.101 4.101 13 C 0.065 3.935 14 H 0.075 0.925 15 O -0.364 6.364 16 C -0.082 4.082 17 N -0.322 5.322 18 C -0.057 4.057 19 H 0.114 0.886 20 C -0.187 4.187 21 C -0.150 4.150 22 C -0.186 4.186 23 C 0.044 3.956 24 H 0.113 0.887 25 F -0.205 7.205 26 H 0.101 0.899 27 H 0.073 0.927 28 H 0.031 0.969 29 H 0.018 0.982 30 H -0.024 1.024 31 H 0.073 0.927 32 H 0.045 0.955 33 H 0.117 0.883 34 H 0.226 0.774 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.169 0.831 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.104 0.896 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.004 -20.145 -10.481 23.489 hybrid contribution -0.987 0.370 -0.109 1.060 sum 5.016 -19.775 -10.591 22.987 Atomic orbital electron populations 1.22248 0.87403 1.01781 0.99469 1.61932 1.07939 1.15022 1.41745 1.19362 0.93552 0.84018 0.94725 1.21486 1.34763 0.97449 1.02449 0.92007 1.25954 0.95044 0.98133 1.00794 1.70095 1.39430 1.11912 1.36214 0.85367 0.78973 0.77284 0.78895 1.20109 1.20553 1.18595 1.22774 0.96874 0.98672 0.91794 1.21690 0.94016 0.92924 0.84888 0.92483 1.86665 1.73938 1.36900 1.38858 1.22463 0.88820 0.99150 0.97782 1.60130 1.18683 1.48090 1.05335 1.22908 0.94182 0.93161 0.95425 0.88568 1.23093 0.99505 0.94185 1.01898 1.22376 0.92428 0.98491 1.01718 1.22999 0.99948 0.92802 1.02864 1.22601 0.94288 0.90767 0.87917 0.88659 1.92792 1.91353 1.76409 1.59906 0.89911 0.92740 0.96933 0.98198 1.02372 0.92730 0.95461 0.88323 0.77401 0.92248 0.90532 0.83088 0.91562 0.89900 0.89553 0.89876 0.89073 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.50 9.37 127.69 1.20 2.70 16 2 N -0.54 -24.00 4.56 -927.07 -4.22 -28.22 16 3 C 0.21 11.75 4.55 85.55 0.39 12.14 16 4 C -0.52 -31.16 8.39 25.60 0.21 -30.94 16 5 H 0.06 3.61 7.17 -2.90 -0.02 3.59 16 6 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 7 N -0.94 -58.79 13.29 21.45 0.28 -58.51 16 8 Si 0.97 46.18 29.54 68.60 2.03 48.20 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 12 C 0.03 0.96 4.66 86.30 0.40 1.36 16 13 C 0.13 4.22 3.30 30.60 0.10 4.32 16 14 H 0.06 2.55 6.78 -2.39 -0.02 2.53 16 15 O -0.56 -18.62 12.55 -148.98 -1.87 -20.49 16 16 C 0.05 1.17 5.22 86.31 0.45 1.62 16 17 N -0.69 -17.61 5.44 -487.85 -2.65 -20.26 16 18 C 0.05 1.00 3.23 45.64 0.15 1.15 16 19 H 0.10 1.63 7.82 -2.39 -0.02 1.61 16 20 C -0.15 -1.95 6.43 31.69 0.20 -1.75 16 21 C -0.11 -1.15 6.91 31.91 0.22 -0.93 16 22 C -0.15 -2.07 6.61 31.67 0.21 -1.86 16 23 C 0.08 1.58 4.68 31.31 0.15 1.73 16 24 H 0.10 1.55 8.14 -2.38 -0.02 1.54 16 25 F -0.22 -6.58 16.19 44.97 0.73 -5.85 16 26 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.05 2.32 6.67 -2.39 -0.02 2.31 16 28 H 0.01 0.45 8.13 -2.39 -0.02 0.43 16 29 H 0.00 0.00 6.63 -2.39 -0.02 -0.02 16 30 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 31 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.03 0.97 8.00 -2.39 -0.02 0.95 16 33 H 0.10 2.59 7.94 -2.39 -0.02 2.57 16 34 H 0.38 8.76 9.05 -74.06 -0.67 8.09 16 35 H 0.06 1.10 8.12 -2.39 -0.02 1.08 16 36 H 0.08 1.89 8.07 -2.39 -0.02 1.87 16 37 H 0.35 9.18 7.51 -89.69 -0.67 8.51 16 38 H 0.07 0.98 7.57 -2.39 -0.02 0.96 16 39 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 43 H 0.07 1.14 8.12 -2.39 -0.02 1.12 16 Total: -1.00 -73.68 344.51 -1.91 -75.59 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -0.35 Total: 19.65 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.14 Total: -10.10 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -6.59 Total: -107.00 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -1.87 Total: -20.49 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.73 Total: -5.85 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.20 kcal Total: -73.68 -1.91 -75.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591767780.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.803 kcal (2) G-P(sol) polarization free energy of solvation -73.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds