Wall clock time and date at job start Mon Mar 30 2020 01:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46963 * 110.99757 * 2 1 4 4 C 1.53055 * 109.36293 * 183.18987 * 3 2 1 5 5 N 1.46952 * 109.36377 * 301.59734 * 4 3 2 6 6 C 1.46897 * 111.00104 * 183.18838 * 5 4 3 7 7 C 1.50699 * 109.47126 * 69.03786 * 6 5 4 8 8 H 1.08004 * 119.99793 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00077 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00080 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99967 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47235 * 59.99667 * 11 9 7 13 13 H 1.48494 * 109.47053 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47138 * 300.00126 * 11 9 7 15 15 C 1.46963 * 110.88039 * 59.32297 * 5 4 3 16 16 H 1.08993 * 109.48922 * 60.66852 * 15 5 4 17 17 C 1.52998 * 109.48557 * 180.71129 * 15 5 4 18 18 C 1.50706 * 109.46921 * 182.07326 * 17 15 5 19 19 C 1.38233 * 119.99949 * 83.67282 * 18 17 15 20 20 C 1.38236 * 119.99910 * 179.72906 * 19 18 17 21 21 C 1.38232 * 120.00063 * 0.25383 * 20 19 18 22 22 C 1.38242 * 119.99951 * 0.02562 * 21 20 19 23 23 C 1.38228 * 119.99810 * 359.95454 * 22 21 20 24 24 C 1.46957 * 111.00192 * 123.82091 * 2 1 3 25 25 H 1.09004 * 109.47467 * 63.95478 * 1 2 3 26 26 H 1.09003 * 109.46981 * 183.95414 * 1 2 3 27 27 H 1.09002 * 109.47327 * 303.95551 * 1 2 3 28 28 H 1.09000 * 109.48978 * 63.22287 * 3 2 1 29 29 H 1.08999 * 109.50640 * 303.16792 * 3 2 1 30 30 H 1.08998 * 109.48613 * 181.62961 * 4 3 2 31 31 H 1.08995 * 109.50702 * 61.57553 * 4 3 2 32 32 H 1.08997 * 109.47649 * 189.03581 * 6 5 4 33 33 H 1.09007 * 109.47299 * 309.03811 * 6 5 4 34 34 H 0.97004 * 120.00131 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47268 * 62.07399 * 17 15 5 36 36 H 1.08994 * 109.47324 * 302.07239 * 17 15 5 37 37 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 38 38 H 1.08001 * 120.00114 * 180.27624 * 20 19 18 39 39 H 1.08005 * 120.00012 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.99872 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.99991 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.50813 * 56.85546 * 24 2 1 43 43 H 1.08995 * 109.47019 * 296.78964 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0804 5 7 4.0501 0.5660 1.0597 6 6 5.5190 0.5660 1.0597 7 6 6.0214 1.9513 1.3754 8 1 5.3195 2.7518 1.5573 9 6 7.3770 2.1971 1.4308 10 7 8.2316 1.2225 1.2088 11 14 7.9996 3.9144 1.8214 12 1 7.5050 4.3280 3.1591 13 1 9.4845 3.9144 1.8215 14 1 7.5041 4.8661 0.7946 15 6 3.5235 -0.8060 1.0597 16 1 3.8257 -1.3115 0.1426 17 6 4.0771 -1.5651 2.2672 18 6 3.5775 -2.9867 2.2390 19 6 4.2335 -3.9349 1.4764 20 6 3.7786 -5.2400 1.4550 21 6 2.6645 -5.5959 2.1919 22 6 2.0050 -4.6464 2.9500 23 6 2.4602 -3.3414 2.9717 24 6 1.9957 -0.7636 1.1398 25 1 -0.3634 0.4512 -0.9233 26 1 -0.3633 -1.0253 0.0709 27 1 -0.3634 0.5740 0.8524 28 1 1.6937 1.8774 0.9174 29 1 1.6012 1.9132 -0.8600 30 1 3.9177 2.3449 -0.0513 31 1 3.8256 0.8483 -1.0106 32 1 5.8825 -0.1326 1.8133 33 1 5.8824 0.2627 0.0778 34 1 9.1853 1.3955 1.2474 35 1 3.7434 -1.0809 3.1850 36 1 5.1664 -1.5621 2.2301 37 1 5.1043 -3.6570 0.9012 38 1 4.2937 -5.9818 0.8627 39 1 2.3093 -6.6157 2.1755 40 1 1.1344 -4.9244 3.5254 41 1 1.9452 -2.5997 3.5643 42 1 1.6017 -1.7795 1.1105 43 1 1.6935 -0.2827 2.0700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593088697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:31 Heat of formation + Delta-G solvation = 34.468428 kcal Electronic energy + Delta-G solvation = -21594.249325 eV Core-core repulsion = 18638.988882 eV Total energy + Delta-G solvation = -2955.260443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.58637 -38.41348 -35.25563 -33.41064 -32.29176 -30.75706 -29.90735 -28.68685 -26.32435 -25.93470 -23.55539 -22.49507 -22.25746 -21.30932 -20.41736 -18.94426 -16.64055 -16.36995 -15.58978 -15.21156 -15.16788 -14.59415 -14.47512 -14.31787 -14.08670 -13.53263 -13.26259 -13.17961 -12.75768 -12.52690 -12.29663 -12.18768 -11.95922 -11.76803 -11.19343 -11.17310 -10.94181 -10.88078 -10.81498 -10.64360 -10.50017 -10.27279 -10.10890 -9.56891 -9.19025 -8.77721 -8.48392 -8.36395 -8.07888 -7.22379 -6.01466 -4.02325 1.51490 1.53962 3.33932 3.38180 3.40925 3.92455 4.22917 4.42631 4.77861 5.00809 5.07607 5.18414 5.24816 5.31369 5.33406 5.38156 5.52700 5.59295 5.64782 5.67877 5.76569 5.84098 5.87031 5.92105 5.96285 6.02239 6.08901 6.19502 6.31108 6.40376 6.54721 6.60540 6.63947 6.66845 6.69503 6.92402 7.15788 7.23330 7.29981 7.38095 7.40056 7.82014 8.11492 8.22185 8.56698 9.04708 9.61521 11.09197 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.005465 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.170777 B = 5122.369887 C = 6467.172892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.068 3.932 5 N -0.534 5.534 6 C 0.188 3.812 7 C -0.506 4.506 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.096 3.904 16 H 0.039 0.961 17 C -0.081 4.081 18 C -0.064 4.064 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.134 4.134 22 C -0.122 4.122 23 C -0.119 4.119 24 C 0.067 3.933 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.022 0.978 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.029 0.971 32 H 0.038 0.962 33 H -0.010 1.010 34 H 0.261 0.739 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.072 0.928 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.325 -9.236 0.437 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.271 5.271 3 C -0.071 4.071 4 C -0.060 4.060 5 N -0.259 5.259 6 C 0.064 3.936 7 C -0.545 4.545 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.013 4.013 16 H 0.057 0.943 17 C -0.119 4.119 18 C -0.065 4.065 19 C -0.133 4.133 20 C -0.137 4.137 21 C -0.152 4.152 22 C -0.141 4.141 23 C -0.137 4.137 24 C -0.062 4.062 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.008 0.992 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.137 0.863 42 H 0.090 0.910 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.124 -9.257 0.423 16.066 hybrid contribution 0.436 0.858 0.179 0.979 sum -12.688 -8.399 0.602 15.228 Atomic orbital electron populations 1.22310 0.88145 1.01282 1.00379 1.62139 1.06944 1.14650 1.43375 1.22261 0.96339 0.88441 1.00108 1.21983 0.91815 1.00057 0.92193 1.62282 1.12059 1.10119 1.41457 1.19827 0.79831 0.98052 0.95931 1.21111 0.91207 0.94987 1.47151 0.92054 1.24967 0.96864 0.97105 0.95577 1.69940 1.02154 1.31713 1.50030 0.86586 0.77457 0.84557 0.78947 1.20237 1.21397 1.20316 1.21441 0.92864 0.90829 0.96185 0.94342 1.20804 1.02169 0.89739 0.99193 1.20045 0.94752 0.96015 0.95655 1.21150 1.00216 0.92938 0.98963 1.21116 0.96860 0.96284 0.99453 1.21054 0.96604 0.99157 0.98347 1.21078 0.99927 0.93464 0.99585 1.21082 0.96566 0.96184 0.99867 1.22226 0.95182 0.97423 0.91323 0.91752 0.91913 0.95972 0.94383 0.91230 0.89503 0.95322 0.94376 0.99172 0.92901 0.90451 0.89177 0.85953 0.86410 0.86651 0.86552 0.86298 0.91014 0.94551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.63 60.06 0.58 0.92 16 2 N -0.55 -8.65 4.97 -242.75 -1.21 -9.86 16 3 C 0.06 0.93 5.62 -3.76 -0.02 0.91 16 4 C 0.07 1.35 5.44 -3.77 -0.02 1.33 16 5 N -0.53 -11.47 4.49 -227.93 -1.02 -12.49 16 6 C 0.19 4.81 4.53 -4.98 -0.02 4.79 16 7 C -0.51 -14.01 8.50 -34.44 -0.29 -14.30 16 8 H 0.06 1.69 7.33 -52.48 -0.38 1.30 16 9 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 10 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 11 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.10 1.77 2.05 -67.65 -0.14 1.64 16 16 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 17 C -0.08 -1.40 4.64 -27.88 -0.13 -1.53 16 18 C -0.06 -0.95 4.44 -104.62 -0.46 -1.42 16 19 C -0.11 -1.65 9.73 -39.58 -0.39 -2.04 16 20 C -0.12 -1.48 10.05 -39.58 -0.40 -1.88 16 21 C -0.13 -1.53 10.05 -39.58 -0.40 -1.93 16 22 C -0.12 -1.43 10.05 -39.58 -0.40 -1.82 16 23 C -0.12 -1.56 8.45 -39.59 -0.33 -1.89 16 24 C 0.07 1.07 4.43 -3.77 -0.02 1.05 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.06 0.71 8.07 -51.93 -0.42 0.30 16 27 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.09 1.82 7.00 -51.93 -0.36 1.45 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 1.02 5.57 -51.93 -0.29 0.73 16 33 H -0.01 -0.27 8.09 -51.93 -0.42 -0.69 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.08 1.33 8.04 -51.93 -0.42 0.91 16 36 H 0.09 1.74 5.97 -51.93 -0.31 1.43 16 37 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 40 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 41 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 42 H 0.07 1.09 6.57 -51.93 -0.34 0.74 16 43 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 338.87 15.07 5.11 5.11 Total: -1.00 -29.61 338.87 -11.10 -40.70 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.15 Total: 0.41 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.54 Total: -14.69 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: -1.49 Total: -48.04 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.61 -11.10 -40.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593088697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.172 kcal (2) G-P(sol) polarization free energy of solvation -29.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds