Wall clock time and date at job start Mon Mar 30 2020 01:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46963 * 110.99757 * 2 1 4 4 C 1.53055 * 109.36293 * 183.18987 * 3 2 1 5 5 N 1.46952 * 109.36377 * 301.59734 * 4 3 2 6 6 C 1.46897 * 111.00104 * 183.18838 * 5 4 3 7 7 C 1.50699 * 109.47126 * 69.03786 * 6 5 4 8 8 H 1.08004 * 119.99793 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00077 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00080 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99967 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47235 * 59.99667 * 11 9 7 13 13 H 1.48494 * 109.47053 * 179.97438 * 11 9 7 14 14 H 1.48507 * 109.47138 * 300.00126 * 11 9 7 15 15 C 1.46963 * 110.88039 * 59.32297 * 5 4 3 16 16 H 1.08993 * 109.48922 * 60.66852 * 15 5 4 17 17 C 1.52998 * 109.48557 * 180.71129 * 15 5 4 18 18 C 1.50706 * 109.46921 * 182.07326 * 17 15 5 19 19 C 1.38233 * 119.99949 * 83.67282 * 18 17 15 20 20 C 1.38236 * 119.99910 * 179.72906 * 19 18 17 21 21 C 1.38232 * 120.00063 * 0.25383 * 20 19 18 22 22 C 1.38242 * 119.99951 * 0.02562 * 21 20 19 23 23 C 1.38228 * 119.99810 * 359.95454 * 22 21 20 24 24 C 1.46957 * 111.00192 * 123.82091 * 2 1 3 25 25 H 1.09004 * 109.47467 * 63.95478 * 1 2 3 26 26 H 1.09003 * 109.46981 * 183.95414 * 1 2 3 27 27 H 1.09002 * 109.47327 * 303.95551 * 1 2 3 28 28 H 1.09000 * 109.48978 * 63.22287 * 3 2 1 29 29 H 1.08999 * 109.50640 * 303.16792 * 3 2 1 30 30 H 1.08998 * 109.48613 * 181.62961 * 4 3 2 31 31 H 1.08995 * 109.50702 * 61.57553 * 4 3 2 32 32 H 1.08997 * 109.47649 * 189.03581 * 6 5 4 33 33 H 1.09007 * 109.47299 * 309.03811 * 6 5 4 34 34 H 0.97004 * 120.00131 * 179.97438 * 10 9 7 35 35 H 1.09002 * 109.47268 * 62.07399 * 17 15 5 36 36 H 1.08994 * 109.47324 * 302.07239 * 17 15 5 37 37 H 1.08001 * 119.99890 * 0.02562 * 19 18 17 38 38 H 1.08001 * 120.00114 * 180.27624 * 20 19 18 39 39 H 1.08005 * 120.00012 * 180.02562 * 21 20 19 40 40 H 1.08001 * 119.99872 * 179.97438 * 22 21 20 41 41 H 1.08003 * 119.99991 * 180.02562 * 23 22 21 42 42 H 1.08997 * 109.50813 * 56.85546 * 24 2 1 43 43 H 1.08995 * 109.47019 * 296.78964 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0804 5 7 4.0501 0.5660 1.0597 6 6 5.5190 0.5660 1.0597 7 6 6.0214 1.9513 1.3754 8 1 5.3195 2.7518 1.5573 9 6 7.3770 2.1971 1.4308 10 7 8.2316 1.2225 1.2088 11 14 7.9996 3.9144 1.8214 12 1 7.5050 4.3280 3.1591 13 1 9.4845 3.9144 1.8215 14 1 7.5041 4.8661 0.7946 15 6 3.5235 -0.8060 1.0597 16 1 3.8257 -1.3115 0.1426 17 6 4.0771 -1.5651 2.2672 18 6 3.5775 -2.9867 2.2390 19 6 4.2335 -3.9349 1.4764 20 6 3.7786 -5.2400 1.4550 21 6 2.6645 -5.5959 2.1919 22 6 2.0050 -4.6464 2.9500 23 6 2.4602 -3.3414 2.9717 24 6 1.9957 -0.7636 1.1398 25 1 -0.3634 0.4512 -0.9233 26 1 -0.3633 -1.0253 0.0709 27 1 -0.3634 0.5740 0.8524 28 1 1.6937 1.8774 0.9174 29 1 1.6012 1.9132 -0.8600 30 1 3.9177 2.3449 -0.0513 31 1 3.8256 0.8483 -1.0106 32 1 5.8825 -0.1326 1.8133 33 1 5.8824 0.2627 0.0778 34 1 9.1853 1.3955 1.2474 35 1 3.7434 -1.0809 3.1850 36 1 5.1664 -1.5621 2.2301 37 1 5.1043 -3.6570 0.9012 38 1 4.2937 -5.9818 0.8627 39 1 2.3093 -6.6157 2.1755 40 1 1.1344 -4.9244 3.5254 41 1 1.9452 -2.5997 3.5643 42 1 1.6017 -1.7795 1.1105 43 1 1.6935 -0.2827 2.0700 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593088697.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:30 Heat of formation + Delta-G solvation = 16.007423 kcal Electronic energy + Delta-G solvation = -21595.049855 eV Core-core repulsion = 18638.988882 eV Total energy + Delta-G solvation = -2956.060973 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.88360 -39.63418 -36.76366 -34.99873 -34.14993 -31.74910 -31.17878 -30.34513 -27.73250 -27.54810 -25.09116 -23.85385 -23.36383 -22.94216 -21.64744 -20.47758 -18.52625 -17.64800 -17.13974 -16.54877 -16.39347 -16.29885 -15.75596 -15.59131 -15.34054 -15.15134 -14.79288 -14.23612 -14.06789 -13.98040 -13.91743 -13.56668 -13.17153 -13.07247 -12.87583 -12.78087 -12.49004 -12.39306 -12.24222 -12.06816 -12.02663 -11.77439 -11.67418 -11.29017 -11.16871 -10.57275 -9.77518 -9.52958 -9.32892 -9.05344 -8.19536 -6.29419 0.48849 0.54064 1.40596 1.43794 1.51646 2.40132 2.87838 3.00859 3.12325 3.21734 3.82235 3.95469 4.06902 4.10178 4.15990 4.21545 4.30894 4.34439 4.38321 4.47724 4.53855 4.65166 4.68447 4.69845 4.79985 4.84265 4.92087 4.97820 5.01433 5.06641 5.09129 5.19992 5.20768 5.28149 5.31432 5.61926 5.65098 5.65765 5.80898 6.01151 6.07322 6.12326 6.17108 6.36283 6.61914 6.85677 7.39767 8.91280 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.005465 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.170777 B = 5122.369887 C = 6467.172892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.562 5.562 3 C 0.068 3.932 4 C 0.067 3.933 5 N -0.537 5.537 6 C 0.205 3.795 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.003 3.997 10 N -0.935 5.935 11 Si 0.968 3.032 12 H -0.268 1.268 13 H -0.284 1.284 14 H -0.267 1.267 15 C 0.098 3.902 16 H 0.015 0.985 17 C -0.070 4.070 18 C -0.082 4.082 19 C -0.138 4.138 20 C -0.123 4.123 21 C -0.128 4.128 22 C -0.118 4.118 23 C -0.122 4.122 24 C 0.081 3.919 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.012 0.988 32 H 0.020 0.980 33 H -0.048 1.048 34 H 0.264 0.736 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.103 0.897 38 H 0.137 0.863 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.131 0.869 42 H 0.087 0.913 43 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.057 -9.683 1.135 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.287 5.287 3 C -0.060 4.060 4 C -0.062 4.062 5 N -0.262 5.262 6 C 0.079 3.921 7 C -0.560 4.560 8 H 0.080 0.920 9 C -0.195 4.195 10 N -0.575 5.575 11 Si 0.793 3.207 12 H -0.193 1.193 13 H -0.209 1.209 14 H -0.192 1.192 15 C -0.011 4.011 16 H 0.033 0.967 17 C -0.108 4.108 18 C -0.083 4.083 19 C -0.156 4.156 20 C -0.141 4.141 21 C -0.145 4.145 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.047 4.047 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.030 0.970 32 H 0.038 0.962 33 H -0.030 1.030 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.072 0.928 37 H 0.122 0.878 38 H 0.155 0.845 39 H 0.166 0.834 40 H 0.167 0.833 41 H 0.148 0.852 42 H 0.105 0.895 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -15.890 -9.708 1.117 18.654 hybrid contribution 1.261 0.889 -0.067 1.544 sum -14.629 -8.818 1.050 17.113 Atomic orbital electron populations 1.22389 0.85370 1.02587 1.01553 1.62127 1.09422 1.13946 1.43169 1.22127 0.93189 0.89387 1.01265 1.22001 0.94787 0.98595 0.90788 1.62255 1.09387 1.12309 1.42238 1.19463 0.82651 0.96877 0.93063 1.21410 0.91718 0.95666 1.47218 0.92019 1.25892 0.97010 1.01457 0.95151 1.70083 1.02492 1.34072 1.50861 0.85454 0.76874 0.79270 0.79126 1.19315 1.20893 1.19236 1.21511 0.95081 0.88842 0.95673 0.96743 1.20580 0.99880 0.91863 0.98454 1.19841 0.96394 0.94387 0.97656 1.21165 1.00344 0.94366 0.99722 1.21367 0.97447 0.95473 0.99765 1.21476 0.95479 1.00737 0.96855 1.21462 1.00500 0.92470 0.99108 1.21226 0.95800 0.97541 0.99455 1.22062 0.92594 0.98444 0.91648 0.90226 0.90533 0.95139 0.94321 0.88705 0.91051 0.96993 0.96216 1.03030 0.92736 0.90611 0.92784 0.87843 0.84517 0.83384 0.83308 0.85153 0.89478 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 9.63 127.69 1.23 1.85 16 2 N -0.56 -16.90 4.97 -921.93 -4.58 -21.48 16 3 C 0.07 2.18 5.62 86.31 0.48 2.67 16 4 C 0.07 2.75 5.44 86.31 0.47 3.22 16 5 N -0.54 -24.31 4.49 -875.05 -3.93 -28.24 16 6 C 0.21 11.29 4.53 85.56 0.39 11.68 16 7 C -0.52 -30.09 8.50 25.60 0.22 -29.88 16 8 H 0.06 3.48 7.33 -2.91 -0.02 3.46 16 9 C 0.00 0.16 5.46 84.66 0.46 0.63 16 10 N -0.93 -57.14 13.29 21.45 0.28 -56.86 16 11 Si 0.97 44.80 29.54 68.60 2.03 46.82 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 15 C 0.10 3.80 2.05 44.92 0.09 3.89 16 16 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 17 C -0.07 -2.56 4.64 29.85 0.14 -2.43 16 18 C -0.08 -2.51 4.44 -19.86 -0.09 -2.59 16 19 C -0.14 -4.13 9.73 22.27 0.22 -3.91 16 20 C -0.12 -2.90 10.05 22.27 0.22 -2.67 16 21 C -0.13 -2.51 10.05 22.27 0.22 -2.28 16 22 C -0.12 -2.34 10.05 22.27 0.22 -2.11 16 23 C -0.12 -3.00 8.45 22.27 0.19 -2.81 16 24 C 0.08 2.53 4.43 86.31 0.38 2.91 16 25 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 1.47 8.07 -2.39 -0.02 1.45 16 27 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.07 3.11 7.00 -2.39 -0.02 3.09 16 31 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.02 1.15 5.57 -2.39 -0.01 1.14 16 33 H -0.05 -2.93 8.09 -2.38 -0.02 -2.95 16 34 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.08 2.73 8.04 -2.39 -0.02 2.71 16 36 H 0.05 2.33 5.97 -2.39 -0.01 2.32 16 37 H 0.10 3.36 8.06 -2.91 -0.02 3.33 16 38 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 39 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.15 2.01 8.06 -2.91 -0.02 1.99 16 41 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.09 2.49 6.57 -2.39 -0.02 2.47 16 43 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -66.86 338.87 -0.39 -67.25 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.96 Total: 14.35 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.85 Total: -21.85 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -8.23 Total: -106.58 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -66.86 -0.39 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593088697.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.261 kcal (2) G-P(sol) polarization free energy of solvation -66.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds