Wall clock time and date at job start Mon Mar 30 2020 01:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46954 * 110.99844 * 2 1 4 4 C 1.53055 * 109.36098 * 176.81277 * 3 2 1 5 5 N 1.46955 * 109.36410 * 58.40707 * 4 3 2 6 6 C 1.46902 * 111.00188 * 176.81008 * 5 4 3 7 7 C 1.50706 * 109.47054 * 59.26906 * 6 5 4 8 8 H 1.07997 * 119.99930 * 355.34834 * 7 6 5 9 9 C 1.37879 * 119.99734 * 175.35684 * 7 6 5 10 10 N 1.31508 * 119.99957 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99676 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47380 * 59.99921 * 11 9 7 13 13 H 1.48503 * 109.47159 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47346 * 299.99809 * 11 9 7 15 15 C 1.46954 * 110.87764 * 300.67307 * 5 4 3 16 16 H 1.08996 * 109.49248 * 299.33210 * 15 5 4 17 17 C 1.52999 * 109.49066 * 179.28920 * 15 5 4 18 18 C 1.50702 * 109.47424 * 175.34200 * 17 15 5 19 19 C 1.38233 * 119.99743 * 88.17629 * 18 17 15 20 20 C 1.38239 * 119.99826 * 180.27697 * 19 18 17 21 21 C 1.38237 * 120.00156 * 359.49517 * 20 19 18 22 22 C 1.38233 * 119.99248 * 0.50371 * 21 20 19 23 23 C 1.38233 * 120.00031 * 268.20440 * 18 17 15 24 24 C 1.46957 * 110.99827 * 236.20076 * 2 1 3 25 25 H 1.08989 * 109.47607 * 63.95124 * 1 2 3 26 26 H 1.09002 * 109.47222 * 183.95850 * 1 2 3 27 27 H 1.09000 * 109.47054 * 303.95011 * 1 2 3 28 28 H 1.08998 * 109.48878 * 56.85034 * 3 2 1 29 29 H 1.09001 * 109.49019 * 296.77984 * 3 2 1 30 30 H 1.08992 * 109.49444 * 298.43294 * 4 3 2 31 31 H 1.09004 * 109.50146 * 178.37685 * 4 3 2 32 32 H 1.08996 * 109.47651 * 179.26947 * 6 5 4 33 33 H 1.09006 * 109.47019 * 299.27281 * 6 5 4 34 34 H 0.97008 * 119.99661 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46869 * 55.34212 * 17 15 5 36 36 H 1.08999 * 109.47154 * 295.34434 * 17 15 5 37 37 H 1.07997 * 120.00146 * 0.02562 * 19 18 17 38 38 H 1.08004 * 119.99678 * 179.72806 * 20 19 18 39 39 H 1.07996 * 120.00198 * 180.23444 * 21 20 19 40 40 H 1.08006 * 119.99304 * 179.71915 * 22 21 20 41 41 H 1.08002 * 120.00129 * 359.97438 * 23 18 17 42 42 H 1.08997 * 109.48702 * 63.22162 * 24 2 1 43 43 H 1.08999 * 109.49221 * 303.15438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0500 0.5659 -1.0599 6 6 5.5191 0.5659 -1.0600 7 6 6.0215 -0.0453 0.2227 8 1 5.3226 -0.3294 0.9955 9 6 7.3734 -0.2415 0.4096 10 7 8.2243 0.1042 -0.5315 11 14 7.9961 -0.9984 1.9998 12 1 7.4106 -2.3529 2.1659 13 1 9.4768 -1.1009 1.9526 14 1 7.5961 -0.1424 3.1454 15 6 3.5234 -0.8060 -1.0599 16 1 3.8257 -1.3116 -0.1428 17 6 4.0769 -1.5652 -2.2674 18 6 3.6292 -3.0029 -2.2053 19 6 2.4237 -3.3764 -2.7694 20 6 2.0104 -4.6940 -2.7074 21 6 2.8073 -5.6402 -2.0904 22 6 4.0128 -5.2666 -1.5264 23 6 4.4237 -3.9480 -1.5837 24 6 1.9956 -0.7632 -1.1401 25 1 -0.3634 0.4512 -0.9232 26 1 -0.3634 -1.0252 0.0709 27 1 -0.3633 0.5739 0.8525 28 1 1.6014 1.9128 0.8603 29 1 1.6937 1.8774 -0.9173 30 1 3.8254 0.8479 1.0105 31 1 3.9180 2.3447 0.0514 32 1 5.8824 -0.0165 -1.9066 33 1 5.8824 1.5904 -1.1410 34 1 9.1754 -0.0342 -0.4001 35 1 5.1660 -1.5230 -2.2551 36 1 3.7059 -1.1085 -3.1850 37 1 1.8029 -2.6380 -3.2550 38 1 1.0665 -4.9850 -3.1442 39 1 2.4862 -6.6703 -2.0453 40 1 4.6334 -6.0050 -1.0404 41 1 5.3656 -3.6562 -1.1430 42 1 1.6937 -0.2820 -2.0703 43 1 1.6013 -1.7790 -1.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593088698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:35 Heat of formation + Delta-G solvation = 33.995550 kcal Electronic energy + Delta-G solvation = -22003.599712 eV Core-core repulsion = 19048.318763 eV Total energy + Delta-G solvation = -2955.280949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.49305 -38.33420 -35.28577 -33.25347 -32.25513 -30.62953 -29.78619 -28.60645 -26.19412 -25.77647 -23.52416 -22.48521 -22.16571 -21.35682 -20.29737 -18.88170 -16.55008 -16.18710 -15.47334 -15.21168 -15.06547 -14.54849 -14.48600 -14.26993 -14.01909 -13.59236 -13.11637 -12.95829 -12.67725 -12.37439 -12.26191 -11.99821 -11.89432 -11.65197 -11.24603 -11.03450 -10.87391 -10.81852 -10.68836 -10.48310 -10.38411 -10.09888 -9.96060 -9.84561 -9.38176 -8.63314 -8.42301 -8.29564 -8.01318 -7.15813 -6.01663 -4.10099 1.64683 1.68361 3.29561 3.34542 3.37954 4.05720 4.30200 4.41966 4.90859 5.13582 5.19646 5.28285 5.30809 5.32741 5.40324 5.51429 5.60548 5.64906 5.77710 5.82061 5.88185 5.93099 5.95805 5.98065 6.05622 6.13560 6.22060 6.31628 6.40628 6.55677 6.70842 6.73218 6.79371 6.80146 6.91080 7.12126 7.22725 7.31143 7.38089 7.44309 7.56013 7.92212 8.07718 8.28279 8.32560 9.00275 9.56645 11.03085 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.007815 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.712885 B = 3582.061153 C = 5157.945897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.544 5.544 3 C 0.057 3.943 4 C 0.065 3.935 5 N -0.540 5.540 6 C 0.183 3.817 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.067 3.933 10 N -0.891 5.891 11 Si 0.885 3.115 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.105 3.895 16 H 0.057 0.943 17 C -0.078 4.078 18 C -0.062 4.062 19 C -0.121 4.121 20 C -0.125 4.125 21 C -0.134 4.134 22 C -0.121 4.121 23 C -0.109 4.109 24 C 0.062 3.938 25 H 0.020 0.980 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.033 0.967 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.027 0.973 34 H 0.262 0.738 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.127 0.873 42 H 0.032 0.968 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.849 -5.521 -2.950 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.064 4.064 5 N -0.265 5.265 6 C 0.057 3.943 7 C -0.585 4.585 8 H 0.076 0.924 9 C -0.136 4.136 10 N -0.530 5.530 11 Si 0.713 3.287 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.004 4.004 16 H 0.075 0.925 17 C -0.116 4.116 18 C -0.063 4.063 19 C -0.139 4.139 20 C -0.143 4.143 21 C -0.152 4.152 22 C -0.139 4.139 23 C -0.127 4.127 24 C -0.066 4.066 25 H 0.038 0.962 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.059 0.941 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.145 0.855 42 H 0.050 0.950 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.652 -5.490 -3.000 14.115 hybrid contribution 0.463 -0.458 0.988 1.184 sum -12.189 -5.948 -2.011 13.711 Atomic orbital electron populations 1.22308 0.88302 1.01593 0.99889 1.62104 1.06731 1.14440 1.43554 1.22253 0.96571 0.88583 0.99693 1.21925 0.91426 0.98574 0.94500 1.62670 1.11674 1.11506 1.40626 1.19832 0.80455 0.97360 0.96615 1.21718 0.92208 1.41572 1.03023 0.92424 1.24922 0.96965 0.95410 0.96282 1.69930 1.02513 1.47536 1.33026 0.86768 0.77650 0.79973 0.84333 1.20221 1.21289 1.20300 1.21273 0.91326 0.90544 0.97256 0.92542 1.20743 1.03067 0.89447 0.98346 1.20043 0.94003 0.96135 0.96113 1.21049 0.96325 0.95916 1.00626 1.21038 0.99515 0.93455 1.00322 1.21026 0.95316 0.99035 0.99865 1.21133 0.96600 0.96283 0.99853 1.21259 1.00305 0.92690 0.98485 1.22345 0.95999 0.97421 0.90825 0.96166 0.91871 0.91852 0.91386 0.94882 0.93271 0.91245 0.94128 0.95521 0.92816 0.88723 0.91386 0.86501 0.86730 0.86801 0.86516 0.85491 0.94995 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.60 60.07 0.58 0.93 16 2 N -0.54 -8.92 4.97 -242.76 -1.21 -10.13 16 3 C 0.06 0.94 5.62 -3.77 -0.02 0.92 16 4 C 0.06 1.27 5.24 -3.77 -0.02 1.25 16 5 N -0.54 -11.43 4.73 -227.92 -1.08 -12.51 16 6 C 0.18 4.55 4.81 -4.97 -0.02 4.53 16 7 C -0.55 -14.63 7.67 -34.44 -0.26 -14.89 16 8 H 0.06 1.57 5.81 -52.49 -0.31 1.27 16 9 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 10 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 11 Si 0.88 21.31 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 15 C 0.11 2.05 1.72 -67.66 -0.12 1.93 16 16 H 0.06 1.28 6.95 -51.93 -0.36 0.92 16 17 C -0.08 -1.42 4.68 -27.88 -0.13 -1.55 16 18 C -0.06 -1.02 4.76 -104.62 -0.50 -1.52 16 19 C -0.12 -1.71 7.90 -39.58 -0.31 -2.02 16 20 C -0.13 -1.60 10.05 -39.58 -0.40 -1.99 16 21 C -0.13 -1.72 10.05 -39.58 -0.40 -2.12 16 22 C -0.12 -1.72 10.05 -39.58 -0.40 -2.12 16 23 C -0.11 -1.81 9.69 -39.58 -0.38 -2.20 16 24 C 0.06 1.04 4.31 -3.77 -0.02 1.02 16 25 H 0.02 0.24 8.14 -51.94 -0.42 -0.18 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.74 8.13 -51.93 -0.42 0.31 16 28 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.05 1.08 6.45 -51.93 -0.34 0.75 16 31 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.04 1.07 5.90 -51.93 -0.31 0.76 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 35 H 0.09 1.98 5.94 -51.93 -0.31 1.67 16 36 H 0.07 1.17 8.10 -51.93 -0.42 0.74 16 37 H 0.12 1.48 7.92 -52.49 -0.42 1.07 16 38 H 0.11 1.17 8.06 -52.48 -0.42 0.74 16 39 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.07 1.16 6.28 -51.93 -0.33 0.83 16 LS Contribution 334.46 15.07 5.04 5.04 Total: -1.00 -28.51 334.46 -11.01 -39.52 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -6.99 Total: 2.78 kcal Atomic # 6 Polarization: -13.60 SS G_CDS: -2.50 Total: -16.10 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -1.55 Total: -47.53 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.51 -11.01 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593088698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.516 kcal (2) G-P(sol) polarization free energy of solvation -28.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds