Wall clock time and date at job start Mon Mar 30 2020 01:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46954 * 110.99844 * 2 1 4 4 C 1.53055 * 109.36098 * 176.81277 * 3 2 1 5 5 N 1.46955 * 109.36410 * 58.40707 * 4 3 2 6 6 C 1.46902 * 111.00188 * 176.81008 * 5 4 3 7 7 C 1.50706 * 109.47054 * 59.26906 * 6 5 4 8 8 H 1.07997 * 119.99930 * 355.34834 * 7 6 5 9 9 C 1.37879 * 119.99734 * 175.35684 * 7 6 5 10 10 N 1.31508 * 119.99957 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99676 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47380 * 59.99921 * 11 9 7 13 13 H 1.48503 * 109.47159 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47346 * 299.99809 * 11 9 7 15 15 C 1.46954 * 110.87764 * 300.67307 * 5 4 3 16 16 H 1.08996 * 109.49248 * 299.33210 * 15 5 4 17 17 C 1.52999 * 109.49066 * 179.28920 * 15 5 4 18 18 C 1.50702 * 109.47424 * 175.34200 * 17 15 5 19 19 C 1.38233 * 119.99743 * 88.17629 * 18 17 15 20 20 C 1.38239 * 119.99826 * 180.27697 * 19 18 17 21 21 C 1.38237 * 120.00156 * 359.49517 * 20 19 18 22 22 C 1.38233 * 119.99248 * 0.50371 * 21 20 19 23 23 C 1.38233 * 120.00031 * 268.20440 * 18 17 15 24 24 C 1.46957 * 110.99827 * 236.20076 * 2 1 3 25 25 H 1.08989 * 109.47607 * 63.95124 * 1 2 3 26 26 H 1.09002 * 109.47222 * 183.95850 * 1 2 3 27 27 H 1.09000 * 109.47054 * 303.95011 * 1 2 3 28 28 H 1.08998 * 109.48878 * 56.85034 * 3 2 1 29 29 H 1.09001 * 109.49019 * 296.77984 * 3 2 1 30 30 H 1.08992 * 109.49444 * 298.43294 * 4 3 2 31 31 H 1.09004 * 109.50146 * 178.37685 * 4 3 2 32 32 H 1.08996 * 109.47651 * 179.26947 * 6 5 4 33 33 H 1.09006 * 109.47019 * 299.27281 * 6 5 4 34 34 H 0.97008 * 119.99661 * 180.02562 * 10 9 7 35 35 H 1.09002 * 109.46869 * 55.34212 * 17 15 5 36 36 H 1.08999 * 109.47154 * 295.34434 * 17 15 5 37 37 H 1.07997 * 120.00146 * 0.02562 * 19 18 17 38 38 H 1.08004 * 119.99678 * 179.72806 * 20 19 18 39 39 H 1.07996 * 120.00198 * 180.23444 * 21 20 19 40 40 H 1.08006 * 119.99304 * 179.71915 * 22 21 20 41 41 H 1.08002 * 120.00129 * 359.97438 * 23 18 17 42 42 H 1.08997 * 109.48702 * 63.22162 * 24 2 1 43 43 H 1.08999 * 109.49221 * 303.15438 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5235 1.3290 0.0803 5 7 4.0500 0.5659 -1.0599 6 6 5.5191 0.5659 -1.0600 7 6 6.0215 -0.0453 0.2227 8 1 5.3226 -0.3294 0.9955 9 6 7.3734 -0.2415 0.4096 10 7 8.2243 0.1042 -0.5315 11 14 7.9961 -0.9984 1.9998 12 1 7.4106 -2.3529 2.1659 13 1 9.4768 -1.1009 1.9526 14 1 7.5961 -0.1424 3.1454 15 6 3.5234 -0.8060 -1.0599 16 1 3.8257 -1.3116 -0.1428 17 6 4.0769 -1.5652 -2.2674 18 6 3.6292 -3.0029 -2.2053 19 6 2.4237 -3.3764 -2.7694 20 6 2.0104 -4.6940 -2.7074 21 6 2.8073 -5.6402 -2.0904 22 6 4.0128 -5.2666 -1.5264 23 6 4.4237 -3.9480 -1.5837 24 6 1.9956 -0.7632 -1.1401 25 1 -0.3634 0.4512 -0.9232 26 1 -0.3634 -1.0252 0.0709 27 1 -0.3633 0.5739 0.8525 28 1 1.6014 1.9128 0.8603 29 1 1.6937 1.8774 -0.9173 30 1 3.8254 0.8479 1.0105 31 1 3.9180 2.3447 0.0514 32 1 5.8824 -0.0165 -1.9066 33 1 5.8824 1.5904 -1.1410 34 1 9.1754 -0.0342 -0.4001 35 1 5.1660 -1.5230 -2.2551 36 1 3.7059 -1.1085 -3.1850 37 1 1.8029 -2.6380 -3.2550 38 1 1.0665 -4.9850 -3.1442 39 1 2.4862 -6.6703 -2.0453 40 1 4.6334 -6.0050 -1.0404 41 1 5.3656 -3.6562 -1.1430 42 1 1.6937 -0.2820 -2.0703 43 1 1.6013 -1.7790 -1.1111 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593088698.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:34 Heat of formation + Delta-G solvation = 16.134095 kcal Electronic energy + Delta-G solvation = -22004.374243 eV Core-core repulsion = 19048.318763 eV Total energy + Delta-G solvation = -2956.055480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.86957 -39.61467 -36.81942 -34.84578 -34.12872 -31.74369 -31.11723 -30.22167 -27.57689 -27.50246 -25.11683 -23.95525 -23.34189 -22.89063 -21.58974 -20.54485 -18.33196 -17.60779 -17.09493 -16.61487 -16.35111 -16.31647 -15.70911 -15.62097 -15.30941 -15.17145 -14.71687 -14.20669 -14.00950 -13.94055 -13.63067 -13.44830 -13.23971 -13.03006 -12.96977 -12.70209 -12.54241 -12.24261 -12.10695 -12.02358 -11.93486 -11.83796 -11.71351 -11.49866 -11.11874 -10.57774 -9.75106 -9.49821 -9.27347 -9.01388 -8.15290 -6.32893 0.51781 0.55766 1.33737 1.34207 1.42580 2.35799 2.90151 3.06977 3.09711 3.31763 3.90680 4.02766 4.13466 4.15268 4.22150 4.23497 4.35417 4.43983 4.47364 4.53084 4.61726 4.68668 4.71502 4.73466 4.83991 4.87106 4.97948 5.03052 5.13699 5.15267 5.18761 5.24906 5.27480 5.34672 5.39832 5.63504 5.67356 5.76032 5.86064 6.05762 6.09909 6.15160 6.19866 6.33252 6.53765 6.86802 7.37406 8.86748 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.012026 B = 0.007815 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.712885 B = 3582.061153 C = 5157.945897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.564 5.564 3 C 0.068 3.932 4 C 0.063 3.937 5 N -0.538 5.538 6 C 0.198 3.802 7 C -0.549 4.549 8 H 0.049 0.951 9 C 0.018 3.982 10 N -0.923 5.923 11 Si 0.946 3.054 12 H -0.273 1.273 13 H -0.280 1.280 14 H -0.272 1.272 15 C 0.111 3.889 16 H 0.016 0.984 17 C -0.067 4.067 18 C -0.081 4.081 19 C -0.121 4.121 20 C -0.117 4.117 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.139 4.139 24 C 0.076 3.924 25 H 0.032 0.968 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.041 0.959 30 H 0.020 0.980 31 H 0.066 0.934 32 H 0.021 0.979 33 H 0.000 1.000 34 H 0.264 0.736 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.041 0.959 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.972 -7.014 -2.900 17.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.289 5.289 3 C -0.060 4.060 4 C -0.066 4.066 5 N -0.262 5.262 6 C 0.071 3.929 7 C -0.588 4.588 8 H 0.067 0.933 9 C -0.182 4.182 10 N -0.563 5.563 11 Si 0.772 3.228 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.197 1.197 15 C 0.002 3.998 16 H 0.034 0.966 17 C -0.105 4.105 18 C -0.082 4.082 19 C -0.138 4.138 20 C -0.135 4.135 21 C -0.146 4.146 22 C -0.144 4.144 23 C -0.157 4.157 24 C -0.053 4.053 25 H 0.050 0.950 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.085 0.915 32 H 0.039 0.961 33 H 0.018 0.982 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.170 0.830 39 H 0.166 0.834 40 H 0.149 0.851 41 H 0.113 0.887 42 H 0.059 0.941 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.799 -6.982 -2.944 17.522 hybrid contribution 1.395 -0.029 0.951 1.689 sum -14.404 -7.011 -1.993 16.143 Atomic orbital electron populations 1.22373 0.85483 1.02812 1.01155 1.62080 1.09291 1.14115 1.43439 1.22134 0.93409 0.89281 1.01158 1.21972 0.94469 0.97690 0.92440 1.62637 1.09189 1.13023 1.41318 1.19475 0.83157 0.94976 0.95263 1.21860 0.92309 1.41244 1.03341 0.93334 1.25675 0.97209 0.95894 0.99411 1.70040 1.02776 1.48662 1.34805 0.85788 0.77330 0.79168 0.80534 1.19859 1.20463 1.19696 1.21252 0.93823 0.88830 0.95902 0.96577 1.20535 1.00373 0.91411 0.98225 1.19900 0.95613 0.94621 0.98037 1.21225 0.95220 0.97377 1.00019 1.21472 1.00585 0.92434 0.99023 1.21445 0.94101 1.00840 0.98172 1.21342 0.97779 0.95259 1.00066 1.21178 0.99829 0.94475 1.00205 1.22169 0.93133 0.98430 0.91526 0.94971 0.90776 0.90389 0.89028 0.94052 0.96146 0.91544 0.96065 0.98191 0.92672 0.92910 0.90418 0.84711 0.83036 0.83385 0.85055 0.88680 0.94107 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.60 127.69 1.23 1.87 16 2 N -0.56 -17.42 4.97 -921.95 -4.58 -22.00 16 3 C 0.07 2.14 5.62 86.31 0.49 2.62 16 4 C 0.06 2.55 5.24 86.31 0.45 3.01 16 5 N -0.54 -23.79 4.73 -875.02 -4.14 -27.93 16 6 C 0.20 10.55 4.81 85.56 0.41 10.96 16 7 C -0.55 -31.09 7.67 25.60 0.20 -30.90 16 8 H 0.05 2.80 5.81 -2.91 -0.02 2.78 16 9 C 0.02 1.01 5.46 84.66 0.46 1.47 16 10 N -0.92 -55.38 13.29 21.45 0.28 -55.09 16 11 Si 0.95 45.13 29.54 68.60 2.03 47.16 16 12 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 13 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 14 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 15 C 0.11 4.48 1.72 44.92 0.08 4.55 16 16 H 0.02 0.78 6.95 -2.39 -0.02 0.76 16 17 C -0.07 -2.59 4.68 29.85 0.14 -2.45 16 18 C -0.08 -2.71 4.76 -19.87 -0.09 -2.80 16 19 C -0.12 -3.13 7.90 22.27 0.18 -2.96 16 20 C -0.12 -2.53 10.05 22.27 0.22 -2.30 16 21 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 22 C -0.13 -3.50 10.05 22.27 0.22 -3.27 16 23 C -0.14 -4.81 9.69 22.27 0.22 -4.60 16 24 C 0.08 2.42 4.31 86.31 0.37 2.80 16 25 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.08 1.51 8.13 -2.39 -0.02 1.49 16 28 H 0.09 2.45 8.13 -2.39 -0.02 2.43 16 29 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 30 H 0.02 0.94 6.45 -2.39 -0.02 0.92 16 31 H 0.07 2.66 8.14 -2.39 -0.02 2.65 16 32 H 0.02 1.21 5.90 -2.39 -0.01 1.20 16 33 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 34 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 35 H 0.05 2.43 5.94 -2.39 -0.01 2.42 16 36 H 0.08 2.74 8.10 -2.39 -0.02 2.72 16 37 H 0.14 2.98 7.92 -2.91 -0.02 2.96 16 38 H 0.15 2.20 8.06 -2.91 -0.02 2.17 16 39 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 40 H 0.13 3.12 8.06 -2.91 -0.02 3.09 16 41 H 0.09 3.78 8.06 -2.91 -0.02 3.75 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 2.52 6.28 -2.39 -0.01 2.51 16 Total: -1.00 -65.12 334.46 -0.65 -65.78 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.97 Total: 16.69 kcal Atomic # 6 Polarization: -29.40 SS G_CDS: 4.79 Total: -24.61 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -8.44 Total: -105.02 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -65.12 -0.65 -65.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593088698.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.910 kcal (2) G-P(sol) polarization free energy of solvation -65.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds