Wall clock time and date at job start Mon Mar 30 2020 01:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46900 * 110.99973 * 2 1 4 4 C 1.52991 * 109.47391 * 293.95424 * 3 2 1 5 5 C 1.50696 * 109.47362 * 180.02562 * 4 3 2 6 6 C 1.38241 * 119.99785 * 269.72344 * 5 4 3 7 7 C 1.38233 * 119.99836 * 179.74120 * 6 5 4 8 8 C 1.38238 * 119.99978 * 0.53722 * 7 6 5 9 9 C 1.38236 * 119.99975 * 359.73643 * 8 7 6 10 10 C 1.38230 * 119.99887 * 359.97438 * 9 8 7 11 11 C 1.46899 * 110.99858 * 123.95492 * 2 1 3 12 12 H 1.09003 * 110.88669 * 295.34257 * 11 2 1 13 13 C 1.55157 * 111.00521 * 59.22577 * 11 2 1 14 14 C 1.54329 * 102.94093 * 153.61544 * 13 11 2 15 15 N 1.47019 * 107.26944 * 337.80742 * 14 13 11 16 16 C 1.36946 * 125.64332 * 178.99170 * 15 14 13 17 17 H 1.07999 * 119.99557 * 174.78729 * 16 15 14 18 18 C 1.38806 * 120.00004 * 354.78219 * 16 15 14 19 19 N 1.31612 * 120.00403 * 7.05747 * 18 16 15 20 20 Si 1.86799 * 119.99652 * 187.05539 * 18 16 15 21 21 H 1.48502 * 109.47251 * 94.99360 * 20 18 16 22 22 H 1.48510 * 109.47237 * 214.98587 * 20 18 16 23 23 H 1.48493 * 109.47749 * 334.98967 * 20 18 16 24 24 C 1.47425 * 108.70642 * 358.94058 * 15 14 13 25 25 H 1.09004 * 109.47102 * 296.04616 * 1 2 3 26 26 H 1.09000 * 109.47060 * 56.04447 * 1 2 3 27 27 H 1.09000 * 109.47035 * 176.04576 * 1 2 3 28 28 H 1.09001 * 109.47159 * 53.95771 * 3 2 1 29 29 H 1.08999 * 109.46963 * 173.94779 * 3 2 1 30 30 H 1.09003 * 109.46837 * 299.99963 * 4 3 2 31 31 H 1.09003 * 109.47221 * 59.99406 * 4 3 2 32 32 H 1.08002 * 119.99894 * 0.02562 * 6 5 4 33 33 H 1.07995 * 120.00312 * 180.29786 * 7 6 5 34 34 H 1.08000 * 120.00170 * 179.76907 * 8 7 6 35 35 H 1.08006 * 119.99959 * 180.02562 * 9 8 7 36 36 H 1.08007 * 120.00137 * 179.97438 * 10 9 8 37 37 H 1.09007 * 110.71962 * 271.97522 * 13 11 2 38 38 H 1.08994 * 110.71942 * 35.25071 * 13 11 2 39 39 H 1.08996 * 109.88213 * 97.22626 * 14 13 11 40 40 H 1.09004 * 109.88016 * 218.39356 * 14 13 11 41 41 H 0.97000 * 120.00448 * 180.02562 * 19 18 16 42 42 H 1.09000 * 110.36500 * 265.29340 * 24 15 14 43 43 H 1.08996 * 110.36242 * 142.96959 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1721 3.4641 -1.3184 6 6 1.3967 4.5027 -0.8376 7 6 1.8946 5.7922 -0.8328 8 6 3.1636 6.0449 -1.3192 9 6 3.9369 5.0072 -1.8053 10 6 3.4413 3.7168 -1.8044 11 6 1.9954 -0.7660 1.1376 12 1 1.7277 -0.2924 2.0822 13 6 1.5028 -2.2366 1.0934 14 6 2.6107 -2.9952 1.8543 15 7 3.8238 -2.1664 1.7995 16 6 5.0280 -2.4754 2.3738 17 1 5.8850 -1.8399 2.2061 18 6 5.1470 -3.6051 3.1714 19 7 4.1452 -4.4535 3.2645 20 14 6.7293 -3.9214 4.1126 21 1 6.5973 -3.3935 5.4944 22 1 6.9913 -5.3823 4.1639 23 1 7.8572 -3.2400 3.4281 24 6 3.5295 -0.9482 1.0231 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 1.5612 1.9273 0.8310 29 1 3.0797 1.3444 0.1084 30 1 2.0659 1.5015 -2.1491 31 1 0.5472 2.0844 -1.4265 32 1 0.4036 4.3058 -0.4614 33 1 1.2907 6.6028 -0.4528 34 1 3.5512 7.0530 -1.3190 35 1 4.9286 5.2046 -2.1849 36 1 4.0452 2.9061 -2.1846 37 1 0.5453 -2.3381 1.6044 38 1 1.4313 -2.5886 0.0644 39 1 2.3114 -3.1462 2.8914 40 1 2.7970 -3.9569 1.3762 41 1 4.2282 -5.2428 3.8222 42 1 3.8187 -1.0836 -0.0191 43 1 4.0466 -0.0904 1.4528 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595749132.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:35 Heat of formation + Delta-G solvation = 35.360308 kcal Electronic energy + Delta-G solvation = -20837.426531 eV Core-core repulsion = 17882.204762 eV Total energy + Delta-G solvation = -2955.221768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.37812 -39.70993 -37.31457 -34.56017 -33.45736 -31.72602 -31.09043 -29.41914 -29.21622 -26.53037 -25.94608 -23.42755 -23.38124 -21.94585 -21.47998 -20.91317 -18.88996 -17.70496 -17.31028 -16.61072 -16.36108 -16.21713 -15.81292 -15.52757 -15.28979 -14.78860 -14.27525 -14.13966 -13.97134 -13.80586 -13.74672 -13.63700 -13.42674 -12.99384 -12.77329 -12.75408 -12.40850 -12.17877 -11.99328 -11.97668 -11.85014 -11.74499 -11.57431 -11.52270 -11.42373 -10.69738 -9.78134 -9.57106 -9.27326 -8.91175 -7.87088 -5.22214 0.48119 0.54158 1.45118 1.47411 1.56528 2.47464 2.80172 3.01047 3.32027 3.69078 3.82220 3.95375 4.03907 4.10417 4.20135 4.21614 4.28068 4.33841 4.35195 4.56163 4.63468 4.65380 4.68375 4.70160 4.74572 4.81949 4.94828 4.99535 5.04932 5.11211 5.11860 5.19355 5.23596 5.31922 5.44040 5.61707 5.64241 5.66554 5.73877 5.78507 6.10761 6.15980 6.21196 6.22121 7.08805 7.75656 8.41290 9.24023 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.021964 B = 0.003725 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.533786 B = 7514.933461 C = 8516.353300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.535 5.535 3 C 0.065 3.935 4 C -0.066 4.066 5 C -0.091 4.091 6 C -0.128 4.128 7 C -0.127 4.127 8 C -0.134 4.134 9 C -0.129 4.129 10 C -0.132 4.132 11 C 0.086 3.914 12 H 0.039 0.961 13 C -0.116 4.116 14 C 0.185 3.815 15 N -0.629 5.629 16 C -0.247 4.247 17 H 0.081 0.919 18 C -0.064 4.064 19 N -0.950 5.950 20 Si 0.980 3.020 21 H -0.286 1.286 22 H -0.293 1.293 23 H -0.267 1.267 24 C 0.148 3.852 25 H 0.025 0.975 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.132 0.868 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.136 0.864 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.013 0.987 40 H 0.006 0.994 41 H 0.248 0.752 42 H 0.027 0.973 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.058 19.256 -10.135 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.260 5.260 3 C -0.063 4.063 4 C -0.103 4.103 5 C -0.091 4.091 6 C -0.146 4.146 7 C -0.145 4.145 8 C -0.152 4.152 9 C -0.147 4.147 10 C -0.150 4.150 11 C -0.024 4.024 12 H 0.056 0.944 13 C -0.154 4.154 14 C 0.060 3.940 15 N -0.356 5.356 16 C -0.376 4.376 17 H 0.099 0.901 18 C -0.257 4.257 19 N -0.598 5.598 20 Si 0.807 3.193 21 H -0.213 1.213 22 H -0.219 1.219 23 H -0.192 1.192 24 C 0.023 3.977 25 H 0.044 0.956 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.031 0.969 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -7.814 18.871 -10.452 22.944 hybrid contribution 0.706 -0.302 1.474 1.662 sum -7.108 18.569 -8.978 21.816 Atomic orbital electron populations 1.22501 0.86068 1.02933 1.01111 1.61983 1.09002 1.13308 1.41680 1.22051 0.99841 0.87470 0.96936 1.20509 1.01695 0.90874 0.97241 1.20003 0.94781 0.95574 0.98774 1.21301 1.00475 0.92824 0.99991 1.21454 0.96378 0.97146 0.99550 1.21466 0.94788 0.99984 0.98961 1.21435 1.00653 0.92819 0.99813 1.21312 0.95676 0.97606 1.00416 1.22540 0.94737 0.93900 0.91198 0.94357 1.22731 0.97981 0.93925 1.00760 1.20915 0.84754 0.92057 0.96296 1.44762 1.09046 1.19862 1.61906 1.19460 0.87928 1.07554 1.22617 0.90130 1.25690 1.01462 0.97225 1.01368 1.70198 1.32853 1.13420 1.43352 0.85047 0.78942 0.76685 0.78592 1.21297 1.21919 1.19193 1.21551 0.93571 0.88377 0.94246 0.95629 0.89273 0.91066 0.95044 0.92064 0.90470 0.89620 0.85007 0.84176 0.84220 0.84659 0.85867 0.90318 0.90623 0.96867 0.97604 0.94293 0.95564 0.94850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 9.14 127.69 1.17 1.65 16 2 N -0.54 -15.33 4.66 -888.88 -4.14 -19.47 16 3 C 0.06 1.67 4.83 86.30 0.42 2.09 16 4 C -0.07 -1.35 5.28 29.84 0.16 -1.20 16 5 C -0.09 -1.89 5.13 -19.87 -0.10 -1.99 16 6 C -0.13 -2.38 9.70 22.27 0.22 -2.16 16 7 C -0.13 -2.13 10.05 22.27 0.22 -1.91 16 8 C -0.13 -2.24 10.05 22.27 0.22 -2.01 16 9 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16 10 C -0.13 -2.77 9.70 22.27 0.22 -2.56 16 11 C 0.09 3.11 2.71 46.31 0.13 3.23 16 12 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 13 C -0.12 -4.43 5.23 31.78 0.17 -4.26 16 14 C 0.19 9.58 5.38 86.73 0.47 10.04 16 15 N -0.63 -34.12 3.39 -691.99 -2.35 -36.47 16 16 C -0.25 -14.42 10.27 84.03 0.86 -13.56 16 17 H 0.08 4.51 7.84 -2.91 -0.02 4.49 16 18 C -0.06 -3.77 5.48 84.86 0.46 -3.31 16 19 N -0.95 -58.60 10.36 21.65 0.22 -58.37 16 20 Si 0.98 46.77 29.56 68.60 2.03 48.79 16 21 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 22 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C 0.15 6.48 5.80 86.85 0.50 6.99 16 25 H 0.03 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.09 1.59 6.30 -2.39 -0.02 1.57 16 27 H 0.07 1.61 7.11 -2.39 -0.02 1.59 16 28 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 29 H 0.06 1.79 6.81 -2.39 -0.02 1.77 16 30 H 0.08 1.66 8.09 -2.39 -0.02 1.64 16 31 H 0.09 1.50 6.42 -2.39 -0.02 1.48 16 32 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 33 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 34 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 35 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.12 2.47 8.06 -2.91 -0.02 2.45 16 37 H 0.08 2.65 8.09 -2.38 -0.02 2.63 16 38 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 39 H 0.01 0.75 7.30 -2.39 -0.02 0.74 16 40 H 0.01 0.33 7.61 -2.38 -0.02 0.31 16 41 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.03 1.44 7.79 -2.39 -0.02 1.42 16 Total: -1.00 -68.02 340.71 2.05 -65.98 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: 0.96 Total: 10.66 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 5.33 Total: -11.12 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -6.27 Total: -114.31 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -68.02 2.05 -65.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595749132.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.338 kcal (2) G-P(sol) polarization free energy of solvation -68.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds