Wall clock time and date at job start Mon Mar 30 2020 01:22:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39677 * 120.00335 * 2 1 4 4 C 1.38922 * 120.07042 * 5.55888 * 3 2 1 5 5 C 1.38107 * 119.92160 * 179.76787 * 4 3 2 6 6 C 1.38282 * 120.07335 * 0.51111 * 5 4 3 7 7 C 1.38289 * 120.15324 * 359.74420 * 6 5 4 8 8 C 1.38096 * 120.07340 * 359.97438 * 7 6 5 9 9 C 1.46499 * 120.00092 * 180.02562 * 2 1 3 10 10 H 1.09002 * 110.27620 * 177.45301 * 9 2 1 11 11 C 1.54598 * 110.39384 * 299.59429 * 9 2 1 12 12 C 1.54931 * 102.92262 * 140.91408 * 11 9 2 13 13 N 1.48537 * 103.22974 * 322.58984 * 12 11 9 14 14 C 1.46898 * 110.99912 * 159.71864 * 13 12 11 15 15 C 1.52996 * 109.47022 * 52.60663 * 14 13 12 16 16 C 1.50712 * 109.46806 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99850 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99906 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00061 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99961 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46806 * 90.00320 * 20 18 16 22 22 H 1.48496 * 109.47065 * 209.99823 * 20 18 16 23 23 H 1.48495 * 109.47048 * 330.00478 * 20 18 16 24 24 C 1.47903 * 105.81831 * 39.20596 * 13 12 11 25 25 H 1.09001 * 109.46599 * 269.99805 * 1 2 3 26 26 H 1.09003 * 109.46979 * 29.99696 * 1 2 3 27 27 H 1.08990 * 109.47036 * 150.00047 * 1 2 3 28 28 H 1.07996 * 120.03601 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.95983 * 180.25147 * 5 4 3 30 30 H 1.08002 * 119.92721 * 179.76742 * 6 5 4 31 31 H 1.07999 * 119.96056 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.03904 * 180.02562 * 8 7 6 33 33 H 1.09002 * 110.72652 * 259.27623 * 11 9 2 34 34 H 1.09000 * 110.72227 * 22.37825 * 11 9 2 35 35 H 1.08997 * 110.66894 * 204.15394 * 12 11 9 36 36 H 1.09003 * 110.66470 * 81.02351 * 12 11 9 37 37 H 1.09002 * 109.46906 * 292.60071 * 14 13 12 38 38 H 1.09004 * 109.46812 * 172.60352 * 14 13 12 39 39 H 1.08994 * 109.46980 * 299.99374 * 15 14 13 40 40 H 1.08993 * 109.47492 * 60.00413 * 15 14 13 41 41 H 0.96994 * 120.00272 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.91904 * 94.02543 * 24 13 12 43 43 H 1.08999 * 109.91621 * 215.12429 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 1.4753 2.4108 0.1165 5 6 2.1694 3.6047 0.1209 6 6 3.5468 3.6060 -0.0009 7 6 4.2345 2.4124 -0.1224 8 6 3.5472 1.2146 -0.1218 9 6 2.1975 -1.2687 -0.0006 10 1 3.2710 -1.0851 -0.0459 11 6 1.8471 -2.0936 1.2591 12 6 1.7757 -3.5427 0.7155 13 7 1.1593 -3.3728 -0.6252 14 6 1.4373 -4.5324 -1.4832 15 6 1.0301 -5.8148 -0.7550 16 6 1.3148 -7.0044 -1.6355 17 1 1.7428 -6.8600 -2.6164 18 6 1.0287 -8.2770 -1.1886 19 7 0.5070 -8.4527 0.0058 20 14 1.3808 -9.7513 -2.2802 21 1 2.7597 -10.2393 -2.0233 22 1 0.4089 -10.8331 -1.9796 23 1 1.2539 -9.3537 -3.7052 24 6 1.7539 -2.1415 -1.1892 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 0.3992 2.4106 0.2076 29 1 1.6353 4.5387 0.2155 30 1 4.0869 4.5413 -0.0009 31 1 5.3103 2.4169 -0.2170 32 1 4.0849 0.2827 -0.2162 33 1 2.6312 -2.0018 2.0108 34 1 0.8851 -1.7841 1.6676 35 1 1.1450 -4.1621 1.3531 36 1 2.7744 -3.9705 0.6283 37 1 2.5023 -4.5673 -1.7129 38 1 0.8686 -4.4440 -2.4089 39 1 1.5988 -5.9032 0.1707 40 1 -0.0347 -5.7798 -0.5253 41 1 0.3054 -9.3479 0.3200 42 1 2.6160 -2.3944 -1.8064 43 1 1.0124 -1.6111 -1.7867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595825686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:42 Heat of formation + Delta-G solvation = 40.451276 kcal Electronic energy + Delta-G solvation = -20804.533224 eV Core-core repulsion = 17849.532217 eV Total energy + Delta-G solvation = -2955.001008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.99768 -38.51274 -35.80154 -33.36973 -31.69002 -31.02378 -29.67252 -28.91967 -28.08648 -25.78588 -24.22158 -22.55057 -21.88601 -21.55689 -19.77648 -19.55512 -17.95427 -16.49066 -16.05151 -15.63710 -15.19462 -14.71672 -14.50505 -14.40702 -14.14910 -13.91676 -13.67021 -13.48923 -12.71969 -12.44571 -12.24161 -12.16413 -11.95463 -11.86718 -11.65850 -11.47944 -11.12665 -10.99517 -10.92547 -10.82195 -10.54037 -10.44961 -9.95753 -9.85028 -9.37030 -9.16048 -8.98904 -8.37848 -7.88047 -7.29386 -6.02669 -4.05225 1.37927 1.56580 3.06138 3.30050 3.36478 3.39833 3.84191 4.37310 4.49978 4.74306 4.81000 4.85632 4.90786 5.04481 5.19786 5.27514 5.33379 5.40012 5.40849 5.52200 5.53369 5.63202 5.67109 5.79629 5.87634 5.95171 5.98891 6.05429 6.17048 6.24495 6.29741 6.37610 6.44286 6.46769 6.57678 6.82959 6.88743 7.25384 7.39238 7.41955 7.52927 7.69630 7.83233 8.02178 8.39720 9.01627 9.58718 11.08716 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.046085 B = 0.003022 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.429656 B = 9263.286478 C = 9429.203297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.618 5.618 3 C 0.223 3.777 4 C -0.201 4.201 5 C -0.073 4.073 6 C -0.188 4.188 7 C -0.072 4.072 8 C -0.203 4.203 9 C 0.139 3.861 10 H 0.093 0.907 11 C -0.135 4.135 12 C 0.042 3.958 13 N -0.516 5.516 14 C 0.054 3.946 15 C 0.025 3.975 16 C -0.523 4.523 17 H 0.054 0.946 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.023 3.977 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.121 0.879 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.045 0.955 37 H 0.022 0.978 38 H 0.062 0.938 39 H 0.018 0.982 40 H 0.024 0.976 41 H 0.261 0.739 42 H 0.045 0.955 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.861 21.858 1.735 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.327 5.327 3 C 0.120 3.880 4 C -0.224 4.224 5 C -0.092 4.092 6 C -0.209 4.209 7 C -0.091 4.091 8 C -0.225 4.225 9 C 0.035 3.965 10 H 0.111 0.889 11 C -0.174 4.174 12 C -0.086 4.086 13 N -0.240 5.240 14 C -0.074 4.074 15 C -0.012 4.012 16 C -0.561 4.561 17 H 0.072 0.928 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.107 4.107 25 H 0.065 0.935 26 H 0.081 0.919 27 H 0.100 0.900 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.064 0.936 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.103 21.572 1.869 21.874 hybrid contribution 1.054 -1.052 -0.672 1.634 sum 4.157 20.520 1.197 20.972 Atomic orbital electron populations 1.21629 0.79396 1.03012 1.01211 1.46595 1.04992 1.02267 1.78858 1.17916 0.91284 0.85885 0.92920 1.20682 0.99710 0.91217 1.10779 1.20860 0.94228 0.97062 0.97035 1.20851 0.94406 0.97712 1.07890 1.20869 0.99282 0.92039 0.96890 1.20747 0.92538 0.98650 1.10561 1.21989 0.96280 0.82918 0.95328 0.88943 1.22935 1.02335 0.95405 0.96767 1.23132 0.98530 0.95213 0.91701 1.64890 1.53490 1.02747 1.02903 1.22519 0.97661 0.90860 0.96320 1.19144 0.97466 0.89177 0.95463 1.21185 1.41791 0.91290 1.01874 0.92787 1.24992 0.95166 0.99021 0.95121 1.69961 1.43430 1.22122 1.17742 0.86589 0.78027 0.82435 0.80927 1.20694 1.21165 1.19874 1.23276 0.98510 0.92618 0.96284 0.93538 0.91862 0.90033 0.86169 0.86520 0.86816 0.86463 0.86112 0.91202 0.90397 0.89349 0.93643 0.95979 0.91922 0.96367 0.95765 0.92965 0.93636 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.97 8.83 59.85 0.53 1.50 16 2 N -0.62 -7.41 2.93 -170.44 -0.50 -7.91 16 3 C 0.22 2.67 6.54 -83.78 -0.55 2.12 16 4 C -0.20 -2.19 9.16 -39.38 -0.36 -2.55 16 5 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 6 C -0.19 -1.85 10.04 -39.55 -0.40 -2.24 16 7 C -0.07 -0.74 10.04 -39.61 -0.40 -1.14 16 8 C -0.20 -2.33 9.31 -39.38 -0.37 -2.69 16 9 C 0.14 1.78 3.33 -66.57 -0.22 1.55 16 10 H 0.09 1.11 5.39 -51.93 -0.28 0.83 16 11 C -0.14 -1.79 6.66 -24.87 -0.17 -1.96 16 12 C 0.04 0.70 5.10 -1.90 -0.01 0.69 16 13 N -0.52 -9.14 5.40 -230.45 -1.24 -10.39 16 14 C 0.05 1.12 4.97 -3.83 -0.02 1.10 16 15 C 0.02 0.64 4.63 -27.88 -0.13 0.51 16 16 C -0.52 -14.76 9.11 -34.43 -0.31 -15.07 16 17 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 20 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.02 0.33 5.83 -2.75 -0.02 0.31 16 25 H 0.05 0.48 7.91 -51.93 -0.41 0.07 16 26 H 0.06 0.59 6.45 -51.93 -0.33 0.26 16 27 H 0.08 0.97 6.63 -51.93 -0.34 0.63 16 28 H 0.12 1.15 6.30 -52.49 -0.33 0.82 16 29 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 30 H 0.11 0.89 8.06 -52.49 -0.42 0.47 16 31 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.12 1.31 5.77 -52.48 -0.30 1.01 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.04 7.07 -51.93 -0.37 0.67 16 35 H 0.09 1.60 7.66 -51.93 -0.40 1.20 16 36 H 0.05 0.78 8.00 -51.93 -0.42 0.36 16 37 H 0.02 0.46 7.81 -51.93 -0.41 0.05 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.02 0.49 6.79 -51.93 -0.35 0.13 16 40 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.05 0.67 7.57 -51.93 -0.39 0.28 16 43 H 0.08 1.15 6.80 -51.93 -0.35 0.80 16 LS Contribution 336.33 15.07 5.07 5.07 Total: -1.00 -30.01 336.33 -10.64 -40.65 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.77 Total: -0.61 kcal Atomic # 6 Polarization: -14.49 SS G_CDS: -2.91 Total: -17.40 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: -1.01 Total: -44.29 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.01 -10.64 -40.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595825686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.102 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds