Wall clock time and date at job start Mon Mar 30 2020 01:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.39677 * 120.00335 * 2 1 4 4 C 1.38922 * 120.07042 * 5.55888 * 3 2 1 5 5 C 1.38107 * 119.92160 * 179.76787 * 4 3 2 6 6 C 1.38282 * 120.07335 * 0.51111 * 5 4 3 7 7 C 1.38289 * 120.15324 * 359.74420 * 6 5 4 8 8 C 1.38096 * 120.07340 * 359.97438 * 7 6 5 9 9 C 1.46499 * 120.00092 * 180.02562 * 2 1 3 10 10 H 1.09002 * 110.27620 * 177.45301 * 9 2 1 11 11 C 1.54598 * 110.39384 * 299.59429 * 9 2 1 12 12 C 1.54931 * 102.92262 * 140.91408 * 11 9 2 13 13 N 1.48537 * 103.22974 * 322.58984 * 12 11 9 14 14 C 1.46898 * 110.99912 * 159.71864 * 13 12 11 15 15 C 1.52996 * 109.47022 * 52.60663 * 14 13 12 16 16 C 1.50712 * 109.46806 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99850 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99906 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00061 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99961 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46806 * 90.00320 * 20 18 16 22 22 H 1.48496 * 109.47065 * 209.99823 * 20 18 16 23 23 H 1.48495 * 109.47048 * 330.00478 * 20 18 16 24 24 C 1.47903 * 105.81831 * 39.20596 * 13 12 11 25 25 H 1.09001 * 109.46599 * 269.99805 * 1 2 3 26 26 H 1.09003 * 109.46979 * 29.99696 * 1 2 3 27 27 H 1.08990 * 109.47036 * 150.00047 * 1 2 3 28 28 H 1.07996 * 120.03601 * 0.02562 * 4 3 2 29 29 H 1.07999 * 119.95983 * 180.25147 * 5 4 3 30 30 H 1.08002 * 119.92721 * 179.76742 * 6 5 4 31 31 H 1.07999 * 119.96056 * 180.02562 * 7 6 5 32 32 H 1.08003 * 120.03904 * 180.02562 * 8 7 6 33 33 H 1.09002 * 110.72652 * 259.27623 * 11 9 2 34 34 H 1.09000 * 110.72227 * 22.37825 * 11 9 2 35 35 H 1.08997 * 110.66894 * 204.15394 * 12 11 9 36 36 H 1.09003 * 110.66470 * 81.02351 * 12 11 9 37 37 H 1.09002 * 109.46906 * 292.60071 * 14 13 12 38 38 H 1.09004 * 109.46812 * 172.60352 * 14 13 12 39 39 H 1.08994 * 109.46980 * 299.99374 * 15 14 13 40 40 H 1.08993 * 109.47492 * 60.00413 * 15 14 13 41 41 H 0.96994 * 120.00272 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.91904 * 94.02543 * 24 13 12 43 43 H 1.08999 * 109.91621 * 215.12429 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2096 0.0000 4 6 1.4753 2.4108 0.1165 5 6 2.1694 3.6047 0.1209 6 6 3.5468 3.6060 -0.0009 7 6 4.2345 2.4124 -0.1224 8 6 3.5472 1.2146 -0.1218 9 6 2.1975 -1.2687 -0.0006 10 1 3.2710 -1.0851 -0.0459 11 6 1.8471 -2.0936 1.2591 12 6 1.7757 -3.5427 0.7155 13 7 1.1593 -3.3728 -0.6252 14 6 1.4373 -4.5324 -1.4832 15 6 1.0301 -5.8148 -0.7550 16 6 1.3148 -7.0044 -1.6355 17 1 1.7428 -6.8600 -2.6164 18 6 1.0287 -8.2770 -1.1886 19 7 0.5070 -8.4527 0.0058 20 14 1.3808 -9.7513 -2.2802 21 1 2.7597 -10.2393 -2.0233 22 1 0.4089 -10.8331 -1.9796 23 1 1.2539 -9.3537 -3.7052 24 6 1.7539 -2.1415 -1.1892 25 1 -0.3632 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8899 -0.5138 28 1 0.3992 2.4106 0.2076 29 1 1.6353 4.5387 0.2155 30 1 4.0869 4.5413 -0.0009 31 1 5.3103 2.4169 -0.2170 32 1 4.0849 0.2827 -0.2162 33 1 2.6312 -2.0018 2.0108 34 1 0.8851 -1.7841 1.6676 35 1 1.1450 -4.1621 1.3531 36 1 2.7744 -3.9705 0.6283 37 1 2.5023 -4.5673 -1.7129 38 1 0.8686 -4.4440 -2.4089 39 1 1.5988 -5.9032 0.1707 40 1 -0.0347 -5.7798 -0.5253 41 1 0.3054 -9.3479 0.3200 42 1 2.6160 -2.3944 -1.8064 43 1 1.0124 -1.6111 -1.7867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595825686.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:41 Heat of formation + Delta-G solvation = 23.517723 kcal Electronic energy + Delta-G solvation = -20805.267518 eV Core-core repulsion = 17849.532217 eV Total energy + Delta-G solvation = -2955.735301 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98062 -39.60178 -36.92211 -35.28814 -33.23491 -31.87509 -30.61199 -30.46919 -29.30412 -26.98971 -25.87253 -23.54595 -23.39996 -22.42976 -21.34598 -20.61002 -18.82714 -18.57134 -17.14296 -16.72415 -16.46797 -16.24211 -15.87343 -15.48812 -15.28186 -15.09329 -14.69057 -14.43188 -14.23262 -13.80658 -13.72134 -13.40403 -13.27764 -12.88865 -12.86854 -12.73688 -12.67243 -12.41704 -12.37301 -12.13472 -11.90424 -11.83483 -11.45229 -11.35948 -11.25316 -10.67604 -10.57244 -9.76263 -9.34434 -8.22195 -8.16104 -6.33480 0.60354 0.77105 1.39063 1.40426 1.51638 2.15268 2.38957 3.04756 3.11401 3.11870 3.62072 3.71721 3.87184 4.07873 4.23899 4.26906 4.33029 4.35239 4.44666 4.47989 4.54964 4.63951 4.68999 4.71217 4.73841 4.82651 4.86420 4.96717 4.98801 5.03449 5.05162 5.13933 5.22669 5.42707 5.44419 5.60943 5.68309 5.76395 5.81433 5.96228 6.06153 6.11529 6.28364 6.36532 6.65958 6.83153 7.35744 8.89936 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.046085 B = 0.003022 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.429656 B = 9263.286478 C = 9429.203297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.622 5.622 3 C 0.203 3.797 4 C -0.210 4.210 5 C -0.078 4.078 6 C -0.192 4.192 7 C -0.079 4.079 8 C -0.218 4.218 9 C 0.149 3.851 10 H 0.105 0.895 11 C -0.122 4.122 12 C 0.042 3.958 13 N -0.525 5.525 14 C 0.070 3.930 15 C 0.035 3.965 16 C -0.546 4.546 17 H 0.059 0.941 18 C 0.002 3.998 19 N -0.931 5.931 20 Si 0.966 3.034 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.264 1.264 24 C 0.026 3.974 25 H 0.050 0.950 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.129 0.871 29 H 0.139 0.861 30 H 0.135 0.865 31 H 0.136 0.864 32 H 0.122 0.878 33 H 0.087 0.913 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.038 0.962 37 H 0.024 0.976 38 H 0.061 0.939 39 H -0.001 1.001 40 H -0.009 1.009 41 H 0.264 0.736 42 H 0.047 0.953 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.823 23.425 1.045 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.332 5.332 3 C 0.102 3.898 4 C -0.232 4.232 5 C -0.097 4.097 6 C -0.212 4.212 7 C -0.098 4.098 8 C -0.240 4.240 9 C 0.044 3.956 10 H 0.122 0.878 11 C -0.161 4.161 12 C -0.087 4.087 13 N -0.249 5.249 14 C -0.058 4.058 15 C -0.003 4.003 16 C -0.584 4.584 17 H 0.077 0.923 18 C -0.196 4.196 19 N -0.571 5.571 20 Si 0.790 3.210 21 H -0.197 1.197 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.103 4.103 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.153 0.847 31 H 0.153 0.847 32 H 0.140 0.860 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.043 0.957 38 H 0.079 0.921 39 H 0.017 0.983 40 H 0.010 0.990 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.071 23.176 1.176 23.560 hybrid contribution 0.753 -1.442 -0.425 1.681 sum 4.823 21.735 0.752 22.276 Atomic orbital electron populations 1.21632 0.78957 1.03000 1.01446 1.46537 1.05216 1.01967 1.79443 1.18118 0.91686 0.86039 0.93967 1.20899 1.00374 0.91265 1.10686 1.21193 0.94562 0.97669 0.96238 1.21195 0.94667 0.98476 1.06813 1.21161 1.00387 0.91844 0.96410 1.20912 0.92603 0.99329 1.11138 1.21818 0.97000 0.83038 0.93727 0.87770 1.22839 1.03035 0.92831 0.97394 1.23071 0.97346 0.97230 0.91005 1.64795 1.54404 1.02692 1.03047 1.22163 0.97462 0.90136 0.96010 1.18952 0.94998 0.91370 0.94957 1.21621 1.41934 0.92478 1.02413 0.92284 1.25950 0.94729 1.02353 0.96562 1.70096 1.44321 1.23048 1.19597 0.85439 0.78150 0.78253 0.79159 1.19691 1.20674 1.18797 1.23287 0.98466 0.91353 0.97164 0.93182 0.90379 0.91489 0.85273 0.84281 0.84744 0.84655 0.85994 0.89431 0.90422 0.91749 0.94340 0.95749 0.92082 0.98282 0.99029 0.92713 0.93447 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.89 8.83 127.77 1.13 3.02 16 2 N -0.62 -14.09 2.93 -693.16 -2.03 -16.12 16 3 C 0.20 4.54 6.54 38.22 0.25 4.79 16 4 C -0.21 -4.15 9.16 22.40 0.21 -3.94 16 5 C -0.08 -1.34 10.04 22.25 0.22 -1.12 16 6 C -0.19 -3.24 10.04 22.29 0.22 -3.02 16 7 C -0.08 -1.45 10.04 22.25 0.22 -1.23 16 8 C -0.22 -4.63 9.31 22.40 0.21 -4.42 16 9 C 0.15 3.64 3.33 45.87 0.15 3.79 16 10 H 0.10 2.33 5.39 -2.39 -0.01 2.32 16 11 C -0.12 -3.15 6.66 31.80 0.21 -2.94 16 12 C 0.04 1.41 5.10 86.65 0.44 1.86 16 13 N -0.52 -18.92 5.40 -883.02 -4.76 -23.69 16 14 C 0.07 3.00 4.97 86.30 0.43 3.43 16 15 C 0.03 1.85 4.63 29.85 0.14 1.99 16 16 C -0.55 -31.37 9.11 25.60 0.23 -31.14 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.00 0.13 5.46 84.65 0.46 0.59 16 19 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 20 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 21 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 23 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 24 C 0.03 0.76 5.83 86.45 0.50 1.26 16 25 H 0.05 0.98 7.91 -2.39 -0.02 0.96 16 26 H 0.08 1.34 6.45 -2.39 -0.02 1.33 16 27 H 0.07 1.57 6.63 -2.39 -0.02 1.55 16 28 H 0.13 2.22 6.30 -2.91 -0.02 2.20 16 29 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.13 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 32 H 0.12 2.46 5.77 -2.91 -0.02 2.44 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 2.03 7.07 -2.39 -0.02 2.01 16 35 H 0.06 2.47 7.66 -2.39 -0.02 2.45 16 36 H 0.04 1.35 8.00 -2.39 -0.02 1.33 16 37 H 0.02 1.02 7.81 -2.39 -0.02 1.01 16 38 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 39 H 0.00 -0.06 6.79 -2.39 -0.02 -0.08 16 40 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 41 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 42 H 0.05 1.36 7.57 -2.39 -0.02 1.34 16 43 H 0.08 2.32 6.80 -2.39 -0.02 2.30 16 Total: -1.00 -64.83 336.33 1.53 -63.30 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.98 Total: 13.77 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 5.04 Total: -27.06 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -6.51 Total: -96.42 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -64.83 1.53 -63.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595825686.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.815 kcal (2) G-P(sol) polarization free energy of solvation -64.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds