Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47197 * 239.99690 * 3 2 1 5 5 H 1.48499 * 109.47436 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47271 * 119.99977 * 3 2 1 7 7 C 1.38812 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99840 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99773 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47101 * 327.16133 * 10 9 7 12 12 C 1.53000 * 109.46767 * 87.16519 * 10 9 7 13 13 O 1.42900 * 109.47306 * 64.99994 * 12 10 9 14 14 C 1.50706 * 109.46781 * 207.16061 * 10 9 7 15 15 C 1.38241 * 119.99944 * 332.93250 * 14 10 9 16 16 C 1.38225 * 120.03797 * 179.97438 * 15 14 10 17 17 C 1.38257 * 120.03569 * 359.97438 * 16 15 14 18 18 C 1.38307 * 120.00001 * 0.02562 * 17 16 15 19 19 Cl 1.73589 * 120.01852 * 180.02562 * 18 17 16 20 20 C 1.38302 * 119.99488 * 152.90914 * 14 10 9 21 21 Cl 1.73603 * 120.02161 * 359.97438 * 20 14 10 22 22 H 0.97001 * 120.00343 * 0.02562 * 1 2 3 23 23 H 0.97002 * 119.99999 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.46470 * 184.99713 * 12 10 9 25 25 H 1.09000 * 109.47099 * 304.99712 * 12 10 9 26 26 H 0.96699 * 113.99951 * 179.97438 * 13 12 10 27 27 H 1.07997 * 119.98483 * 359.70235 * 15 14 10 28 28 H 1.08000 * 119.98436 * 180.02562 * 16 15 14 29 29 H 1.08001 * 119.99881 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9875 -3.5397 -0.5578 12 6 2.3748 -4.0628 1.4402 13 8 1.1570 -4.3294 2.1387 14 6 1.2144 -4.7240 -0.6492 15 6 -0.1642 -4.6254 -0.6241 16 6 -0.9388 -5.6034 -1.2192 17 6 -0.3355 -6.6811 -1.8407 18 6 1.0437 -6.7812 -1.8666 19 17 1.8016 -8.1338 -2.6473 20 6 1.8196 -5.8016 -1.2698 21 17 3.5509 -5.9252 -1.3026 22 1 -0.4851 0.8400 -0.0004 23 1 0.3555 -2.3881 -0.0005 24 1 2.9955 -4.9588 1.4370 25 1 2.9088 -3.2526 1.9369 26 1 1.2821 -4.5934 3.0605 27 1 -0.6365 -3.7860 -0.1355 28 1 -2.0158 -5.5253 -1.1995 29 1 -0.9413 -7.4447 -2.3058 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595828569.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -23.399319 kcal Electronic energy + Delta-G solvation = -16921.511441 eV Core-core repulsion = 13896.800033 eV Total energy + Delta-G solvation = -3024.711408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.022 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.47899 -36.89597 -36.28461 -36.16141 -34.40757 -32.11964 -30.42132 -29.73322 -27.33944 -24.06113 -22.97123 -22.27424 -19.97948 -17.85634 -16.87820 -16.54911 -15.65791 -15.38543 -14.74652 -14.17433 -14.00625 -13.93261 -13.42160 -13.24095 -12.66895 -12.26533 -11.87468 -11.66841 -11.40488 -11.19504 -11.09599 -10.91100 -10.82847 -10.68474 -10.41536 -10.14546 -9.78156 -9.36317 -9.02658 -8.48760 -8.45601 -7.05787 -5.82532 -3.11904 1.23502 1.37211 2.00825 2.40907 3.41233 3.45865 3.46577 3.75199 4.51800 4.77591 4.94564 5.13540 5.31681 5.38028 5.49439 5.58033 5.71085 5.84299 5.98579 6.10475 6.24648 6.33515 6.41083 6.63440 6.82240 6.91545 7.62981 8.19250 8.35080 9.47047 9.99815 10.36175 11.39769 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.005567 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.906040 B = 5028.856219 C = 5266.680337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.247 4.247 8 H 0.071 0.929 9 N -0.711 5.711 10 C 0.210 3.790 11 H 0.081 0.919 12 C 0.062 3.938 13 O -0.559 6.559 14 C -0.039 4.039 15 C -0.070 4.070 16 C -0.106 4.106 17 C -0.115 4.115 18 C -0.034 4.034 19 Cl -0.067 7.067 20 C -0.034 4.034 21 Cl -0.058 7.058 22 H 0.257 0.743 23 H 0.388 0.612 24 H 0.029 0.971 25 H 0.051 0.949 26 H 0.363 0.637 27 H 0.145 0.855 28 H 0.135 0.865 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.492 -14.734 -1.232 14.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.739 3.261 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.353 5.353 10 C 0.099 3.901 11 H 0.099 0.901 12 C -0.019 4.019 13 O -0.362 6.362 14 C -0.041 4.041 15 C -0.088 4.088 16 C -0.125 4.125 17 C -0.133 4.133 18 C -0.062 4.062 19 Cl -0.038 7.038 20 C -0.062 4.062 21 Cl -0.029 7.029 22 H 0.067 0.933 23 H 0.225 0.775 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.208 0.792 27 H 0.163 0.837 28 H 0.152 0.848 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.564 -14.520 -1.913 14.728 hybrid contribution 0.673 0.638 0.503 1.056 sum 2.237 -13.882 -1.410 14.131 Atomic orbital electron populations 1.69648 1.05127 1.25965 1.56878 1.24732 0.95519 0.97682 1.02489 0.86255 0.78548 0.83381 0.77895 1.21156 1.21635 1.21213 1.19193 0.91029 0.83891 1.43632 0.91071 1.42438 1.05978 0.98871 1.88061 1.19347 0.94391 0.84921 0.91408 0.90125 1.23036 0.86015 0.97419 0.95400 1.86549 1.31578 1.91141 1.26963 1.20164 0.94974 0.93782 0.95181 1.21186 0.92494 0.98591 0.96578 1.21218 1.00514 0.93455 0.97266 1.20900 0.91495 0.99646 1.01305 1.20625 0.92890 0.90957 1.01698 1.98350 1.82154 1.43902 1.79357 1.20582 0.84929 0.96907 1.03779 1.98349 1.09547 1.97657 1.97363 0.93316 0.77532 0.95303 0.93076 0.79205 0.83711 0.84758 0.84724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.38 13.06 55.49 0.72 -26.66 15 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 15 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 15 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 15 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 7 C -0.25 -6.69 9.93 -15.06 -0.15 -6.84 15 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 15 9 N -0.71 -17.52 4.97 -54.54 -0.27 -17.79 15 10 C 0.21 4.25 2.46 -69.08 -0.17 4.08 15 11 H 0.08 1.65 6.95 -51.93 -0.36 1.29 15 12 C 0.06 1.12 6.86 37.16 0.26 1.38 15 13 O -0.56 -9.86 12.79 -35.23 -0.45 -10.31 15 14 C -0.04 -0.71 4.68 -104.59 -0.49 -1.20 15 15 C -0.07 -1.22 8.85 -39.59 -0.35 -1.57 15 16 C -0.11 -1.50 10.05 -39.58 -0.40 -1.90 15 17 C -0.11 -1.53 9.83 -39.55 -0.39 -1.92 15 18 C -0.03 -0.51 6.32 -39.46 -0.25 -0.76 15 19 Cl -0.07 -0.87 27.96 -51.86 -1.45 -2.32 15 20 C -0.03 -0.56 6.32 -39.47 -0.25 -0.81 15 21 Cl -0.06 -0.89 26.36 -51.86 -1.37 -2.26 15 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 15 23 H 0.39 10.06 5.50 -40.82 -0.22 9.83 15 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 15 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 15 26 H 0.36 4.65 9.12 45.56 0.42 5.06 15 27 H 0.15 2.78 6.17 -52.49 -0.32 2.45 15 28 H 0.13 1.52 8.06 -52.49 -0.42 1.10 15 29 H 0.13 1.42 8.06 -52.49 -0.42 1.00 15 LS Contribution 283.09 15.07 4.27 4.27 Total: -1.00 -30.09 283.09 -7.59 -37.68 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -1.73 Total: 10.28 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -2.29 Total: -9.84 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.45 Total: -44.45 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.45 Total: -10.31 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -2.82 Total: -4.58 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.09 -7.59 -37.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595828569.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.278 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds