Wall clock time and date at job start Mon Mar 30 2020 01:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86790 * 119.99834 * 2 1 4 4 H 1.48507 * 109.47197 * 239.99690 * 3 2 1 5 5 H 1.48499 * 109.47436 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47271 * 119.99977 * 3 2 1 7 7 C 1.38812 * 119.99686 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99840 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99773 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.47101 * 327.16133 * 10 9 7 12 12 C 1.53000 * 109.46767 * 87.16519 * 10 9 7 13 13 O 1.42900 * 109.47306 * 64.99994 * 12 10 9 14 14 C 1.50706 * 109.46781 * 207.16061 * 10 9 7 15 15 C 1.38241 * 119.99944 * 332.93250 * 14 10 9 16 16 C 1.38225 * 120.03797 * 179.97438 * 15 14 10 17 17 C 1.38257 * 120.03569 * 359.97438 * 16 15 14 18 18 C 1.38307 * 120.00001 * 0.02562 * 17 16 15 19 19 Cl 1.73589 * 120.01852 * 180.02562 * 18 17 16 20 20 C 1.38302 * 119.99488 * 152.90914 * 14 10 9 21 21 Cl 1.73603 * 120.02161 * 359.97438 * 20 14 10 22 22 H 0.97001 * 120.00343 * 0.02562 * 1 2 3 23 23 H 0.97002 * 119.99999 * 0.02562 * 9 7 2 24 24 H 1.09000 * 109.46470 * 184.99713 * 12 10 9 25 25 H 1.09000 * 109.47099 * 304.99712 * 12 10 9 26 26 H 0.96699 * 113.99951 * 179.97438 * 13 12 10 27 27 H 1.07997 * 119.98483 * 359.70235 * 15 14 10 28 28 H 1.08000 * 119.98436 * 180.02562 * 16 15 14 29 29 H 1.08001 * 119.99881 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9875 -3.5397 -0.5578 12 6 2.3748 -4.0628 1.4402 13 8 1.1570 -4.3294 2.1387 14 6 1.2144 -4.7240 -0.6492 15 6 -0.1642 -4.6254 -0.6241 16 6 -0.9388 -5.6034 -1.2192 17 6 -0.3355 -6.6811 -1.8407 18 6 1.0437 -6.7812 -1.8666 19 17 1.8016 -8.1338 -2.6473 20 6 1.8196 -5.8016 -1.2698 21 17 3.5509 -5.9252 -1.3026 22 1 -0.4851 0.8400 -0.0004 23 1 0.3555 -2.3881 -0.0005 24 1 2.9955 -4.9588 1.4370 25 1 2.9088 -3.2526 1.9369 26 1 1.2821 -4.5934 3.0605 27 1 -0.6365 -3.7860 -0.1355 28 1 -2.0158 -5.5253 -1.1995 29 1 -0.9413 -7.4447 -2.3058 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595828569.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:53 Heat of formation + Delta-G solvation = -43.576452 kcal Electronic energy + Delta-G solvation = -16922.386387 eV Core-core repulsion = 13896.800033 eV Total energy + Delta-G solvation = -3025.586354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.022 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.75148 -38.25680 -37.50393 -37.35814 -36.10104 -33.87476 -31.71569 -31.28016 -28.91458 -25.92344 -24.34362 -23.57591 -21.44648 -19.60467 -18.21870 -18.13306 -17.05991 -16.64019 -16.32504 -15.86685 -15.39278 -15.23426 -14.93414 -14.75608 -14.23143 -13.71405 -13.18577 -12.91455 -12.85229 -12.82179 -12.64877 -12.49437 -12.23938 -12.13610 -11.84591 -11.74117 -11.68470 -11.02917 -10.75555 -9.73255 -9.67227 -9.04291 -7.93649 -5.22654 0.02331 0.16301 0.83925 1.21289 1.48389 1.50878 1.56745 2.51713 2.57336 3.37650 3.48926 3.64279 3.85207 4.00204 4.10257 4.32468 4.40383 4.48590 4.57626 4.68935 4.88715 4.92451 5.05274 5.31343 5.45642 5.54467 5.68847 6.26830 7.02311 7.34754 8.05324 8.32132 9.29457 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.025086 B = 0.005567 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.906040 B = 5028.856219 C = 5266.680337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.279 1.279 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.077 0.923 9 N -0.724 5.724 10 C 0.205 3.795 11 H 0.074 0.926 12 C 0.073 3.927 13 O -0.574 6.574 14 C -0.058 4.058 15 C -0.090 4.090 16 C -0.096 4.096 17 C -0.101 4.101 18 C -0.038 4.038 19 Cl -0.049 7.049 20 C -0.044 4.044 21 Cl -0.054 7.054 22 H 0.252 0.748 23 H 0.379 0.621 24 H 0.054 0.946 25 H 0.037 0.963 26 H 0.385 0.615 27 H 0.119 0.881 28 H 0.165 0.835 29 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.708 -16.392 -1.705 16.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.261 4.261 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.222 1.222 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.094 0.906 9 N -0.366 5.366 10 C 0.096 3.904 11 H 0.092 0.908 12 C -0.008 4.008 13 O -0.380 6.380 14 C -0.060 4.060 15 C -0.109 4.109 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.066 4.066 19 Cl -0.020 7.020 20 C -0.072 4.072 21 Cl -0.025 7.025 22 H 0.060 0.940 23 H 0.214 0.786 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.233 0.767 27 H 0.137 0.863 28 H 0.183 0.817 29 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.825 -16.229 -2.368 16.502 hybrid contribution 0.619 0.977 0.634 1.319 sum 2.444 -15.252 -1.733 15.543 Atomic orbital electron populations 1.69804 1.06520 1.26140 1.59029 1.25499 0.96337 1.00833 1.03474 0.85253 0.77238 0.79343 0.78147 1.20496 1.22217 1.20403 1.19581 0.91475 0.85033 1.41688 0.90557 1.42567 1.05722 0.99891 1.88383 1.19464 0.94045 0.84059 0.92858 0.90812 1.22758 0.86218 0.97933 0.93864 1.86504 1.31537 1.91248 1.28749 1.19927 0.95128 0.94198 0.96724 1.21094 0.92620 0.99138 0.98066 1.21511 1.01828 0.92365 0.95715 1.21310 0.91144 0.99683 0.99796 1.20816 0.93537 0.91028 1.01219 1.98359 1.82031 1.42736 1.78877 1.20612 0.85374 0.97067 1.04109 1.98344 1.09150 1.97614 1.97370 0.93970 0.78634 0.92815 0.94477 0.76748 0.86318 0.81749 0.81117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.35 13.06 21.65 0.28 -58.06 15 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 15 3 Si 0.97 45.74 29.55 68.60 2.03 47.77 15 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 15 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 15 6 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 7 C -0.25 -13.55 9.93 84.03 0.83 -12.71 15 8 H 0.08 4.01 7.83 -2.91 -0.02 3.98 15 9 N -0.72 -36.50 4.97 -326.47 -1.62 -38.12 15 10 C 0.20 8.34 2.46 44.25 0.11 8.45 15 11 H 0.07 3.05 6.95 -2.39 -0.02 3.03 15 12 C 0.07 2.60 6.86 71.98 0.49 3.10 15 13 O -0.57 -20.04 12.79 -148.98 -1.90 -21.94 15 14 C -0.06 -2.09 4.68 -19.85 -0.09 -2.18 15 15 C -0.09 -3.13 8.85 22.27 0.20 -2.94 15 16 C -0.10 -2.50 10.05 22.27 0.22 -2.28 15 17 C -0.10 -2.35 9.83 22.29 0.22 -2.13 15 18 C -0.04 -1.05 6.32 22.35 0.14 -0.90 15 19 Cl -0.05 -1.15 27.96 -2.72 -0.08 -1.23 15 20 C -0.04 -1.38 6.32 22.34 0.14 -1.24 15 21 Cl -0.05 -1.59 26.36 -2.72 -0.07 -1.66 15 22 H 0.25 14.79 8.31 -92.71 -0.77 14.02 15 23 H 0.38 20.36 5.50 -92.71 -0.51 19.85 15 24 H 0.05 1.64 8.14 -2.39 -0.02 1.63 15 25 H 0.04 1.41 8.14 -2.39 -0.02 1.39 15 26 H 0.38 9.45 9.12 -74.06 -0.68 8.77 15 27 H 0.12 4.73 6.17 -2.91 -0.02 4.72 15 28 H 0.16 3.21 8.06 -2.91 -0.02 3.19 15 29 H 0.17 2.76 8.06 -2.91 -0.02 2.74 15 Total: -1.00 -64.85 283.09 1.39 -63.46 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.02 Total: 26.06 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 2.73 Total: -16.27 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -1.34 Total: -96.19 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.90 Total: -21.94 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Atomic # 17 Polarization: -2.74 SS G_CDS: -0.15 Total: -2.89 kcal Total: -64.85 1.39 -63.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595828569.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.884 kcal (2) G-P(sol) polarization free energy of solvation -64.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds