Wall clock time and date at job start Mon Mar 30 2020 01:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00333 * 2 1 4 4 C 1.46902 * 110.99983 * 123.95797 * 2 1 3 5 5 C 1.50700 * 109.47528 * 66.04550 * 4 2 1 6 6 C 1.38306 * 119.96628 * 89.99720 * 5 4 2 7 7 C 1.38258 * 120.15106 * 179.97438 * 6 5 4 8 8 C 1.38120 * 120.07652 * 0.04496 * 7 6 5 9 9 C 1.38895 * 119.92526 * 0.23255 * 8 7 6 10 10 N 1.39671 * 120.07581 * 179.74899 * 9 8 7 11 11 C 1.46496 * 120.00080 * 359.97438 * 10 9 8 12 12 C 1.53002 * 109.47385 * 180.71226 * 11 10 9 13 13 C 1.50699 * 115.54719 * 65.12349 * 12 11 10 14 14 H 1.08009 * 120.00023 * 265.35789 * 13 12 11 15 15 C 1.37878 * 120.00104 * 85.36527 * 13 12 11 16 16 N 1.31516 * 119.99883 * 353.37900 * 15 13 12 17 17 Si 1.86797 * 120.00067 * 173.38327 * 15 13 12 18 18 H 1.48497 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47205 * 119.99841 * 17 15 13 20 20 H 1.48497 * 109.47334 * 239.99493 * 17 15 13 21 21 C 1.52999 * 117.49675 * 279.45655 * 12 11 10 22 22 C 1.52993 * 117.50175 * 210.79693 * 12 11 10 23 23 C 1.38083 * 119.95780 * 269.98127 * 5 4 2 24 24 H 1.09001 * 109.46301 * 296.04033 * 1 2 3 25 25 H 1.08996 * 109.46832 * 56.04215 * 1 2 3 26 26 H 1.09001 * 109.46896 * 176.04704 * 1 2 3 27 27 H 1.08996 * 109.46978 * 183.95177 * 3 2 1 28 28 H 1.08994 * 109.46834 * 303.95834 * 3 2 1 29 29 H 1.09008 * 109.46644 * 63.95304 * 3 2 1 30 30 H 1.08995 * 109.47001 * 306.04418 * 4 2 1 31 31 H 1.08998 * 109.46944 * 186.04225 * 4 2 1 32 32 H 1.08004 * 119.92104 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.96438 * 180.02562 * 7 6 5 34 34 H 1.08005 * 120.04192 * 179.97438 * 8 7 6 35 35 H 0.97002 * 119.99966 * 180.02562 * 10 9 8 36 36 H 1.09007 * 109.47135 * 300.71149 * 11 10 9 37 37 H 1.08998 * 109.47219 * 60.71448 * 11 10 9 38 38 H 0.96996 * 119.99989 * 185.04683 * 16 15 13 39 39 H 1.08998 * 117.49907 * 0.02562 * 21 12 11 40 40 H 1.08999 * 117.49770 * 145.02045 * 21 12 11 41 41 H 1.09003 * 117.50250 * 214.98083 * 22 12 11 42 42 H 1.09008 * 117.49877 * 359.97438 * 22 12 11 43 43 H 1.08001 * 120.04267 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6370 -2.2205 0.9728 6 6 2.4949 -3.0715 0.3000 7 6 2.1701 -4.4067 0.1471 8 6 0.9865 -4.8949 0.6654 9 6 0.1199 -4.0418 1.3366 10 7 -1.0802 -4.5310 1.8573 11 6 -1.4265 -5.9452 1.6954 12 6 -2.7896 -6.2133 2.3366 13 6 -3.9600 -5.5185 1.6897 14 1 -4.3041 -4.5694 2.0736 15 6 -4.5916 -6.0944 0.6079 16 7 -4.0954 -7.1817 0.0590 17 14 -6.1520 -5.3304 -0.0782 18 1 -6.4998 -4.1216 0.7112 19 1 -5.9340 -4.9488 -1.4967 20 1 -7.2623 -6.3130 0.0050 21 6 -2.8313 -6.4030 3.8542 22 6 -3.0316 -7.6040 2.9266 23 6 0.4525 -2.7020 1.4941 24 1 -0.3632 0.4512 0.9234 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0829 1.3431 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7045 1.8723 0.9234 30 1 1.5612 -0.3874 2.0627 31 1 3.0798 -0.6612 1.1755 32 1 3.4207 -2.6922 -0.1068 33 1 2.8424 -5.0687 -0.3784 34 1 0.7331 -5.9379 0.5452 35 1 -1.6848 -3.9342 2.3256 36 1 -1.4699 -6.1895 0.6339 37 1 -0.6696 -6.5624 2.1796 38 1 -4.4969 -7.5453 -0.7457 39 1 -1.8878 -6.3364 4.3958 40 1 -3.7055 -6.0257 4.3847 41 1 -4.0375 -8.0164 2.8472 42 1 -2.2198 -8.3282 2.8575 43 1 -0.2171 -2.0370 2.0192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601936604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:44 Heat of formation + Delta-G solvation = 52.528458 kcal Electronic energy + Delta-G solvation = -20892.356438 eV Core-core repulsion = 17937.879136 eV Total energy + Delta-G solvation = -2954.477302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.30094 -37.42682 -36.61936 -34.07903 -31.99832 -31.16959 -29.20482 -27.54447 -26.51795 -25.80489 -24.82826 -22.28721 -21.86162 -21.15948 -19.95004 -19.16649 -16.67836 -16.19466 -15.66999 -15.44420 -15.22261 -14.84355 -14.64188 -14.45026 -13.91534 -13.42322 -13.33476 -12.92212 -12.67758 -12.50848 -12.28229 -12.05696 -11.75917 -11.63615 -11.58669 -11.45597 -11.04050 -10.96045 -10.90260 -10.53754 -10.45449 -10.27565 -9.59150 -9.48558 -8.85746 -8.53116 -8.51518 -8.24887 -8.20800 -6.68256 -6.10551 -4.17970 1.81314 2.15424 3.23651 3.32753 3.35307 3.94469 4.21407 4.35098 4.48251 4.94861 5.08685 5.17956 5.20662 5.29855 5.30182 5.43577 5.49510 5.62799 5.63840 5.71237 5.72180 5.88161 5.96210 6.05280 6.08351 6.25291 6.32039 6.37025 6.45884 6.55036 6.66475 6.80360 6.85206 6.92618 6.97661 7.03169 7.04680 7.12776 7.37235 7.38335 7.47992 7.79769 8.12429 8.33001 8.54847 8.82766 9.48740 10.97500 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.004557 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.500943 B = 6142.817984 C = 6958.983889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.541 5.541 3 C 0.025 3.975 4 C 0.096 3.904 5 C -0.035 4.035 6 C -0.178 4.178 7 C -0.072 4.072 8 C -0.203 4.203 9 C 0.234 3.766 10 N -0.721 5.721 11 C 0.167 3.833 12 C 0.030 3.970 13 C -0.497 4.497 14 H 0.059 0.941 15 C 0.074 3.926 16 N -0.876 5.876 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C -0.211 4.211 22 C -0.149 4.149 23 C -0.203 4.203 24 H 0.023 0.977 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.399 0.601 36 H 0.066 0.934 37 H 0.027 0.973 38 H 0.261 0.739 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.170 10.153 1.492 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.124 4.124 4 C -0.031 4.031 5 C -0.036 4.036 6 C -0.199 4.199 7 C -0.091 4.091 8 C -0.226 4.226 9 C 0.125 3.875 10 N -0.344 5.344 11 C 0.043 3.957 12 C 0.030 3.970 13 C -0.534 4.534 14 H 0.077 0.923 15 C -0.129 4.129 16 N -0.513 5.513 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.248 4.248 22 C -0.187 4.187 23 C -0.227 4.227 24 H 0.041 0.959 25 H 0.083 0.917 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.233 0.767 36 H 0.084 0.916 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.175 9.526 0.927 14.714 hybrid contribution -1.465 0.863 0.374 1.741 sum 9.710 10.389 1.301 14.280 Atomic orbital electron populations 1.22495 0.86945 1.03504 0.99909 1.61979 1.08483 1.13011 1.42941 1.22385 1.00603 0.89069 1.00315 1.21045 0.99896 0.90788 0.91366 1.19225 0.93955 0.93727 0.96731 1.20502 1.00843 0.93531 1.05059 1.20780 0.95708 0.95153 0.97438 1.20670 0.96260 0.99843 1.05876 1.17922 0.86560 0.91974 0.90996 1.44891 1.18421 1.11009 1.60106 1.20970 0.94705 0.79361 1.00688 1.18989 0.92940 0.96362 0.88738 1.20369 1.12381 1.05784 1.14899 0.92290 1.24959 0.97011 0.94405 0.96570 1.69972 1.40647 1.21000 1.19655 0.86587 0.83588 0.79263 0.78884 1.19762 1.20984 1.20932 1.23011 1.00189 1.06175 0.95429 1.22493 1.00815 0.91244 1.04172 1.20349 0.99030 0.94075 1.09257 0.95853 0.91735 0.90064 0.91498 0.91451 0.95907 0.94314 0.90286 0.87268 0.86900 0.86352 0.76684 0.91583 0.95437 0.92934 0.91655 0.90455 0.89876 0.91751 0.87148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.14 60.07 0.55 0.79 16 2 N -0.54 -6.64 5.01 -252.72 -1.27 -7.90 16 3 C 0.02 0.23 9.57 60.07 0.57 0.81 16 4 C 0.10 1.18 5.12 -4.97 -0.03 1.15 16 5 C -0.04 -0.51 4.88 -104.65 -0.51 -1.03 16 6 C -0.18 -2.60 9.70 -39.55 -0.38 -2.98 16 7 C -0.07 -1.10 10.04 -39.62 -0.40 -1.49 16 8 C -0.20 -3.54 9.31 -39.38 -0.37 -3.91 16 9 C 0.23 4.21 6.65 -83.78 -0.56 3.65 16 10 N -0.72 -14.00 5.65 -58.63 -0.33 -14.33 16 11 C 0.17 3.60 4.74 -4.04 -0.02 3.58 16 12 C 0.03 0.71 1.37 -155.66 -0.21 0.49 16 13 C -0.50 -12.84 8.66 -34.44 -0.30 -13.14 16 14 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 15 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 16 N -0.88 -24.05 12.92 55.43 0.72 -23.34 16 17 Si 0.89 20.71 29.55 -169.99 -5.02 15.68 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.21 -4.39 9.96 -26.70 -0.27 -4.66 16 22 C -0.15 -3.36 9.42 -26.70 -0.25 -3.62 16 23 C -0.20 -3.26 7.81 -39.38 -0.31 -3.57 16 24 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 25 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 26 H 0.08 1.18 6.17 -51.93 -0.32 0.86 16 27 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 28 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.02 0.20 8.14 -51.92 -0.42 -0.22 16 30 H 0.04 0.46 8.06 -51.93 -0.42 0.04 16 31 H 0.08 0.85 8.01 -51.93 -0.42 0.44 16 32 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 33 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.12 2.10 6.73 -52.48 -0.35 1.75 16 35 H 0.40 7.64 8.41 -40.82 -0.34 7.30 16 36 H 0.07 1.61 7.92 -51.92 -0.41 1.19 16 37 H 0.03 0.57 7.93 -51.93 -0.41 0.15 16 38 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 41 H 0.08 2.01 8.14 -51.93 -0.42 1.58 16 42 H 0.06 1.36 8.14 -51.92 -0.42 0.94 16 43 H 0.11 1.67 8.03 -52.49 -0.42 1.24 16 LS Contribution 352.92 15.07 5.32 5.32 Total: -1.00 -27.10 352.92 -10.44 -37.54 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -7.29 Total: 9.07 kcal Atomic # 6 Polarization: -19.47 SS G_CDS: -2.57 Total: -22.04 kcal Atomic # 7 Polarization: -44.69 SS G_CDS: -0.88 Total: -45.57 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -27.10 -10.44 -37.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601936604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.073 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds