Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 111.00333 * 2 1 4 4 C 1.46902 * 110.99983 * 123.95797 * 2 1 3 5 5 C 1.50700 * 109.47528 * 66.04550 * 4 2 1 6 6 C 1.38306 * 119.96628 * 89.99720 * 5 4 2 7 7 C 1.38258 * 120.15106 * 179.97438 * 6 5 4 8 8 C 1.38120 * 120.07652 * 0.04496 * 7 6 5 9 9 C 1.38895 * 119.92526 * 0.23255 * 8 7 6 10 10 N 1.39671 * 120.07581 * 179.74899 * 9 8 7 11 11 C 1.46496 * 120.00080 * 359.97438 * 10 9 8 12 12 C 1.53002 * 109.47385 * 180.71226 * 11 10 9 13 13 C 1.50699 * 115.54719 * 65.12349 * 12 11 10 14 14 H 1.08009 * 120.00023 * 265.35789 * 13 12 11 15 15 C 1.37878 * 120.00104 * 85.36527 * 13 12 11 16 16 N 1.31516 * 119.99883 * 353.37900 * 15 13 12 17 17 Si 1.86797 * 120.00067 * 173.38327 * 15 13 12 18 18 H 1.48497 * 109.47255 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47205 * 119.99841 * 17 15 13 20 20 H 1.48497 * 109.47334 * 239.99493 * 17 15 13 21 21 C 1.52999 * 117.49675 * 279.45655 * 12 11 10 22 22 C 1.52993 * 117.50175 * 210.79693 * 12 11 10 23 23 C 1.38083 * 119.95780 * 269.98127 * 5 4 2 24 24 H 1.09001 * 109.46301 * 296.04033 * 1 2 3 25 25 H 1.08996 * 109.46832 * 56.04215 * 1 2 3 26 26 H 1.09001 * 109.46896 * 176.04704 * 1 2 3 27 27 H 1.08996 * 109.46978 * 183.95177 * 3 2 1 28 28 H 1.08994 * 109.46834 * 303.95834 * 3 2 1 29 29 H 1.09008 * 109.46644 * 63.95304 * 3 2 1 30 30 H 1.08995 * 109.47001 * 306.04418 * 4 2 1 31 31 H 1.08998 * 109.46944 * 186.04225 * 4 2 1 32 32 H 1.08004 * 119.92104 * 359.97438 * 6 5 4 33 33 H 1.08000 * 119.96438 * 180.02562 * 7 6 5 34 34 H 1.08005 * 120.04192 * 179.97438 * 8 7 6 35 35 H 0.97002 * 119.99966 * 180.02562 * 10 9 8 36 36 H 1.09007 * 109.47135 * 300.71149 * 11 10 9 37 37 H 1.08998 * 109.47219 * 60.71448 * 11 10 9 38 38 H 0.96996 * 119.99989 * 185.04683 * 16 15 13 39 39 H 1.08998 * 117.49907 * 0.02562 * 21 12 11 40 40 H 1.08999 * 117.49770 * 145.02045 * 21 12 11 41 41 H 1.09003 * 117.50250 * 214.98083 * 22 12 11 42 42 H 1.09008 * 117.49877 * 359.97438 * 22 12 11 43 43 H 1.08001 * 120.04267 * 0.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6370 -2.2205 0.9728 6 6 2.4949 -3.0715 0.3000 7 6 2.1701 -4.4067 0.1471 8 6 0.9865 -4.8949 0.6654 9 6 0.1199 -4.0418 1.3366 10 7 -1.0802 -4.5310 1.8573 11 6 -1.4265 -5.9452 1.6954 12 6 -2.7896 -6.2133 2.3366 13 6 -3.9600 -5.5185 1.6897 14 1 -4.3041 -4.5694 2.0736 15 6 -4.5916 -6.0944 0.6079 16 7 -4.0954 -7.1817 0.0590 17 14 -6.1520 -5.3304 -0.0782 18 1 -6.4998 -4.1216 0.7112 19 1 -5.9340 -4.9488 -1.4967 20 1 -7.2623 -6.3130 0.0050 21 6 -2.8313 -6.4030 3.8542 22 6 -3.0316 -7.6040 2.9266 23 6 0.4525 -2.7020 1.4941 24 1 -0.3632 0.4512 0.9234 25 1 -0.3633 0.5740 -0.8524 26 1 -0.3633 -1.0252 -0.0708 27 1 3.0829 1.3431 -0.0708 28 1 1.5899 1.9163 -0.8524 29 1 1.7045 1.8723 0.9234 30 1 1.5612 -0.3874 2.0627 31 1 3.0798 -0.6612 1.1755 32 1 3.4207 -2.6922 -0.1068 33 1 2.8424 -5.0687 -0.3784 34 1 0.7331 -5.9379 0.5452 35 1 -1.6848 -3.9342 2.3256 36 1 -1.4699 -6.1895 0.6339 37 1 -0.6696 -6.5624 2.1796 38 1 -4.4969 -7.5453 -0.7457 39 1 -1.8878 -6.3364 4.3958 40 1 -3.7055 -6.0257 4.3847 41 1 -4.0375 -8.0164 2.8472 42 1 -2.2198 -8.3282 2.8575 43 1 -0.2171 -2.0370 2.0192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601936604.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = 38.021896 kcal Electronic energy + Delta-G solvation = -20892.985489 eV Core-core repulsion = 17937.879136 eV Total energy + Delta-G solvation = -2955.106353 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.53742 -38.87973 -37.89491 -35.50643 -33.99734 -32.32102 -30.57974 -28.43917 -27.71534 -27.55139 -26.46575 -23.39256 -23.11600 -22.80880 -21.32252 -20.84574 -18.27558 -17.72224 -17.02036 -16.63552 -16.41133 -16.33283 -15.97798 -15.62172 -15.54112 -14.93998 -14.55133 -14.38956 -14.28507 -13.63736 -13.43895 -13.25800 -13.16562 -12.95088 -12.85410 -12.84243 -12.59794 -12.43838 -12.36633 -12.12029 -12.02472 -11.64285 -11.41691 -11.01751 -10.63488 -10.46214 -10.03951 -9.65706 -9.22118 -8.14344 -8.08159 -6.23864 0.58222 0.89062 1.37161 1.41083 1.49887 2.39675 2.70519 2.92970 3.16115 3.37773 3.53546 3.91680 4.07999 4.24321 4.30309 4.32419 4.47164 4.49610 4.54884 4.61286 4.64588 4.66034 4.71006 4.74057 4.80527 4.84844 4.91990 4.97295 5.05270 5.08196 5.12853 5.23763 5.26859 5.56441 5.60622 5.61862 5.74000 5.75924 5.87337 6.07056 6.09798 6.21365 6.35614 6.66240 6.81207 7.08706 7.44696 8.95214 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.004557 C = 0.004023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.500943 B = 6142.817984 C = 6958.983889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.554 5.554 3 C 0.025 3.975 4 C 0.099 3.901 5 C -0.035 4.035 6 C -0.174 4.174 7 C -0.073 4.073 8 C -0.224 4.224 9 C 0.209 3.791 10 N -0.727 5.727 11 C 0.188 3.812 12 C 0.007 3.993 13 C -0.503 4.503 14 H 0.053 0.947 15 C 0.029 3.971 16 N -0.905 5.905 17 Si 0.945 3.055 18 H -0.268 1.268 19 H -0.285 1.285 20 H -0.282 1.282 21 C -0.183 4.183 22 C -0.156 4.156 23 C -0.203 4.203 24 H 0.029 0.971 25 H 0.073 0.927 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.029 0.971 30 H 0.043 0.957 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.105 0.895 35 H 0.398 0.602 36 H 0.029 0.971 37 H 0.034 0.966 38 H 0.259 0.741 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.637 12.083 1.763 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.278 5.278 3 C -0.123 4.123 4 C -0.029 4.029 5 C -0.036 4.036 6 C -0.194 4.194 7 C -0.092 4.092 8 C -0.247 4.247 9 C 0.103 3.897 10 N -0.353 5.353 11 C 0.063 3.937 12 C 0.007 3.993 13 C -0.541 4.541 14 H 0.071 0.929 15 C -0.172 4.172 16 N -0.542 5.542 17 Si 0.771 3.229 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.208 1.208 21 C -0.220 4.220 22 C -0.195 4.195 23 C -0.227 4.227 24 H 0.047 0.953 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.153 0.847 33 H 0.155 0.845 34 H 0.123 0.877 35 H 0.232 0.768 36 H 0.047 0.953 37 H 0.052 0.948 38 H 0.068 0.932 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.666 11.485 1.201 17.140 hybrid contribution -1.823 0.339 0.273 1.874 sum 10.843 11.824 1.474 16.110 Atomic orbital electron populations 1.22423 0.87524 1.02029 1.00641 1.61968 1.08142 1.14769 1.42964 1.22447 1.01376 0.87490 1.00979 1.21066 1.01117 0.89020 0.91649 1.19567 0.93114 0.95339 0.95584 1.20864 1.01520 0.93096 1.03950 1.21069 0.95115 0.96086 0.96905 1.20764 0.97483 0.99428 1.07033 1.18163 0.86354 0.93042 0.92112 1.44691 1.19274 1.09980 1.61316 1.20519 0.94063 0.80933 0.98177 1.19057 0.92964 0.96761 0.90548 1.20626 1.13063 1.05578 1.14849 0.92868 1.25604 0.99456 0.94979 0.97149 1.70075 1.41865 1.22228 1.20068 0.85713 0.80521 0.78618 0.78023 1.19190 1.21160 1.20783 1.22980 1.01277 1.03729 0.93997 1.22426 0.99997 0.91613 1.05418 1.20477 0.99749 0.93239 1.09204 0.95281 0.90864 0.92625 0.90143 0.90792 0.95225 0.93870 0.88284 0.84712 0.84536 0.87665 0.76810 0.95279 0.94753 0.93161 0.89412 0.90218 0.92037 0.90685 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.14 127.69 1.17 1.68 16 2 N -0.55 -12.18 5.01 -953.46 -4.78 -16.95 16 3 C 0.02 0.39 9.57 127.69 1.22 1.61 16 4 C 0.10 2.13 5.12 85.56 0.44 2.57 16 5 C -0.03 -0.95 4.88 -19.88 -0.10 -1.05 16 6 C -0.17 -4.62 9.70 22.29 0.22 -4.41 16 7 C -0.07 -2.13 10.04 22.25 0.22 -1.90 16 8 C -0.22 -7.86 9.31 22.40 0.21 -7.65 16 9 C 0.21 7.59 6.65 38.22 0.25 7.84 16 10 N -0.73 -28.79 5.65 -339.41 -1.92 -30.71 16 11 C 0.19 8.32 4.74 86.38 0.41 8.73 16 12 C 0.01 0.35 1.37 -52.93 -0.07 0.27 16 13 C -0.50 -26.40 8.66 25.60 0.22 -26.18 16 14 H 0.05 2.78 7.82 -2.91 -0.02 2.76 16 15 C 0.03 1.55 5.39 84.65 0.46 2.01 16 16 N -0.90 -50.91 12.92 21.45 0.28 -50.63 16 17 Si 0.94 43.06 29.55 68.60 2.03 45.08 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 19 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 C -0.18 -7.46 9.96 30.62 0.30 -7.15 16 22 C -0.16 -7.11 9.42 30.61 0.29 -6.82 16 23 C -0.20 -6.38 7.81 22.40 0.18 -6.20 16 24 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.07 1.54 8.12 -2.39 -0.02 1.52 16 26 H 0.05 1.58 6.17 -2.39 -0.01 1.56 16 27 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 28 H 0.07 1.07 8.12 -2.39 -0.02 1.05 16 29 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 30 H 0.04 0.90 8.06 -2.39 -0.02 0.88 16 31 H 0.10 1.75 8.01 -2.39 -0.02 1.73 16 32 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.11 3.89 6.73 -2.91 -0.02 3.87 16 35 H 0.40 15.49 8.41 -92.71 -0.78 14.71 16 36 H 0.03 1.48 7.92 -2.38 -0.02 1.46 16 37 H 0.03 1.44 7.93 -2.39 -0.02 1.42 16 38 H 0.26 14.04 8.32 -92.71 -0.77 13.27 16 39 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 40 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.07 3.19 8.14 -2.38 -0.02 3.17 16 43 H 0.12 3.43 8.03 -2.91 -0.02 3.40 16 Total: -1.00 -58.12 352.92 1.22 -56.90 By element: Atomic # 1 Polarization: 32.76 SS G_CDS: 0.19 Total: 32.96 kcal Atomic # 6 Polarization: -42.06 SS G_CDS: 5.41 Total: -36.65 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -6.42 Total: -98.29 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -58.12 1.22 -56.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601936604.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.926 kcal (2) G-P(sol) polarization free energy of solvation -58.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds