Wall clock time and date at job start Mon Mar 30 2020 01:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46757 * 2 1 4 4 C 1.53001 * 109.46812 * 240.00481 * 2 1 3 5 5 C 1.50704 * 109.47281 * 65.00019 * 4 2 1 6 6 H 1.07995 * 119.99829 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00033 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00014 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47187 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47422 * 119.99899 * 9 7 5 12 12 H 1.48505 * 109.46595 * 239.99646 * 9 7 5 13 13 C 1.52999 * 109.47025 * 120.00514 * 2 1 3 14 14 N 1.46897 * 109.47245 * 294.99859 * 13 2 1 15 15 C 1.47849 * 111.00095 * 286.41179 * 14 13 2 16 16 C 1.54905 * 104.79547 * 213.63515 * 15 14 13 17 17 C 1.55136 * 101.65514 * 37.07201 * 16 15 14 18 18 C 1.47438 * 111.00219 * 165.56988 * 14 13 2 19 19 H 1.08998 * 109.88766 * 242.66568 * 18 14 13 20 20 C 1.50704 * 109.88805 * 3.68836 * 18 14 13 21 21 C 1.38224 * 119.61965 * 247.22803 * 20 18 14 22 22 C 1.38629 * 119.16277 * 179.97438 * 21 20 18 23 23 C 1.38671 * 118.41975 * 359.97438 * 22 21 20 24 24 C 1.38185 * 119.16379 * 0.02562 * 23 22 21 25 25 N 1.31852 * 119.61534 * 66.95205 * 20 18 14 26 26 H 1.08995 * 109.47046 * 299.99578 * 1 2 3 27 27 H 1.09001 * 109.47145 * 59.99700 * 1 2 3 28 28 H 1.09003 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47212 * 304.99825 * 4 2 1 30 30 H 1.09005 * 109.46831 * 184.99796 * 4 2 1 31 31 H 0.97001 * 120.00295 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.47114 * 55.00263 * 13 2 1 33 33 H 1.09001 * 109.46703 * 174.99865 * 13 2 1 34 34 H 1.08999 * 110.37325 * 332.47003 * 15 14 13 35 35 H 1.09004 * 110.37370 * 94.80534 * 15 14 13 36 36 H 1.09004 * 110.98939 * 278.97699 * 16 15 14 37 37 H 1.08997 * 111.02026 * 155.18012 * 16 15 14 38 38 H 1.08998 * 110.70546 * 205.96979 * 17 16 15 39 39 H 1.08992 * 110.70864 * 82.72205 * 17 16 15 40 40 H 1.08001 * 120.42133 * 0.02562 * 21 20 18 41 41 H 1.07995 * 120.78702 * 179.97438 * 22 21 20 42 42 H 1.07995 * 120.41992 * 180.02562 * 23 22 21 43 43 H 1.07999 * 119.61656 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9931 -0.4014 -3.7284 8 7 2.6771 -1.5180 -3.8513 9 14 1.4995 0.5638 -5.2495 10 1 0.7420 1.7747 -4.8432 11 1 2.7178 0.9687 -5.9958 12 1 0.6458 -0.2852 -6.1189 13 6 2.0400 -0.7214 1.2492 14 7 1.6514 0.0372 2.4456 15 6 2.4683 1.2616 2.5852 16 6 2.6251 1.4604 4.1134 17 6 2.7590 -0.0039 4.6079 18 6 1.8145 -0.7773 3.6637 19 1 0.8472 -0.9230 4.1446 20 6 2.4176 -2.1125 3.3107 21 6 1.6634 -3.2620 3.4538 22 6 2.2274 -4.4852 3.1258 23 6 3.5346 -4.5064 2.6636 24 6 4.2270 -3.3163 2.5466 25 7 3.6567 -2.1701 2.8639 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7197 -1.2953 30 1 3.1263 -0.7994 -1.2057 31 1 2.9244 -1.8409 -4.7319 32 1 1.6054 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2054 34 1 3.4434 1.1224 2.1185 35 1 1.9530 2.1141 2.1425 36 1 1.7413 1.9367 4.5379 37 1 3.5232 2.0337 4.3430 38 1 2.4275 -0.0932 5.6424 39 1 3.7850 -0.3552 4.4990 40 1 0.6473 -3.2079 3.8157 41 1 1.6621 -5.3997 3.2278 42 1 4.0057 -5.4414 2.3984 43 1 5.2456 -3.3244 2.1878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602442769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:23 Heat of formation + Delta-G solvation = 31.155110 kcal Electronic energy + Delta-G solvation = -21739.852930 eV Core-core repulsion = 18784.448811 eV Total energy + Delta-G solvation = -2955.404120 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.70275 -38.36002 -35.19763 -32.46588 -32.38811 -31.93858 -30.42711 -28.05483 -26.73000 -25.28099 -23.62389 -23.15639 -22.66361 -21.10402 -19.94640 -18.73117 -16.91505 -16.38299 -16.17081 -15.64295 -15.36579 -14.72831 -14.44112 -14.25021 -14.09927 -13.30612 -13.18345 -12.82218 -12.73376 -12.64487 -12.05789 -12.01879 -11.58781 -11.29767 -11.20472 -11.07648 -10.91669 -10.79665 -10.69836 -10.52067 -10.22279 -10.16855 -9.72255 -9.55388 -9.36580 -9.06963 -8.93902 -8.82503 -8.27913 -7.89165 -5.92522 -3.93135 1.15953 1.34673 3.35021 3.42288 3.46932 3.80085 4.23057 4.43040 4.53994 4.66741 4.80811 4.87620 4.93646 5.13169 5.18085 5.26812 5.43223 5.50946 5.61431 5.68739 5.75843 5.79191 5.87647 5.95084 6.00308 6.11670 6.20563 6.22662 6.30177 6.32882 6.38513 6.49307 6.65675 6.77787 6.80882 7.10998 7.19299 7.29563 7.39071 7.54622 7.77345 7.93772 8.07487 8.08710 8.53477 9.13644 9.69866 11.19168 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.005228 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.635703 B = 5354.970117 C = 6307.510334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.079 4.079 3 H 0.054 0.946 4 C 0.030 3.970 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.057 3.943 14 N -0.509 5.509 15 C 0.044 3.956 16 C -0.127 4.127 17 C -0.130 4.130 18 C 0.119 3.881 19 H 0.094 0.906 20 C 0.125 3.875 21 C -0.167 4.167 22 C -0.075 4.075 23 C -0.178 4.178 24 C 0.104 3.896 25 N -0.473 5.473 26 H 0.042 0.958 27 H 0.052 0.948 28 H 0.035 0.965 29 H 0.012 0.988 30 H 0.011 0.989 31 H 0.258 0.742 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.132 0.868 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 -2.489 18.609 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.008 4.008 5 C -0.547 4.547 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.071 4.071 14 N -0.232 5.232 15 C -0.083 4.083 16 C -0.165 4.165 17 C -0.168 4.168 18 C 0.010 3.990 19 H 0.112 0.888 20 C -0.013 4.013 21 C -0.188 4.188 22 C -0.101 4.101 23 C -0.198 4.198 24 C -0.053 4.053 25 N -0.183 5.183 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.029 0.971 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.150 0.850 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.274 -1.683 18.319 18.398 hybrid contribution 0.160 -0.848 -0.972 1.300 sum 0.434 -2.531 17.347 17.536 Atomic orbital electron populations 1.21576 0.96019 1.00197 1.00094 1.21185 0.95709 0.99038 0.93885 0.92796 1.19093 0.95779 0.95351 0.90564 1.21288 1.34223 1.08198 0.90976 0.92540 1.25022 0.95408 0.95112 0.99064 1.69985 1.39312 1.21370 1.23127 0.86586 0.78224 0.80172 0.83344 1.19729 1.21132 1.21129 1.22661 0.98738 0.96284 0.89381 1.64007 1.52789 1.05102 1.01333 1.23062 0.96480 0.93581 0.95222 1.22683 1.01704 0.96123 0.95985 1.22807 1.00440 0.95239 0.98341 1.21534 0.97419 0.87645 0.92399 0.88821 1.21551 0.90127 0.95654 0.94000 1.21943 1.01172 0.93074 1.02580 1.21534 0.94988 0.98096 0.95465 1.22099 0.95814 1.00027 1.01822 1.22741 0.99921 0.87558 0.95112 1.67521 1.11390 1.29160 1.10237 0.93898 0.92892 0.94557 0.96984 0.97105 0.93252 0.92298 0.93277 0.93132 0.90294 0.90995 0.91118 0.91371 0.90299 0.84970 0.85064 0.85007 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 8.89 37.16 0.33 -2.18 16 2 C -0.08 -1.74 2.38 -90.62 -0.22 -1.96 16 3 H 0.05 1.21 7.53 -51.93 -0.39 0.82 16 4 C 0.03 0.80 4.45 -27.88 -0.12 0.68 16 5 C -0.51 -14.73 8.41 -34.44 -0.29 -15.02 16 6 H 0.06 1.60 7.05 -52.49 -0.37 1.23 16 7 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 9 Si 0.89 22.20 29.54 -169.99 -5.02 17.17 16 10 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 13 C 0.06 1.09 2.99 -3.83 -0.01 1.08 16 14 N -0.51 -8.15 4.58 -224.72 -1.03 -9.18 16 15 C 0.04 0.65 5.93 -2.30 -0.01 0.64 16 16 C -0.13 -1.46 7.08 -24.60 -0.17 -1.63 16 17 C -0.13 -1.53 6.42 -24.91 -0.16 -1.69 16 18 C 0.12 1.61 3.71 -67.87 -0.25 1.36 16 19 H 0.09 1.14 7.91 -51.93 -0.41 0.73 16 20 C 0.12 1.79 3.45 -82.59 -0.29 1.50 16 21 C -0.17 -2.10 9.49 -39.44 -0.37 -2.48 16 22 C -0.07 -0.86 10.18 -39.28 -0.40 -1.26 16 23 C -0.18 -2.09 10.11 -39.44 -0.40 -2.49 16 24 C 0.10 1.40 11.18 -17.55 -0.20 1.21 16 25 N -0.47 -7.27 7.44 -9.47 -0.07 -7.34 16 26 H 0.04 0.79 7.75 -51.93 -0.40 0.39 16 27 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 28 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.06 1.19 6.50 -51.93 -0.34 0.85 16 33 H 0.05 1.02 6.27 -51.93 -0.33 0.70 16 34 H 0.05 0.82 7.55 -51.93 -0.39 0.43 16 35 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 1.03 7.24 -51.93 -0.38 0.65 16 40 H 0.13 1.38 7.97 -52.49 -0.42 0.96 16 41 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 338.51 15.07 5.10 5.10 Total: -1.00 -32.10 338.51 -10.09 -42.19 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.15 Total: -0.25 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.66 Total: -20.75 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: -0.36 Total: -43.47 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.10 -10.09 -42.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602442769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.346 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds