Wall clock time and date at job start Mon Mar 30 2020 01:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46757 * 2 1 4 4 C 1.53001 * 109.46812 * 240.00481 * 2 1 3 5 5 C 1.50704 * 109.47281 * 65.00019 * 4 2 1 6 6 H 1.07995 * 119.99829 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00033 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00014 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47187 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47422 * 119.99899 * 9 7 5 12 12 H 1.48505 * 109.46595 * 239.99646 * 9 7 5 13 13 C 1.52999 * 109.47025 * 120.00514 * 2 1 3 14 14 N 1.46897 * 109.47245 * 294.99859 * 13 2 1 15 15 C 1.47849 * 111.00095 * 286.41179 * 14 13 2 16 16 C 1.54905 * 104.79547 * 213.63515 * 15 14 13 17 17 C 1.55136 * 101.65514 * 37.07201 * 16 15 14 18 18 C 1.47438 * 111.00219 * 165.56988 * 14 13 2 19 19 H 1.08998 * 109.88766 * 242.66568 * 18 14 13 20 20 C 1.50704 * 109.88805 * 3.68836 * 18 14 13 21 21 C 1.38224 * 119.61965 * 247.22803 * 20 18 14 22 22 C 1.38629 * 119.16277 * 179.97438 * 21 20 18 23 23 C 1.38671 * 118.41975 * 359.97438 * 22 21 20 24 24 C 1.38185 * 119.16379 * 0.02562 * 23 22 21 25 25 N 1.31852 * 119.61534 * 66.95205 * 20 18 14 26 26 H 1.08995 * 109.47046 * 299.99578 * 1 2 3 27 27 H 1.09001 * 109.47145 * 59.99700 * 1 2 3 28 28 H 1.09003 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47212 * 304.99825 * 4 2 1 30 30 H 1.09005 * 109.46831 * 184.99796 * 4 2 1 31 31 H 0.97001 * 120.00295 * 179.97438 * 8 7 5 32 32 H 1.08994 * 109.47114 * 55.00263 * 13 2 1 33 33 H 1.09001 * 109.46703 * 174.99865 * 13 2 1 34 34 H 1.08999 * 110.37325 * 332.47003 * 15 14 13 35 35 H 1.09004 * 110.37370 * 94.80534 * 15 14 13 36 36 H 1.09004 * 110.98939 * 278.97699 * 16 15 14 37 37 H 1.08997 * 111.02026 * 155.18012 * 16 15 14 38 38 H 1.08998 * 110.70546 * 205.96979 * 17 16 15 39 39 H 1.08992 * 110.70864 * 82.72205 * 17 16 15 40 40 H 1.08001 * 120.42133 * 0.02562 * 21 20 18 41 41 H 1.07995 * 120.78702 * 179.97438 * 22 21 20 42 42 H 1.07995 * 120.41992 * 180.02562 * 23 22 21 43 43 H 1.07999 * 119.61656 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4766 6 1 1.0799 0.9743 -2.3757 7 6 1.9931 -0.4014 -3.7284 8 7 2.6771 -1.5180 -3.8513 9 14 1.4995 0.5638 -5.2495 10 1 0.7420 1.7747 -4.8432 11 1 2.7178 0.9687 -5.9958 12 1 0.6458 -0.2852 -6.1189 13 6 2.0400 -0.7214 1.2492 14 7 1.6514 0.0372 2.4456 15 6 2.4683 1.2616 2.5852 16 6 2.6251 1.4604 4.1134 17 6 2.7590 -0.0039 4.6079 18 6 1.8145 -0.7773 3.6637 19 1 0.8472 -0.9230 4.1446 20 6 2.4176 -2.1125 3.3107 21 6 1.6634 -3.2620 3.4538 22 6 2.2274 -4.4852 3.1258 23 6 3.5346 -4.5064 2.6636 24 6 4.2270 -3.3163 2.5466 25 7 3.6567 -2.1701 2.8639 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.6053 -1.7197 -1.2953 30 1 3.1263 -0.7994 -1.2057 31 1 2.9244 -1.8409 -4.7319 32 1 1.6054 -1.7199 1.2950 33 1 3.1263 -0.7996 1.2054 34 1 3.4434 1.1224 2.1185 35 1 1.9530 2.1141 2.1425 36 1 1.7413 1.9367 4.5379 37 1 3.5232 2.0337 4.3430 38 1 2.4275 -0.0932 5.6424 39 1 3.7850 -0.3552 4.4990 40 1 0.6473 -3.2079 3.8157 41 1 1.6621 -5.3997 3.2278 42 1 4.0057 -5.4414 2.3984 43 1 5.2456 -3.3244 2.1878 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602442769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:22 Heat of formation + Delta-G solvation = 12.246407 kcal Electronic energy + Delta-G solvation = -21740.672873 eV Core-core repulsion = 18784.448811 eV Total energy + Delta-G solvation = -2956.224062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.75724 -39.50425 -36.98508 -34.48437 -33.41182 -32.94092 -31.88789 -29.09330 -28.79246 -26.87937 -24.92743 -24.41295 -24.07535 -22.27936 -21.12353 -20.39652 -18.58312 -17.81336 -17.38796 -16.74731 -16.59044 -16.32831 -15.85198 -15.78080 -15.32657 -14.57668 -14.41984 -14.28748 -14.21820 -13.99595 -13.60855 -13.25829 -13.07651 -12.93168 -12.79242 -12.58180 -12.37300 -12.22799 -12.15112 -11.97462 -11.90454 -11.58714 -11.42441 -11.11981 -10.91444 -10.70191 -10.56901 -10.39135 -9.94162 -9.18448 -8.19614 -6.29628 0.17780 0.39393 1.38203 1.38633 1.52370 2.40282 2.77785 3.13072 3.13521 3.33062 3.72612 3.79672 3.84479 4.04842 4.14800 4.23191 4.26623 4.31195 4.41716 4.50714 4.56946 4.63445 4.70637 4.80789 4.82394 4.92005 4.96653 4.99087 5.03508 5.09527 5.16194 5.22945 5.27059 5.28460 5.41089 5.44983 5.46651 5.53933 5.75837 5.81286 5.84965 6.08720 6.11221 6.29103 6.85853 7.07477 7.38871 8.93030 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.005228 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.635703 B = 5354.970117 C = 6307.510334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.072 4.072 3 H 0.048 0.952 4 C 0.040 3.960 5 C -0.528 4.528 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.964 3.036 10 H -0.261 1.261 11 H -0.279 1.279 12 H -0.277 1.277 13 C 0.083 3.917 14 N -0.510 5.510 15 C 0.038 3.962 16 C -0.114 4.114 17 C -0.123 4.123 18 C 0.114 3.886 19 H 0.115 0.885 20 C 0.102 3.898 21 C -0.173 4.173 22 C -0.078 4.078 23 C -0.178 4.178 24 C 0.078 3.922 25 N -0.504 5.504 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.032 0.968 29 H -0.017 1.017 30 H -0.024 1.024 31 H 0.262 0.738 32 H 0.047 0.953 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.158 0.842 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 -1.994 19.722 19.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.091 4.091 3 H 0.066 0.934 4 C 0.003 3.997 5 C -0.566 4.566 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.789 3.211 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.203 1.203 13 C -0.046 4.046 14 N -0.233 5.233 15 C -0.089 4.089 16 C -0.152 4.152 17 C -0.162 4.162 18 C 0.006 3.994 19 H 0.132 0.868 20 C -0.036 4.036 21 C -0.193 4.193 22 C -0.104 4.104 23 C -0.197 4.197 24 C -0.079 4.079 25 N -0.214 5.214 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.001 0.999 30 H -0.006 1.006 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.113 0.887 39 H 0.079 0.921 40 H 0.172 0.828 41 H 0.181 0.819 42 H 0.175 0.825 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -1.232 -1.181 19.454 19.528 hybrid contribution 0.675 -1.071 -1.296 1.812 sum -0.557 -2.253 18.158 18.306 Atomic orbital electron populations 1.21448 0.94433 1.00120 1.00641 1.21017 0.96860 0.98154 0.93072 0.93362 1.18930 0.93384 0.94363 0.93053 1.21637 1.34427 1.08544 0.91958 0.92065 1.25997 0.95142 0.96122 1.02761 1.70125 1.40290 1.23088 1.24247 0.85408 0.78128 0.78891 0.78707 1.18461 1.20434 1.20294 1.22179 0.96897 0.95631 0.89855 1.63946 1.52758 1.05446 1.01158 1.23117 0.95003 0.92977 0.97852 1.22655 1.03227 0.96307 0.93043 1.22767 0.99139 0.94855 0.99402 1.21723 0.98883 0.87367 0.91450 0.86760 1.21743 0.90225 0.96623 0.94962 1.22271 1.02034 0.92944 1.02083 1.21972 0.94990 0.99052 0.94387 1.22429 0.96142 1.00360 1.00819 1.23058 1.00789 0.88111 0.95964 1.67454 1.12430 1.30302 1.11203 0.91253 0.94250 0.94901 0.99881 1.00584 0.92911 0.93409 0.95641 0.95594 0.90327 0.89091 0.89805 0.88654 0.92065 0.82753 0.81941 0.82460 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 8.89 71.98 0.64 -3.83 16 2 C -0.07 -3.25 2.38 -10.79 -0.03 -3.28 16 3 H 0.05 2.22 7.53 -2.39 -0.02 2.20 16 4 C 0.04 2.28 4.45 29.85 0.13 2.41 16 5 C -0.53 -31.26 8.41 25.60 0.22 -31.04 16 6 H 0.06 3.50 7.05 -2.91 -0.02 3.48 16 7 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 8 N -0.94 -59.13 13.29 21.45 0.28 -58.85 16 9 Si 0.96 45.73 29.54 68.60 2.03 47.76 16 10 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 13 C 0.08 3.27 2.99 86.30 0.26 3.53 16 14 N -0.51 -16.03 4.58 -864.90 -3.96 -20.00 16 15 C 0.04 1.11 5.93 86.77 0.51 1.63 16 16 C -0.11 -2.39 7.08 31.98 0.23 -2.17 16 17 C -0.12 -2.68 6.42 31.78 0.20 -2.48 16 18 C 0.11 2.94 3.71 44.52 0.17 3.11 16 19 H 0.11 2.47 7.91 -2.39 -0.02 2.45 16 20 C 0.10 2.89 3.45 42.55 0.15 3.04 16 21 C -0.17 -4.11 9.49 22.36 0.21 -3.90 16 22 C -0.08 -1.67 10.18 22.47 0.23 -1.44 16 23 C -0.18 -4.06 10.11 22.36 0.23 -3.84 16 24 C 0.08 2.16 11.18 84.67 0.95 3.11 16 25 N -0.50 -15.95 7.44 -183.88 -1.37 -17.32 16 26 H 0.07 2.46 7.75 -2.39 -0.02 2.44 16 27 H 0.04 1.69 6.95 -2.39 -0.02 1.68 16 28 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 29 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 30 H -0.02 -1.51 8.14 -2.38 -0.02 -1.53 16 31 H 0.26 15.46 8.31 -92.71 -0.77 14.68 16 32 H 0.05 1.98 6.50 -2.39 -0.02 1.96 16 33 H 0.03 1.13 6.27 -2.39 -0.01 1.11 16 34 H 0.03 0.87 7.55 -2.39 -0.02 0.85 16 35 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.57 7.24 -2.39 -0.02 1.55 16 40 H 0.15 2.84 7.97 -2.91 -0.02 2.81 16 41 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 42 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.16 3.92 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -71.36 338.51 2.49 -68.87 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.96 Total: 14.43 kcal Atomic # 6 Polarization: -39.44 SS G_CDS: 4.55 Total: -34.89 kcal Atomic # 7 Polarization: -91.12 SS G_CDS: -5.05 Total: -96.17 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -71.36 2.49 -68.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602442769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.116 kcal (2) G-P(sol) polarization free energy of solvation -71.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds