Wall clock time and date at job start Mon Mar 30 2020 01:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46999 * 2 1 4 4 C 1.52999 * 109.46752 * 239.99959 * 2 1 3 5 5 C 1.50699 * 109.47059 * 65.00464 * 4 2 1 6 6 H 1.07993 * 120.00086 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99969 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99844 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00259 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47287 * 90.00106 * 9 7 5 11 11 H 1.48502 * 109.47186 * 210.00079 * 9 7 5 12 12 H 1.48502 * 109.47107 * 329.99699 * 9 7 5 13 13 C 1.53001 * 109.46713 * 120.00111 * 2 1 3 14 14 N 1.46900 * 109.46778 * 185.33408 * 13 2 1 15 15 C 1.47445 * 110.99784 * 75.31494 * 14 13 2 16 16 C 1.54320 * 107.23680 * 123.25463 * 15 14 13 17 17 C 1.55141 * 103.01458 * 22.28374 * 16 15 14 18 18 C 1.47845 * 110.99807 * 196.15351 * 14 13 2 19 19 H 1.08996 * 110.37565 * 332.46504 * 18 14 13 20 20 C 1.50697 * 110.37347 * 94.80888 * 18 14 13 21 21 C 1.38656 * 120.78777 * 39.72133 * 20 18 14 22 22 C 1.38198 * 119.15960 * 179.75522 * 21 20 18 23 23 N 1.31869 * 120.76900 * 0.52861 * 22 21 20 24 24 C 1.31876 * 121.72417 * 359.74102 * 23 22 21 25 25 C 1.38203 * 120.76150 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47679 * 174.93701 * 1 2 3 27 27 H 1.08997 * 109.47479 * 294.94244 * 1 2 3 28 28 H 1.09009 * 109.47070 * 54.93941 * 1 2 3 29 29 H 1.09000 * 109.46511 * 185.00017 * 4 2 1 30 30 H 1.09002 * 109.47576 * 304.99696 * 4 2 1 31 31 H 0.96998 * 119.99988 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47424 * 305.33945 * 13 2 1 33 33 H 1.09004 * 109.46900 * 65.33771 * 13 2 1 34 34 H 1.08998 * 109.88560 * 242.66464 * 15 14 13 35 35 H 1.09000 * 109.88811 * 3.68340 * 15 14 13 36 36 H 1.08996 * 110.70232 * 140.66266 * 16 15 14 37 37 H 1.08993 * 110.70238 * 263.72998 * 16 15 14 38 38 H 1.09000 * 110.99302 * 82.43637 * 17 16 15 39 39 H 1.09002 * 110.99179 * 206.25512 * 17 16 15 40 40 H 1.08001 * 120.41661 * 359.97438 * 21 20 18 41 41 H 1.08009 * 119.61784 * 180.29117 * 22 21 20 42 42 H 1.07995 * 119.61843 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.42059 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0801 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6771 -1.5183 -3.8511 9 14 1.4997 0.5635 -5.2495 10 1 2.5653 1.5429 -5.5817 11 1 1.3130 -0.3702 -6.3891 12 1 0.2285 1.2849 -4.9873 13 6 2.0399 -0.7213 1.2493 14 7 3.5033 -0.6108 1.3154 15 6 3.9124 0.7402 1.7412 16 6 4.7898 0.5768 3.0001 17 6 5.2958 -0.8853 2.8860 18 6 4.0665 -1.5943 2.2648 19 1 3.3372 -1.8361 3.0379 20 6 4.4934 -2.8422 1.5358 21 6 5.1116 -2.7642 0.2972 22 6 5.4938 -3.9299 -0.3392 23 7 5.2673 -5.1056 0.2134 24 6 4.6770 -5.2180 1.3873 25 6 4.2723 -4.0959 2.0852 26 1 -0.3634 -1.0236 -0.0907 27 1 -0.3634 0.4334 0.9318 28 1 -0.3634 0.5904 -0.8413 29 1 3.1263 -0.7995 -1.2056 30 1 1.6054 -1.7199 -1.2952 31 1 2.9250 -1.8409 -4.7316 32 1 1.6006 -0.2657 2.1367 33 1 1.7567 -1.7729 1.2027 34 1 4.4864 1.2207 0.9489 35 1 3.0315 1.3379 1.9752 36 1 5.6254 1.2764 2.9808 37 1 4.1960 0.7125 3.9039 38 1 6.1592 -0.9491 2.2237 39 1 5.5281 -1.2959 3.8686 40 1 5.2953 -1.8045 -0.1628 41 1 5.9802 -3.8776 -1.3021 42 1 4.5087 -6.1981 1.8084 43 1 3.7897 -4.1943 3.0464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602658135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:51 Heat of formation + Delta-G solvation = 23.393637 kcal Electronic energy + Delta-G solvation = -21743.651609 eV Core-core repulsion = 18787.910926 eV Total energy + Delta-G solvation = -2955.740682 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13199 -38.63182 -35.31736 -32.76781 -32.31740 -30.82162 -30.61165 -28.18552 -26.93849 -25.15150 -23.29325 -23.06728 -22.56073 -21.13738 -20.08653 -18.61781 -16.81320 -16.40313 -16.10272 -15.36267 -15.23345 -14.87549 -14.43797 -13.70779 -13.66873 -13.45502 -13.33184 -12.99610 -12.77378 -12.56167 -12.23672 -11.87603 -11.51719 -11.40732 -11.31872 -11.09678 -10.97935 -10.84878 -10.79583 -10.60330 -10.32169 -10.17254 -9.64333 -9.21641 -9.11038 -9.06017 -8.83422 -8.73941 -8.22202 -7.92018 -5.86718 -3.87192 1.50240 1.61696 3.37152 3.43844 3.46321 4.04402 4.24915 4.54861 4.62134 4.77147 4.81714 4.99074 5.10643 5.12186 5.37984 5.44200 5.48408 5.53889 5.59629 5.65137 5.72751 5.78237 5.86256 5.94499 6.01384 6.07034 6.09548 6.20455 6.25592 6.31751 6.35718 6.39930 6.51381 6.72078 6.97887 7.04873 7.09184 7.28318 7.35584 7.51882 7.86794 8.08304 8.21446 8.32954 8.58908 9.20251 9.74815 11.23976 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.006204 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.636767 B = 4512.032860 C = 5609.260290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.040 3.960 5 C -0.514 4.514 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.892 5.892 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.062 3.938 14 N -0.509 5.509 15 C 0.045 3.955 16 C -0.141 4.141 17 C -0.117 4.117 18 C 0.109 3.891 19 H 0.060 0.940 20 C -0.026 4.026 21 C -0.122 4.122 22 C 0.098 3.902 23 N -0.491 5.491 24 C 0.087 3.913 25 C -0.177 4.177 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.061 0.939 29 H 0.032 0.968 30 H 0.006 0.994 31 H 0.257 0.743 32 H 0.021 0.979 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.143 0.857 41 H 0.154 0.846 42 H 0.148 0.852 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.700 -0.330 15.589 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 H 0.073 0.927 4 C 0.003 3.997 5 C -0.552 4.552 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.532 5.532 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.066 4.066 14 N -0.232 5.232 15 C -0.082 4.082 16 C -0.180 4.180 17 C -0.155 4.155 18 C 0.000 4.000 19 H 0.078 0.922 20 C -0.035 4.035 21 C -0.142 4.142 22 C -0.058 4.058 23 N -0.201 5.201 24 C -0.071 4.071 25 C -0.197 4.197 26 H 0.064 0.936 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.050 0.950 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.161 0.839 41 H 0.171 0.829 42 H 0.165 0.835 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.203 -1.290 14.505 15.464 hybrid contribution -1.054 1.391 0.218 1.759 sum 4.149 0.102 14.723 15.297 Atomic orbital electron populations 1.21701 0.96545 1.01161 0.99581 1.21202 0.94069 0.99200 0.95597 0.92657 1.19003 0.97279 0.94272 0.89163 1.21304 1.34356 1.08129 0.91415 0.93121 1.24975 0.95544 0.95047 0.98771 1.69976 1.39097 1.21070 1.23032 0.86740 0.78800 0.79908 0.83373 1.20876 1.21425 1.20132 1.22446 0.85775 1.00800 0.97584 1.63347 1.11050 1.02317 1.46501 1.22834 0.98619 0.90966 0.95819 1.22809 0.99890 0.96814 0.98459 1.22716 0.97517 0.94694 1.00592 1.21411 0.95781 0.90734 0.92054 0.92166 1.20064 0.95043 0.93700 0.94701 1.22050 0.96978 1.00722 0.94401 1.22797 0.96373 0.87494 0.99126 1.67621 1.13123 1.28348 1.10983 1.22552 0.95234 0.98206 0.91062 1.21905 1.03086 0.93190 1.01561 0.93606 0.95421 0.91997 0.94960 0.97576 0.93309 0.96092 0.91750 0.90223 0.92618 0.90786 0.91789 0.90311 0.91033 0.83873 0.82881 0.83511 0.85730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.92 37.16 0.33 -2.17 16 2 C -0.08 -1.66 2.38 -90.62 -0.22 -1.87 16 3 H 0.05 1.14 7.44 -51.93 -0.39 0.75 16 4 C 0.04 1.02 4.39 -27.88 -0.12 0.90 16 5 C -0.51 -14.42 8.47 -34.44 -0.29 -14.72 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.90 13.29 55.43 0.74 -26.17 16 9 Si 0.88 21.92 29.54 -169.99 -5.02 16.90 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 C 0.06 1.05 3.97 -3.82 -0.02 1.04 16 14 N -0.51 -8.06 3.54 -224.75 -0.79 -8.86 16 15 C 0.05 0.62 6.22 -2.83 -0.02 0.60 16 16 C -0.14 -1.50 6.94 -24.91 -0.17 -1.67 16 17 C -0.12 -1.30 6.47 -24.59 -0.16 -1.46 16 18 C 0.11 1.47 2.57 -67.34 -0.17 1.30 16 19 H 0.06 0.77 7.73 -51.93 -0.40 0.37 16 20 C -0.03 -0.39 5.05 -104.32 -0.53 -0.92 16 21 C -0.12 -2.03 9.32 -39.44 -0.37 -2.40 16 22 C 0.10 1.66 11.18 -17.55 -0.20 1.46 16 23 N -0.49 -8.29 10.36 -13.25 -0.14 -8.43 16 24 C 0.09 1.24 11.18 -17.55 -0.20 1.04 16 25 C -0.18 -2.40 9.79 -39.44 -0.39 -2.78 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.06 1.25 7.10 -51.92 -0.37 0.88 16 29 H 0.03 0.88 7.63 -51.93 -0.40 0.48 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.02 0.32 7.79 -51.93 -0.40 -0.08 16 33 H 0.06 1.17 8.00 -51.93 -0.42 0.76 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.06 0.75 7.18 -51.93 -0.37 0.38 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.92 7.95 -51.93 -0.41 0.51 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.14 2.53 7.83 -52.49 -0.41 2.12 16 41 H 0.15 2.40 8.06 -52.48 -0.42 1.97 16 42 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 345.55 15.07 5.21 5.21 Total: -1.00 -31.08 345.55 -9.92 -41.00 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -7.30 Total: 0.45 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -2.61 Total: -20.10 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.20 Total: -43.45 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.08 -9.92 -41.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602658135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.395 kcal (2) G-P(sol) polarization free energy of solvation -31.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds