Wall clock time and date at job start Mon Mar 30 2020 01:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46999 * 2 1 4 4 C 1.52999 * 109.46752 * 239.99959 * 2 1 3 5 5 C 1.50699 * 109.47059 * 65.00464 * 4 2 1 6 6 H 1.07993 * 120.00086 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99969 * 179.97438 * 5 4 2 8 8 N 1.31522 * 119.99844 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00259 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47287 * 90.00106 * 9 7 5 11 11 H 1.48502 * 109.47186 * 210.00079 * 9 7 5 12 12 H 1.48502 * 109.47107 * 329.99699 * 9 7 5 13 13 C 1.53001 * 109.46713 * 120.00111 * 2 1 3 14 14 N 1.46900 * 109.46778 * 185.33408 * 13 2 1 15 15 C 1.47445 * 110.99784 * 75.31494 * 14 13 2 16 16 C 1.54320 * 107.23680 * 123.25463 * 15 14 13 17 17 C 1.55141 * 103.01458 * 22.28374 * 16 15 14 18 18 C 1.47845 * 110.99807 * 196.15351 * 14 13 2 19 19 H 1.08996 * 110.37565 * 332.46504 * 18 14 13 20 20 C 1.50697 * 110.37347 * 94.80888 * 18 14 13 21 21 C 1.38656 * 120.78777 * 39.72133 * 20 18 14 22 22 C 1.38198 * 119.15960 * 179.75522 * 21 20 18 23 23 N 1.31869 * 120.76900 * 0.52861 * 22 21 20 24 24 C 1.31876 * 121.72417 * 359.74102 * 23 22 21 25 25 C 1.38203 * 120.76150 * 359.97438 * 24 23 22 26 26 H 1.08999 * 109.47679 * 174.93701 * 1 2 3 27 27 H 1.08997 * 109.47479 * 294.94244 * 1 2 3 28 28 H 1.09009 * 109.47070 * 54.93941 * 1 2 3 29 29 H 1.09000 * 109.46511 * 185.00017 * 4 2 1 30 30 H 1.09002 * 109.47576 * 304.99696 * 4 2 1 31 31 H 0.96998 * 119.99988 * 180.02562 * 8 7 5 32 32 H 1.08996 * 109.47424 * 305.33945 * 13 2 1 33 33 H 1.09004 * 109.46900 * 65.33771 * 13 2 1 34 34 H 1.08998 * 109.88560 * 242.66464 * 15 14 13 35 35 H 1.09000 * 109.88811 * 3.68340 * 15 14 13 36 36 H 1.08996 * 110.70232 * 140.66266 * 16 15 14 37 37 H 1.08993 * 110.70238 * 263.72998 * 16 15 14 38 38 H 1.09000 * 110.99302 * 82.43637 * 17 16 15 39 39 H 1.09002 * 110.99179 * 206.25512 * 17 16 15 40 40 H 1.08001 * 120.41661 * 359.97438 * 21 20 18 41 41 H 1.08009 * 119.61784 * 180.29117 * 22 21 20 42 42 H 1.07995 * 119.61843 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.42059 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0801 0.9742 -2.3757 7 6 1.9932 -0.4016 -3.7283 8 7 2.6771 -1.5183 -3.8511 9 14 1.4997 0.5635 -5.2495 10 1 2.5653 1.5429 -5.5817 11 1 1.3130 -0.3702 -6.3891 12 1 0.2285 1.2849 -4.9873 13 6 2.0399 -0.7213 1.2493 14 7 3.5033 -0.6108 1.3154 15 6 3.9124 0.7402 1.7412 16 6 4.7898 0.5768 3.0001 17 6 5.2958 -0.8853 2.8860 18 6 4.0665 -1.5943 2.2648 19 1 3.3372 -1.8361 3.0379 20 6 4.4934 -2.8422 1.5358 21 6 5.1116 -2.7642 0.2972 22 6 5.4938 -3.9299 -0.3392 23 7 5.2673 -5.1056 0.2134 24 6 4.6770 -5.2180 1.3873 25 6 4.2723 -4.0959 2.0852 26 1 -0.3634 -1.0236 -0.0907 27 1 -0.3634 0.4334 0.9318 28 1 -0.3634 0.5904 -0.8413 29 1 3.1263 -0.7995 -1.2056 30 1 1.6054 -1.7199 -1.2952 31 1 2.9250 -1.8409 -4.7316 32 1 1.6006 -0.2657 2.1367 33 1 1.7567 -1.7729 1.2027 34 1 4.4864 1.2207 0.9489 35 1 3.0315 1.3379 1.9752 36 1 5.6254 1.2764 2.9808 37 1 4.1960 0.7125 3.9039 38 1 6.1592 -0.9491 2.2237 39 1 5.5281 -1.2959 3.8686 40 1 5.2953 -1.8045 -0.1628 41 1 5.9802 -3.8776 -1.3021 42 1 4.5087 -6.1981 1.8084 43 1 3.7897 -4.1943 3.0464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602658135.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:50 Heat of formation + Delta-G solvation = 5.895924 kcal Electronic energy + Delta-G solvation = -21744.410366 eV Core-core repulsion = 18787.910926 eV Total energy + Delta-G solvation = -2956.499440 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29195 -39.80875 -36.94900 -34.46265 -33.81738 -32.01351 -31.92234 -29.25620 -28.95202 -26.53240 -24.86954 -24.45062 -23.93041 -22.22778 -21.21518 -20.20530 -18.50375 -17.82796 -17.46800 -16.61779 -16.51208 -16.36413 -15.96363 -15.22470 -14.95255 -14.75218 -14.51210 -14.24936 -14.15020 -13.88416 -13.80453 -13.47788 -13.14680 -12.80849 -12.66936 -12.58683 -12.40765 -12.28714 -12.15947 -12.00494 -11.88577 -11.56514 -11.43774 -10.94653 -10.89636 -10.45719 -10.38589 -10.29330 -9.95832 -9.10036 -8.09856 -6.18400 0.30973 0.41785 1.39027 1.39736 1.50084 2.44322 2.87216 3.09131 3.22512 3.60757 3.67171 3.80076 3.99630 4.02777 4.12923 4.20203 4.32718 4.33721 4.38947 4.44802 4.56322 4.64508 4.72152 4.81427 4.83080 4.87922 4.94840 4.97561 4.99399 5.06919 5.12174 5.22673 5.30215 5.37537 5.42793 5.51370 5.53207 5.67128 5.89628 5.95204 6.04619 6.21226 6.30752 6.39627 6.99991 7.11482 7.48458 9.00698 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014552 B = 0.006204 C = 0.004991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.636767 B = 4512.032860 C = 5609.260290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.076 4.076 3 H 0.052 0.948 4 C 0.055 3.945 5 C -0.529 4.529 6 H 0.055 0.945 7 C 0.000 4.000 8 N -0.929 5.929 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.074 3.926 14 N -0.537 5.537 15 C 0.042 3.958 16 C -0.128 4.128 17 C -0.111 4.111 18 C 0.109 3.891 19 H 0.080 0.920 20 C -0.031 4.031 21 C -0.140 4.140 22 C 0.076 3.924 23 N -0.516 5.516 24 C 0.082 3.918 25 C -0.169 4.169 26 H 0.037 0.963 27 H 0.066 0.934 28 H 0.043 0.957 29 H 0.004 0.996 30 H -0.032 1.032 31 H 0.258 0.742 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.099 0.901 40 H 0.120 0.880 41 H 0.149 0.851 42 H 0.182 0.818 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 0.488 18.152 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.095 4.095 3 H 0.071 0.929 4 C 0.018 3.982 5 C -0.567 4.567 6 H 0.073 0.927 7 C -0.197 4.197 8 N -0.570 5.570 9 Si 0.778 3.222 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.189 1.189 13 C -0.054 4.054 14 N -0.261 5.261 15 C -0.085 4.085 16 C -0.166 4.166 17 C -0.149 4.149 18 C 0.001 3.999 19 H 0.098 0.902 20 C -0.040 4.040 21 C -0.160 4.160 22 C -0.079 4.079 23 N -0.226 5.226 24 C -0.075 4.075 25 C -0.189 4.189 26 H 0.056 0.944 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.022 0.978 30 H -0.014 1.014 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.138 0.862 41 H 0.166 0.834 42 H 0.199 0.801 43 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.309 -0.451 17.075 17.616 hybrid contribution -0.772 1.099 -0.570 1.459 sum 3.536 0.648 16.505 16.892 Atomic orbital electron populations 1.21625 0.95248 1.00687 1.00876 1.21058 0.95167 0.98533 0.94740 0.92943 1.18756 0.95253 0.92651 0.91511 1.21725 1.34033 1.08356 0.92581 0.92712 1.25868 0.95537 0.96036 1.02271 1.70131 1.40317 1.22797 1.23735 0.85640 0.78922 0.78494 0.79139 1.20043 1.21230 1.18915 1.22196 0.86929 0.99519 0.96766 1.63173 1.10296 1.04021 1.48653 1.22829 0.99154 0.89737 0.96805 1.22752 0.99886 0.96591 0.97385 1.22706 0.95891 0.94906 1.01367 1.21511 0.97084 0.89635 0.91671 0.90239 1.20379 0.94225 0.95427 0.93994 1.21917 0.98718 0.99564 0.95842 1.22803 0.97500 0.88069 0.99517 1.67626 1.14378 1.28043 1.12536 1.23204 0.93945 1.00211 0.90173 1.22284 1.01923 0.91984 1.02690 0.94397 0.91530 0.93776 0.97767 1.01399 0.93364 0.93095 0.93183 0.92349 0.92196 0.89470 0.89708 0.91687 0.88295 0.86176 0.83396 0.80130 0.81899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.92 71.98 0.64 -4.02 16 2 C -0.08 -3.09 2.38 -10.79 -0.03 -3.11 16 3 H 0.05 2.15 7.44 -2.39 -0.02 2.13 16 4 C 0.06 2.96 4.39 29.85 0.13 3.09 16 5 C -0.53 -30.47 8.47 25.60 0.22 -30.26 16 6 H 0.05 3.04 7.06 -2.91 -0.02 3.02 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 9 Si 0.95 45.66 29.54 68.60 2.03 47.68 16 10 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 13 C 0.07 2.44 3.97 86.30 0.34 2.78 16 14 N -0.54 -16.78 3.54 -864.98 -3.06 -19.84 16 15 C 0.04 1.10 6.22 86.65 0.54 1.64 16 16 C -0.13 -2.33 6.94 31.78 0.22 -2.11 16 17 C -0.11 -2.19 6.47 31.98 0.21 -1.98 16 18 C 0.11 2.74 2.57 44.64 0.11 2.86 16 19 H 0.08 1.73 7.73 -2.39 -0.02 1.71 16 20 C -0.03 -0.92 5.05 -19.67 -0.10 -1.02 16 21 C -0.14 -4.98 9.32 22.36 0.21 -4.77 16 22 C 0.08 2.77 11.18 84.68 0.95 3.71 16 23 N -0.52 -17.77 10.36 -195.84 -2.03 -19.80 16 24 C 0.08 2.23 11.18 84.68 0.95 3.17 16 25 C -0.17 -4.21 9.79 22.36 0.22 -3.99 16 26 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.04 1.75 7.10 -2.38 -0.02 1.73 16 29 H 0.00 0.23 7.63 -2.39 -0.02 0.21 16 30 H -0.03 -1.96 8.14 -2.39 -0.02 -1.97 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.05 1.39 7.79 -2.39 -0.02 1.37 16 33 H 0.05 1.78 8.00 -2.38 -0.02 1.76 16 34 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.06 1.50 7.18 -2.39 -0.02 1.48 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.47 7.95 -2.39 -0.02 1.45 16 39 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.12 4.71 7.83 -2.91 -0.02 4.69 16 41 H 0.15 5.19 8.06 -2.91 -0.02 5.17 16 42 H 0.18 3.54 8.06 -2.91 -0.02 3.51 16 43 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.31 345.55 3.25 -67.06 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 0.96 Total: 16.35 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 5.07 Total: -33.54 kcal Atomic # 7 Polarization: -92.74 SS G_CDS: -4.80 Total: -97.55 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Total: -70.31 3.25 -67.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602658135.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.953 kcal (2) G-P(sol) polarization free energy of solvation -70.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds