Wall clock time and date at job start Mon Mar 30 2020 01:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47146 * 2 1 4 4 C 1.53002 * 109.47014 * 120.00175 * 2 1 3 5 5 C 1.50702 * 109.46770 * 295.00037 * 4 2 1 6 6 H 1.08001 * 120.00442 * 359.97438 * 5 4 2 7 7 C 1.37883 * 119.99857 * 180.02562 * 5 4 2 8 8 N 1.31517 * 119.99731 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00024 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47434 * 59.99794 * 9 7 5 11 11 H 1.48499 * 109.47207 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47394 * 299.99950 * 9 7 5 13 13 C 1.52997 * 109.46993 * 240.00026 * 2 1 3 14 14 N 1.46900 * 109.47150 * 64.99867 * 13 2 1 15 15 C 1.47843 * 110.99692 * 74.98588 * 14 13 2 16 16 C 1.54903 * 104.79608 * 146.36199 * 15 14 13 17 17 C 1.55140 * 101.65307 * 322.92837 * 16 15 14 18 18 C 1.47442 * 110.99849 * 195.82328 * 14 13 2 19 19 H 1.09005 * 109.89016 * 117.33733 * 18 14 13 20 20 C 1.50700 * 109.89206 * 356.31335 * 18 14 13 21 21 C 1.38648 * 120.78879 * 295.54197 * 20 18 14 22 22 C 1.38207 * 119.16547 * 179.79784 * 21 20 18 23 23 N 1.31873 * 120.75724 * 0.48033 * 22 21 20 24 24 C 1.31864 * 121.73244 * 359.74873 * 23 22 21 25 25 C 1.38204 * 120.76126 * 0.02562 * 24 23 22 26 26 H 1.09003 * 109.47613 * 299.99938 * 1 2 3 27 27 H 1.08998 * 109.47452 * 60.00428 * 1 2 3 28 28 H 1.09007 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47446 * 54.99633 * 4 2 1 30 30 H 1.08992 * 109.47311 * 175.00277 * 4 2 1 31 31 H 0.96999 * 119.99777 * 179.97438 * 8 7 5 32 32 H 1.09008 * 109.47185 * 304.99701 * 13 2 1 33 33 H 1.09000 * 109.46804 * 185.00207 * 13 2 1 34 34 H 1.08999 * 110.37488 * 265.19002 * 15 14 13 35 35 H 1.09000 * 110.37795 * 27.52899 * 15 14 13 36 36 H 1.09004 * 110.99568 * 81.02037 * 16 15 14 37 37 H 1.09003 * 110.99097 * 204.79550 * 16 15 14 38 38 H 1.09000 * 110.70553 * 277.26426 * 17 16 15 39 39 H 1.09000 * 110.70353 * 154.04148 * 17 16 15 40 40 H 1.07999 * 120.42227 * 359.97438 * 21 20 18 41 41 H 1.08000 * 119.62282 * 180.20583 * 22 21 20 42 42 H 1.08000 * 119.62092 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.41979 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 1 1.0806 0.9746 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5188 3.8511 9 14 1.4995 0.5633 5.2496 10 1 0.0196 0.6701 5.3095 11 1 1.9954 -0.1361 6.4620 12 1 2.0917 1.9237 5.1866 13 6 2.0400 -0.7212 -1.2492 14 7 1.6513 0.0374 -2.4456 15 6 2.4904 1.2444 -2.6033 16 6 2.6318 1.4306 -4.1346 17 6 2.7304 -0.0392 -4.6212 18 6 1.7829 -0.7878 -3.6604 19 1 0.8069 -0.9173 -4.1282 20 6 2.3639 -2.1325 -3.3064 21 6 3.6508 -2.2389 -2.8016 22 6 4.1486 -3.4885 -2.4842 23 7 3.4181 -4.5714 -2.6654 24 6 2.1923 -4.5085 -3.1475 25 6 1.6263 -3.2932 -3.4831 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.6054 -1.7198 1.2952 30 1 3.1262 -0.7995 1.2057 31 1 2.9242 -1.8413 4.7317 32 1 1.6053 -1.7199 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 1.9978 2.1097 -2.1598 35 1 3.4685 1.0888 -2.1480 36 1 1.7524 1.9216 -4.5512 37 1 3.5382 1.9849 -4.3785 38 1 3.7507 -0.4101 -4.5230 39 1 2.3844 -0.1283 -5.6509 40 1 4.2557 -1.3562 -2.6556 41 1 5.1489 -3.5797 -2.0874 42 1 1.6245 -5.4172 -3.2824 43 1 0.6218 -3.2480 -3.8772 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602658136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:54 Heat of formation + Delta-G solvation = 10.298150 kcal Electronic energy + Delta-G solvation = -21735.241165 eV Core-core repulsion = 18778.932620 eV Total energy + Delta-G solvation = -2956.308545 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84411 -39.71613 -37.01269 -34.48706 -33.96543 -32.20669 -31.91133 -29.30627 -28.79146 -26.92604 -25.01226 -24.32053 -24.15631 -22.28445 -21.15300 -20.40428 -18.58003 -17.73269 -17.50119 -16.80153 -16.54828 -16.30439 -16.01122 -15.83444 -15.21523 -14.60461 -14.56169 -14.41340 -14.34646 -14.09955 -13.65086 -13.27305 -13.12800 -12.82203 -12.72287 -12.61653 -12.48841 -12.23448 -12.20424 -11.97906 -11.93652 -11.57453 -11.41581 -11.13744 -10.92948 -10.56195 -10.54966 -10.36662 -10.05416 -9.23850 -8.18775 -6.28822 0.19726 0.25735 1.38511 1.41635 1.49407 2.40576 2.78403 3.11001 3.14263 3.45424 3.58952 3.67034 3.80775 3.93788 4.12193 4.12993 4.22562 4.24888 4.36360 4.49558 4.52814 4.59655 4.69143 4.79783 4.82169 4.84869 4.93822 4.96058 4.97746 5.01919 5.09752 5.15603 5.24193 5.31267 5.40661 5.45805 5.47740 5.54083 5.76018 5.77195 5.86142 6.06041 6.09439 6.29327 6.86921 7.02749 7.39738 8.93145 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.005222 C = 0.004419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.377392 B = 5360.796454 C = 6335.097342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 H 0.052 0.948 4 C 0.038 3.962 5 C -0.530 4.530 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.285 1.285 12 H -0.266 1.266 13 C 0.074 3.926 14 N -0.515 5.515 15 C 0.033 3.967 16 C -0.117 4.117 17 C -0.128 4.128 18 C 0.106 3.894 19 H 0.107 0.893 20 C -0.051 4.051 21 C -0.168 4.168 22 C 0.081 3.919 23 N -0.516 5.516 24 C 0.087 3.913 25 C -0.167 4.167 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.030 0.970 29 H -0.019 1.019 30 H -0.019 1.019 31 H 0.262 0.738 32 H 0.053 0.947 33 H 0.029 0.971 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.132 0.868 41 H 0.162 0.838 42 H 0.178 0.822 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 2.302 -20.278 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 H 0.071 0.929 4 C 0.001 3.999 5 C -0.568 4.568 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.054 4.054 14 N -0.238 5.238 15 C -0.095 4.095 16 C -0.154 4.154 17 C -0.166 4.166 18 C -0.001 4.001 19 H 0.125 0.875 20 C -0.060 4.060 21 C -0.188 4.188 22 C -0.074 4.074 23 N -0.226 5.226 24 C -0.070 4.070 25 C -0.187 4.187 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.049 0.951 29 H -0.001 1.001 30 H 0.000 1.000 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.097 0.903 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.115 0.885 40 H 0.150 0.850 41 H 0.179 0.821 42 H 0.195 0.805 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -1.014 1.537 -19.872 19.957 hybrid contribution 0.628 0.482 1.210 1.446 sum -0.386 2.019 -18.661 18.774 Atomic orbital electron populations 1.21458 0.94759 1.00003 1.00581 1.21001 0.96652 0.98326 0.92993 0.92943 1.18946 0.93700 0.94274 0.93013 1.21592 1.34568 1.08580 0.92012 0.92055 1.25979 0.95180 0.96072 1.02722 1.70111 1.40230 1.23001 1.24347 0.85548 0.78976 0.78800 0.78042 1.19172 1.20998 1.19077 1.22374 0.96887 0.96165 0.89946 1.63892 1.52742 1.06010 1.01142 1.23208 0.95088 0.93335 0.97839 1.22684 1.03524 0.96273 0.92964 1.22893 0.99014 0.94957 0.99765 1.21699 0.99797 0.87390 0.91257 0.87477 1.20801 0.93476 0.96808 0.94944 1.22070 0.96831 0.99057 1.00883 1.22948 1.00244 0.88113 0.96104 1.67652 1.08030 1.33465 1.13408 1.23204 0.91188 0.98887 0.93718 1.22330 1.02081 0.92505 1.01808 0.94393 0.91261 0.95114 1.00068 1.00034 0.92951 0.92837 0.95325 0.90336 0.94593 0.89488 0.89262 0.91399 0.88459 0.85015 0.82058 0.80548 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -2.99 2.39 -10.79 -0.03 -3.02 16 3 H 0.05 2.23 7.59 -2.39 -0.02 2.21 16 4 C 0.04 2.08 4.45 29.85 0.13 2.22 16 5 C -0.53 -30.64 8.41 25.60 0.22 -30.43 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 8 N -0.94 -58.64 13.29 21.45 0.28 -58.36 16 9 Si 0.96 45.18 29.54 68.60 2.03 47.20 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 C 0.07 2.61 2.82 86.30 0.24 2.86 16 14 N -0.51 -14.01 4.57 -864.91 -3.96 -17.97 16 15 C 0.03 0.79 6.00 86.77 0.52 1.31 16 16 C -0.12 -1.90 7.08 31.98 0.23 -1.68 16 17 C -0.13 -2.12 6.37 31.77 0.20 -1.91 16 18 C 0.11 2.29 3.66 44.51 0.16 2.45 16 19 H 0.11 2.06 7.98 -2.38 -0.02 2.04 16 20 C -0.05 -1.25 2.98 -19.67 -0.06 -1.31 16 21 C -0.17 -4.49 6.46 22.36 0.14 -4.34 16 22 C 0.08 2.33 11.18 84.68 0.95 3.28 16 23 N -0.52 -15.56 10.36 -195.84 -2.03 -17.59 16 24 C 0.09 2.17 11.18 84.68 0.95 3.12 16 25 C -0.17 -3.82 9.66 22.36 0.22 -3.60 16 26 H 0.04 1.59 6.95 -2.39 -0.02 1.57 16 27 H 0.07 2.35 7.75 -2.39 -0.02 2.33 16 28 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 29 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 30 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 31 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 32 H 0.05 2.04 6.47 -2.38 -0.02 2.02 16 33 H 0.03 1.06 5.37 -2.39 -0.01 1.05 16 34 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.04 0.94 7.53 -2.39 -0.02 0.93 16 36 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.07 1.19 6.69 -2.39 -0.02 1.17 16 39 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.13 3.35 6.86 -2.91 -0.02 3.33 16 41 H 0.16 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.18 3.32 8.06 -2.91 -0.02 3.30 16 43 H 0.16 2.70 8.02 -2.91 -0.02 2.67 16 Total: -1.00 -69.19 335.76 2.27 -66.92 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.97 Total: 14.24 kcal Atomic # 6 Polarization: -39.43 SS G_CDS: 4.98 Total: -34.45 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -5.70 Total: -93.91 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.19 2.27 -66.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602658136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.220 kcal (2) G-P(sol) polarization free energy of solvation -69.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds