Wall clock time and date at job start Mon Mar 30 2020 01:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.52998 * 109.47376 * 240.00154 * 2 1 3 5 5 C 1.50702 * 109.47229 * 64.99669 * 4 2 1 6 6 H 1.08000 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00078 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99727 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47311 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46919 * 120.00538 * 9 7 5 12 12 H 1.48501 * 109.47295 * 240.00563 * 9 7 5 13 13 C 1.53003 * 109.47006 * 119.99958 * 2 1 3 14 14 N 1.46897 * 109.47038 * 295.00291 * 13 2 1 15 15 C 1.48676 * 111.10739 * 285.41303 * 14 13 2 16 16 C 1.54377 * 104.67144 * 201.09988 * 15 14 13 17 17 C 1.54261 * 105.06377 * 23.77534 * 16 15 14 18 18 C 1.48565 * 110.99940 * 170.00335 * 14 13 2 19 19 H 1.08998 * 110.40997 * 40.13516 * 18 14 13 20 20 C 1.50706 * 110.40618 * 277.81509 * 18 14 13 21 21 C 1.38675 * 120.41497 * 141.64959 * 20 18 14 22 22 C 1.38631 * 118.41792 * 180.02562 * 21 20 18 23 23 C 1.38221 * 119.16077 * 0.25627 * 22 21 20 24 24 N 1.31860 * 120.76509 * 359.49797 * 23 22 21 25 25 C 1.31882 * 121.72556 * 0.49011 * 24 23 22 26 26 H 1.09003 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47410 * 299.99777 * 1 2 3 28 28 H 1.08999 * 109.47010 * 60.00101 * 1 2 3 29 29 H 1.08995 * 109.47493 * 185.00596 * 4 2 1 30 30 H 1.09004 * 109.46775 * 305.00224 * 4 2 1 31 31 H 0.96997 * 119.99763 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46707 * 174.99985 * 13 2 1 33 33 H 1.09004 * 109.46820 * 55.00282 * 13 2 1 34 34 H 1.08998 * 110.43715 * 82.26393 * 15 14 13 35 35 H 1.08996 * 110.30818 * 319.87332 * 15 14 13 36 36 H 1.09006 * 110.32512 * 264.87406 * 16 15 14 37 37 H 1.09004 * 110.31939 * 142.67143 * 16 15 14 38 38 H 1.09001 * 110.32400 * 241.10296 * 17 16 15 39 39 H 1.08996 * 110.32185 * 118.89104 * 17 16 15 40 40 H 1.07997 * 120.79161 * 0.04303 * 21 20 18 41 41 H 1.08002 * 120.41548 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.62066 * 179.74470 * 23 22 21 43 43 H 1.07993 * 119.62126 * 179.75488 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6766 -1.5187 -3.8511 9 14 1.4997 0.5634 -5.2496 10 1 0.7432 1.7749 -4.8433 11 1 2.7181 0.9682 -5.9959 12 1 0.6459 -0.2854 -6.1189 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.4873 1.2569 2.6013 16 6 2.3634 1.6279 4.0947 17 6 1.9871 0.3112 4.8050 18 6 1.9153 -0.7445 3.6810 19 1 2.8628 -1.2771 3.5985 20 6 0.7901 -1.7129 3.9405 21 6 1.0556 -2.9822 4.4319 22 6 -0.0107 -3.8396 4.6550 23 6 -1.2933 -3.4058 4.3772 24 7 -1.5088 -2.1897 3.9150 25 6 -0.5190 -1.3474 3.6913 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9239 -1.8415 -4.7317 32 1 3.1263 -0.7995 1.2056 33 1 1.6053 -1.7198 1.2951 34 1 2.1041 2.0634 1.9762 35 1 3.5249 1.0390 2.3486 36 1 1.5794 2.3719 4.2362 37 1 3.3148 2.0030 4.4718 38 1 1.0184 0.4089 5.2951 39 1 2.7538 0.0401 5.5307 40 1 2.0688 -3.2952 4.6361 41 1 0.1591 -4.8355 5.0368 42 1 -2.1291 -4.0690 4.5444 43 1 -0.7340 -0.3607 3.3086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602659458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:34 Heat of formation + Delta-G solvation = 21.059861 kcal Electronic energy + Delta-G solvation = -21363.121039 eV Core-core repulsion = 18407.279156 eV Total energy + Delta-G solvation = -2955.841882 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40311 -38.67661 -35.35020 -32.82939 -32.47056 -31.62206 -30.66238 -27.91270 -26.79459 -25.36151 -23.66396 -23.29508 -22.60092 -20.95797 -20.26571 -18.72853 -17.13306 -16.60380 -16.20696 -15.87308 -15.33766 -14.50217 -14.38744 -14.22218 -13.90196 -13.71427 -13.17679 -13.03783 -12.87251 -12.57035 -12.41209 -12.16474 -11.80461 -11.39388 -11.34609 -11.10538 -11.03105 -10.82731 -10.70637 -10.58115 -10.26604 -10.23540 -9.76747 -9.61458 -9.39650 -9.11921 -8.96075 -8.83934 -8.31320 -8.25651 -5.95956 -3.96741 1.15672 1.31335 3.33366 3.40945 3.45233 3.82405 4.08470 4.45651 4.50912 4.67069 4.71685 4.83123 4.95555 5.04101 5.06464 5.10011 5.33669 5.40101 5.50081 5.56725 5.63980 5.70188 5.78417 5.80394 5.89248 6.00139 6.08133 6.13554 6.14740 6.18227 6.28768 6.43281 6.54135 6.71327 6.76113 7.01714 7.05437 7.20703 7.27506 7.39477 7.71430 7.87481 8.04540 8.06625 8.48805 9.09889 9.66661 11.15742 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.004442 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.517977 B = 6302.397740 C = 7047.597038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 H 0.055 0.945 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.057 0.943 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.052 3.948 14 N -0.500 5.500 15 C 0.034 3.966 16 C -0.123 4.123 17 C -0.113 4.113 18 C 0.101 3.899 19 H 0.059 0.941 20 C -0.118 4.118 21 C -0.076 4.076 22 C -0.178 4.178 23 C 0.090 3.910 24 N -0.488 5.488 25 C 0.132 3.868 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.053 0.947 29 H 0.011 0.989 30 H 0.014 0.986 31 H 0.258 0.742 32 H 0.032 0.968 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.129 0.871 41 H 0.131 0.869 42 H 0.151 0.849 43 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.477 -0.011 20.202 20.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.075 0.925 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.076 4.076 14 N -0.223 5.223 15 C -0.094 4.094 16 C -0.161 4.161 17 C -0.151 4.151 18 C -0.008 4.008 19 H 0.077 0.923 20 C -0.120 4.120 21 C -0.102 4.102 22 C -0.198 4.198 23 C -0.067 4.067 24 N -0.196 5.196 25 C -0.025 4.025 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.063 0.937 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.168 0.832 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.831 0.268 19.822 20.025 hybrid contribution 1.662 -0.289 -0.821 1.876 sum -1.169 -0.022 19.001 19.037 Atomic orbital electron populations 1.21569 0.95703 1.00407 1.00155 1.21138 0.95934 0.98953 0.93456 0.92663 1.19130 0.95801 0.95564 0.90581 1.21269 1.34378 1.08235 0.90934 0.92500 1.25020 0.95354 0.95094 0.99095 1.69978 1.39262 1.21304 1.23221 0.86584 0.78229 0.80173 0.83318 1.19714 1.21143 1.21090 1.22483 0.97683 0.97348 0.90043 1.65345 1.51139 1.04921 1.00925 1.23121 0.95940 0.94247 0.96104 1.22311 1.01494 0.97318 0.95024 1.22321 1.01969 0.94163 0.96659 1.21451 0.94282 0.93209 0.91871 0.92307 1.20682 0.96384 0.94852 1.00118 1.21457 0.99557 0.92902 0.96302 1.22045 0.93984 1.00843 1.02910 1.22746 0.96093 0.92900 0.94920 1.67777 1.36441 1.03706 1.11694 1.22740 0.87473 0.99184 0.93123 0.94404 0.93929 0.92780 0.97049 0.96720 0.93195 0.94971 0.91593 0.89593 0.93728 0.90979 0.91536 0.91002 0.91453 0.85315 0.85137 0.83195 0.81957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.56 2.39 -90.62 -0.22 -1.78 16 3 H 0.05 1.15 7.29 -51.93 -0.38 0.77 16 4 C 0.03 0.69 4.45 -27.88 -0.12 0.57 16 5 C -0.51 -14.41 8.41 -34.44 -0.29 -14.70 16 6 H 0.06 1.57 7.06 -52.49 -0.37 1.20 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 9 Si 0.89 21.92 29.54 -169.99 -5.02 16.89 16 10 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 13 C 0.05 0.90 4.17 -3.82 -0.02 0.89 16 14 N -0.50 -7.09 3.74 -223.40 -0.84 -7.92 16 15 C 0.03 0.43 5.92 -2.12 -0.01 0.41 16 16 C -0.12 -1.22 7.00 -25.35 -0.18 -1.40 16 17 C -0.11 -1.12 6.53 -25.35 -0.17 -1.29 16 18 C 0.10 1.22 2.47 -67.22 -0.17 1.06 16 19 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 20 C -0.12 -1.49 4.53 -104.48 -0.47 -1.96 16 21 C -0.08 -0.84 9.84 -39.28 -0.39 -1.23 16 22 C -0.18 -1.86 10.11 -39.44 -0.40 -2.26 16 23 C 0.09 1.06 11.18 -17.55 -0.20 0.87 16 24 N -0.49 -7.01 10.36 -13.25 -0.14 -7.15 16 25 C 0.13 1.85 10.41 -17.55 -0.18 1.66 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 28 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.03 0.57 7.77 -51.93 -0.40 0.16 16 33 H 0.07 1.21 7.78 -51.93 -0.40 0.81 16 34 H 0.09 1.14 7.74 -51.93 -0.40 0.74 16 35 H 0.04 0.58 7.75 -51.93 -0.40 0.18 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.72 7.77 -51.93 -0.40 0.32 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 42 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 43 H 0.16 2.32 7.71 -52.49 -0.40 1.91 16 LS Contribution 344.82 15.07 5.20 5.20 Total: -1.00 -31.03 344.82 -9.92 -40.95 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.28 Total: -1.68 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: -2.57 Total: -19.75 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: -0.24 Total: -41.61 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.03 -9.92 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602659458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.008 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds