Wall clock time and date at job start Mon Mar 30 2020 01:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47380 * 2 1 4 4 C 1.52998 * 109.47376 * 240.00154 * 2 1 3 5 5 C 1.50702 * 109.47229 * 64.99669 * 4 2 1 6 6 H 1.08000 * 120.00100 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99929 * 179.97438 * 5 4 2 8 8 N 1.31513 * 120.00078 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99727 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47311 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46919 * 120.00538 * 9 7 5 12 12 H 1.48501 * 109.47295 * 240.00563 * 9 7 5 13 13 C 1.53003 * 109.47006 * 119.99958 * 2 1 3 14 14 N 1.46897 * 109.47038 * 295.00291 * 13 2 1 15 15 C 1.48676 * 111.10739 * 285.41303 * 14 13 2 16 16 C 1.54377 * 104.67144 * 201.09988 * 15 14 13 17 17 C 1.54261 * 105.06377 * 23.77534 * 16 15 14 18 18 C 1.48565 * 110.99940 * 170.00335 * 14 13 2 19 19 H 1.08998 * 110.40997 * 40.13516 * 18 14 13 20 20 C 1.50706 * 110.40618 * 277.81509 * 18 14 13 21 21 C 1.38675 * 120.41497 * 141.64959 * 20 18 14 22 22 C 1.38631 * 118.41792 * 180.02562 * 21 20 18 23 23 C 1.38221 * 119.16077 * 0.25627 * 22 21 20 24 24 N 1.31860 * 120.76509 * 359.49797 * 23 22 21 25 25 C 1.31882 * 121.72556 * 0.49011 * 24 23 22 26 26 H 1.09003 * 109.47274 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47410 * 299.99777 * 1 2 3 28 28 H 1.08999 * 109.47010 * 60.00101 * 1 2 3 29 29 H 1.08995 * 109.47493 * 185.00596 * 4 2 1 30 30 H 1.09004 * 109.46775 * 305.00224 * 4 2 1 31 31 H 0.96997 * 119.99763 * 179.97438 * 8 7 5 32 32 H 1.09004 * 109.46707 * 174.99985 * 13 2 1 33 33 H 1.09004 * 109.46820 * 55.00282 * 13 2 1 34 34 H 1.08998 * 110.43715 * 82.26393 * 15 14 13 35 35 H 1.08996 * 110.30818 * 319.87332 * 15 14 13 36 36 H 1.09006 * 110.32512 * 264.87406 * 16 15 14 37 37 H 1.09004 * 110.31939 * 142.67143 * 16 15 14 38 38 H 1.09001 * 110.32400 * 241.10296 * 17 16 15 39 39 H 1.08996 * 110.32185 * 118.89104 * 17 16 15 40 40 H 1.07997 * 120.79161 * 0.04303 * 21 20 18 41 41 H 1.08002 * 120.41548 * 179.97438 * 22 21 20 42 42 H 1.08002 * 119.62066 * 179.74470 * 23 22 21 43 43 H 1.07993 * 119.62126 * 179.75488 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3757 7 6 1.9933 -0.4017 -3.7283 8 7 2.6766 -1.5187 -3.8511 9 14 1.4997 0.5634 -5.2496 10 1 0.7432 1.7749 -4.8433 11 1 2.7181 0.9682 -5.9959 12 1 0.6459 -0.2854 -6.1189 13 6 2.0400 -0.7213 1.2493 14 7 1.6513 0.0374 2.4456 15 6 2.4873 1.2569 2.6013 16 6 2.3634 1.6279 4.0947 17 6 1.9871 0.3112 4.8050 18 6 1.9153 -0.7445 3.6810 19 1 2.8628 -1.2771 3.5985 20 6 0.7901 -1.7129 3.9405 21 6 1.0556 -2.9822 4.4319 22 6 -0.0107 -3.8396 4.6550 23 6 -1.2933 -3.4058 4.3772 24 7 -1.5088 -2.1897 3.9150 25 6 -0.5190 -1.3474 3.6913 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1263 -0.7995 -1.2055 30 1 1.6054 -1.7198 -1.2951 31 1 2.9239 -1.8415 -4.7317 32 1 3.1263 -0.7995 1.2056 33 1 1.6053 -1.7198 1.2951 34 1 2.1041 2.0634 1.9762 35 1 3.5249 1.0390 2.3486 36 1 1.5794 2.3719 4.2362 37 1 3.3148 2.0030 4.4718 38 1 1.0184 0.4089 5.2951 39 1 2.7538 0.0401 5.5307 40 1 2.0688 -3.2952 4.6361 41 1 0.1591 -4.8355 5.0368 42 1 -2.1291 -4.0690 4.5444 43 1 -0.7340 -0.3607 3.3086 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602659458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:33 Heat of formation + Delta-G solvation = 3.647196 kcal Electronic energy + Delta-G solvation = -21363.876109 eV Core-core repulsion = 18407.279156 eV Total energy + Delta-G solvation = -2956.596952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.35450 -39.73778 -37.02704 -34.52613 -33.70117 -32.51292 -32.03677 -28.88855 -28.75333 -26.87055 -24.92191 -24.47776 -23.91003 -22.07778 -21.24915 -20.33960 -18.54749 -18.03254 -17.36953 -16.92851 -16.53669 -16.35128 -15.72528 -15.25815 -15.10125 -14.75974 -14.50019 -14.40400 -13.98304 -13.89192 -13.76475 -13.37168 -13.21128 -13.12006 -12.79114 -12.60563 -12.37155 -12.26171 -12.18144 -11.96672 -11.94645 -11.47443 -11.34362 -11.09663 -10.94347 -10.64688 -10.55220 -10.34237 -9.79143 -9.41581 -8.18785 -6.27818 0.24993 0.41699 1.38715 1.39399 1.52525 2.41002 2.86514 3.03921 3.14818 3.55407 3.74909 3.80302 3.98922 4.05170 4.12304 4.19183 4.22344 4.23996 4.36627 4.46105 4.51677 4.66746 4.69297 4.80810 4.81690 4.88819 4.95557 4.99634 5.02913 5.09308 5.21837 5.24426 5.26485 5.32228 5.38525 5.44698 5.47334 5.53993 5.76504 5.85704 5.87213 6.02360 6.06379 6.30277 6.88019 7.13386 7.40591 8.93694 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.019804 B = 0.004442 C = 0.003972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.517977 B = 6302.397740 C = 7047.597038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.066 4.066 3 H 0.055 0.945 4 C 0.034 3.966 5 C -0.527 4.527 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.280 1.280 13 C 0.069 3.931 14 N -0.504 5.504 15 C 0.028 3.972 16 C -0.114 4.114 17 C -0.105 4.105 18 C 0.101 3.899 19 H 0.062 0.938 20 C -0.126 4.126 21 C -0.081 4.081 22 C -0.171 4.171 23 C 0.077 3.923 24 N -0.518 5.518 25 C 0.112 3.888 26 H 0.025 0.975 27 H 0.065 0.935 28 H 0.037 0.963 29 H -0.014 1.014 30 H -0.016 1.016 31 H 0.262 0.738 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.040 0.960 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.152 0.848 41 H 0.164 0.836 42 H 0.174 0.826 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 0.438 21.637 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.085 4.085 3 H 0.074 0.926 4 C -0.004 4.004 5 C -0.565 4.565 6 H 0.079 0.921 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.185 1.185 11 H -0.204 1.204 12 H -0.206 1.206 13 C -0.059 4.059 14 N -0.228 5.228 15 C -0.100 4.100 16 C -0.152 4.152 17 C -0.143 4.143 18 C -0.008 4.008 19 H 0.080 0.920 20 C -0.128 4.128 21 C -0.108 4.108 22 C -0.190 4.190 23 C -0.080 4.080 24 N -0.227 5.227 25 C -0.045 4.045 26 H 0.045 0.955 27 H 0.084 0.916 28 H 0.056 0.944 29 H 0.004 0.996 30 H 0.003 0.997 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.107 0.893 40 H 0.170 0.830 41 H 0.181 0.819 42 H 0.191 0.809 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.794 0.734 21.275 21.470 hybrid contribution 1.650 -0.501 -1.226 2.116 sum -1.144 0.233 20.049 20.083 Atomic orbital electron populations 1.21430 0.94979 0.99705 1.00413 1.20925 0.96324 0.98454 0.92752 0.92631 1.19007 0.94009 0.94468 0.92912 1.21647 1.34280 1.08508 0.92026 0.92142 1.25946 0.95228 0.96087 1.02636 1.70109 1.40404 1.22993 1.24211 0.85461 0.78117 0.78912 0.78968 1.18548 1.20371 1.20601 1.22101 0.96882 0.96587 0.90344 1.65263 1.51531 1.05400 1.00576 1.23197 0.95292 0.93208 0.98256 1.22280 1.02822 0.97466 0.92638 1.22305 1.02718 0.93205 0.96111 1.21529 0.94198 0.93674 0.91358 0.92003 1.20754 0.95847 0.95746 1.00486 1.21811 1.01032 0.92309 0.95625 1.22413 0.93115 1.02025 1.01453 1.23240 0.97773 0.92431 0.94519 1.67723 1.37151 1.04989 1.12878 1.22627 0.88252 0.99084 0.94489 0.95544 0.91598 0.94384 0.99559 0.99717 0.92949 0.95583 0.92897 0.90462 0.94122 0.90404 0.89545 0.91078 0.89302 0.83022 0.81875 0.80869 0.83171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -2.77 2.39 -10.79 -0.03 -2.80 16 3 H 0.06 2.34 7.29 -2.39 -0.02 2.32 16 4 C 0.03 1.81 4.45 29.85 0.13 1.95 16 5 C -0.53 -30.38 8.41 25.60 0.22 -30.17 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 8 N -0.94 -58.10 13.29 21.45 0.28 -57.81 16 9 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 C 0.07 2.45 4.17 86.30 0.36 2.81 16 14 N -0.50 -14.06 3.74 -860.70 -3.22 -17.28 16 15 C 0.03 0.68 5.92 86.43 0.51 1.19 16 16 C -0.11 -1.99 7.00 31.49 0.22 -1.77 16 17 C -0.11 -1.84 6.53 31.49 0.21 -1.63 16 18 C 0.10 2.31 2.47 44.32 0.11 2.42 16 19 H 0.06 1.39 7.91 -2.39 -0.02 1.37 16 20 C -0.13 -3.05 4.53 -19.77 -0.09 -3.14 16 21 C -0.08 -1.65 9.84 22.47 0.22 -1.43 16 22 C -0.17 -3.16 10.11 22.36 0.23 -2.93 16 23 C 0.08 1.70 11.18 84.68 0.95 2.65 16 24 N -0.52 -14.77 10.36 -195.85 -2.03 -16.80 16 25 C 0.11 3.13 10.41 84.67 0.88 4.01 16 26 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 2.34 7.75 -2.39 -0.02 2.32 16 28 H 0.04 1.63 6.95 -2.39 -0.02 1.61 16 29 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 30 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 31 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 32 H 0.03 0.94 7.77 -2.38 -0.02 0.92 16 33 H 0.05 2.00 7.78 -2.38 -0.02 1.98 16 34 H 0.08 2.00 7.74 -2.39 -0.02 1.98 16 35 H 0.04 1.02 7.75 -2.39 -0.02 1.00 16 36 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.07 1.28 7.77 -2.39 -0.02 1.26 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 41 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.15 4.37 7.71 -2.91 -0.02 4.35 16 Total: -1.00 -68.36 344.82 3.03 -65.32 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.96 Total: 11.54 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 5.02 Total: -32.20 kcal Atomic # 7 Polarization: -86.93 SS G_CDS: -4.96 Total: -91.89 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -68.36 3.03 -65.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602659458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.968 kcal (2) G-P(sol) polarization free energy of solvation -68.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds