Wall clock time and date at job start Mon Mar 30 2020 01:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46960 * 2 1 4 4 C 1.53002 * 109.47125 * 240.00576 * 2 1 3 5 5 C 1.50696 * 109.47398 * 64.99935 * 4 2 1 6 6 H 1.08002 * 120.00093 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99893 * 180.02562 * 5 4 2 8 8 N 1.31504 * 120.00083 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99780 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47172 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46952 * 120.00008 * 9 7 5 12 12 H 1.48501 * 109.46796 * 239.99687 * 9 7 5 13 13 C 1.52994 * 109.46929 * 120.00155 * 2 1 3 14 14 N 1.46899 * 109.47557 * 295.00020 * 13 2 1 15 15 C 1.46896 * 111.00316 * 170.00090 * 14 13 2 16 16 C 1.50707 * 109.47213 * 199.79335 * 15 14 13 17 17 C 1.38220 * 119.61569 * 96.16472 * 16 15 14 18 18 C 1.38630 * 119.16005 * 180.02562 * 17 16 15 19 19 C 1.38670 * 118.41970 * 359.97438 * 18 17 16 20 20 C 1.38182 * 119.16353 * 0.28237 * 19 18 17 21 21 N 1.31848 * 119.61605 * 276.18674 * 16 15 14 22 22 C 1.46897 * 111.00224 * 293.95804 * 14 13 2 23 23 C 1.52995 * 117.50367 * 142.95184 * 22 14 13 24 24 C 1.53003 * 117.50039 * 74.29055 * 22 14 13 25 25 H 1.09001 * 109.47159 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47388 * 299.99904 * 1 2 3 27 27 H 1.09004 * 109.46853 * 59.99705 * 1 2 3 28 28 H 1.08997 * 109.46923 * 185.00085 * 4 2 1 29 29 H 1.09001 * 109.46992 * 304.99778 * 4 2 1 30 30 H 0.97003 * 120.00082 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47143 * 175.00351 * 13 2 1 32 32 H 1.09001 * 109.47144 * 55.00206 * 13 2 1 33 33 H 1.08999 * 109.47167 * 79.79548 * 15 14 13 34 34 H 1.08997 * 109.46885 * 319.78909 * 15 14 13 35 35 H 1.08007 * 120.42480 * 0.02562 * 17 16 15 36 36 H 1.08001 * 120.79477 * 180.02562 * 18 17 16 37 37 H 1.08006 * 120.42182 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.61857 * 179.70064 * 20 19 18 39 39 H 1.08999 * 115.54964 * 288.62547 * 22 14 13 40 40 H 1.08999 * 117.49824 * 0.02562 * 23 22 14 41 41 H 1.08999 * 117.50214 * 145.02022 * 23 22 14 42 42 H 1.09002 * 117.50150 * 214.98576 * 24 22 14 43 43 H 1.09001 * 117.49762 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9924 -0.4020 -3.7284 8 7 2.6756 -1.5190 -3.8513 9 14 1.4989 0.5632 -5.2496 10 1 0.7424 1.7748 -4.8433 11 1 2.7172 0.9670 -5.9965 12 1 0.6442 -0.2853 -6.1185 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 1.9124 -0.7359 3.6671 16 6 1.0894 -0.1786 4.7999 17 6 -0.1253 -0.7596 5.1119 18 6 -0.8749 -0.2390 6.1555 19 6 -0.3720 0.8510 6.8496 20 6 0.8480 1.3821 6.4770 21 7 1.5363 0.8577 5.4816 22 6 2.3340 1.3373 2.4896 23 6 1.5445 2.5321 3.0280 24 6 1.8449 2.4248 1.5309 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.1263 -0.7993 -1.2056 29 1 1.6054 -1.7197 -1.2953 30 1 2.9229 -1.8419 -4.7319 31 1 3.1263 -0.7994 1.2056 32 1 1.6053 -1.7198 1.2950 33 1 2.9706 -0.6695 3.9199 34 1 1.6431 -1.7790 3.5012 35 1 -0.4861 -1.6084 4.5499 36 1 -1.8274 -0.6726 6.4221 37 1 -0.9292 1.2827 7.6680 38 1 1.2443 2.2341 7.0094 39 1 3.4016 1.3006 2.7064 40 1 0.5186 2.3534 3.3501 41 1 2.0926 3.2816 3.5988 42 1 2.5906 3.1038 1.1174 43 1 1.0169 2.1755 0.8673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602667486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:55 Heat of formation + Delta-G solvation = 60.011514 kcal Electronic energy + Delta-G solvation = -21279.539837 eV Core-core repulsion = 18325.387025 eV Total energy + Delta-G solvation = -2954.152812 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.27923 -38.44720 -34.93320 -34.07989 -32.51293 -32.16564 -30.95312 -27.14252 -26.37254 -24.68049 -23.54430 -22.67762 -22.27465 -21.83769 -20.05367 -18.88516 -16.87456 -16.33472 -16.28085 -15.73345 -15.35517 -14.95374 -14.78442 -14.37772 -13.74204 -13.55359 -13.34277 -13.05872 -12.69810 -12.55689 -12.20682 -11.94967 -11.56522 -11.41835 -11.29728 -10.98868 -10.84078 -10.71456 -10.35315 -10.22784 -10.15701 -9.88917 -9.74175 -9.43111 -9.34108 -9.11509 -8.94871 -8.83481 -8.28761 -8.01746 -5.94159 -3.94632 1.06041 1.24678 3.34163 3.41809 3.45902 3.64968 4.17720 4.22179 4.37364 4.51557 4.66445 4.75884 5.00237 5.07873 5.29435 5.32472 5.40268 5.41980 5.45857 5.60313 5.64614 5.74634 5.74933 5.98927 6.01636 6.03637 6.09893 6.15290 6.22949 6.36441 6.42833 6.57282 6.61341 6.65146 6.76461 7.07465 7.21714 7.26818 7.40789 7.51075 7.75064 7.92012 8.01247 8.07012 8.51593 9.12129 9.68571 11.17482 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.033692 B = 0.003772 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.859408 B = 7421.510072 C = 7629.237356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.092 4.092 3 H 0.075 0.925 4 C 0.027 3.973 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.065 3.935 14 N -0.504 5.504 15 C 0.103 3.897 16 C 0.149 3.851 17 C -0.156 4.156 18 C -0.079 4.079 19 C -0.183 4.183 20 C 0.096 3.904 21 N -0.468 5.468 22 C 0.020 3.980 23 C -0.152 4.152 24 C -0.173 4.173 25 H 0.038 0.962 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.012 0.988 29 H 0.013 0.987 30 H 0.258 0.742 31 H 0.030 0.970 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.129 0.871 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.652 3.639 20.859 21.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.111 4.111 3 H 0.093 0.907 4 C -0.010 4.010 5 C -0.547 4.547 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.061 4.061 14 N -0.228 5.228 15 C -0.025 4.025 16 C 0.011 3.989 17 C -0.176 4.176 18 C -0.105 4.105 19 C -0.203 4.203 20 C -0.061 4.061 21 N -0.178 5.178 22 C -0.089 4.089 23 C -0.189 4.189 24 C -0.211 4.211 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.032 0.968 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.151 0.849 36 H 0.148 0.852 37 H 0.147 0.853 38 H 0.168 0.832 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.103 0.897 42 H 0.109 0.891 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.263 3.955 20.464 21.274 hybrid contribution -0.245 -0.139 -0.590 0.654 sum -4.508 3.816 19.874 20.733 Atomic orbital electron populations 1.21598 0.96104 1.00403 0.99932 1.21487 0.95668 1.00520 0.93397 0.90733 1.19123 0.95858 0.95463 0.90560 1.21268 1.34273 1.08186 0.90946 0.92567 1.25014 0.95420 0.95089 0.99054 1.69973 1.39296 1.21305 1.23169 0.86604 0.78226 0.80177 0.83412 1.19748 1.21155 1.21152 1.22321 0.97859 0.96711 0.89255 1.61753 1.57367 1.02647 1.01035 1.20926 0.97233 0.96672 0.87683 1.21142 0.92605 0.91022 0.94108 1.21966 0.95503 1.01968 0.98205 1.21545 0.99300 0.95237 0.94418 1.22079 0.98128 0.98232 1.01824 1.22693 0.91606 0.98377 0.93420 1.67526 1.34948 1.09508 1.05775 1.22168 0.94757 0.86291 1.05699 1.22784 1.00653 0.99311 0.96184 1.23296 1.04280 1.00469 0.93015 0.94299 0.94113 0.92862 0.97008 0.96816 0.93226 0.95144 0.91380 0.92968 0.89492 0.84905 0.85199 0.85315 0.83243 0.90246 0.89671 0.89694 0.89116 0.86919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.22 37.16 0.31 -2.09 16 2 C -0.09 -1.88 1.85 -90.62 -0.17 -2.05 16 3 H 0.07 1.54 4.51 -51.93 -0.23 1.31 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.24 8.41 -34.44 -0.29 -14.53 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.07 1.13 4.33 -3.83 -0.02 1.12 16 14 N -0.50 -7.68 4.01 -228.09 -0.92 -8.60 16 15 C 0.10 1.36 5.32 -4.97 -0.03 1.34 16 16 C 0.15 1.89 5.84 -82.59 -0.48 1.41 16 17 C -0.16 -1.72 9.72 -39.44 -0.38 -2.10 16 18 C -0.08 -0.74 10.18 -39.28 -0.40 -1.13 16 19 C -0.18 -1.62 10.11 -39.44 -0.40 -2.02 16 20 C 0.10 0.99 11.18 -17.55 -0.20 0.79 16 21 N -0.47 -5.94 8.77 -9.47 -0.08 -6.02 16 22 C 0.02 0.30 4.40 -67.71 -0.30 0.00 16 23 C -0.15 -2.12 8.90 -26.70 -0.24 -2.36 16 24 C -0.17 -2.66 8.22 -26.69 -0.22 -2.88 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.04 0.73 7.25 -51.93 -0.38 0.35 16 27 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 31 H 0.03 0.55 8.12 -51.93 -0.42 0.12 16 32 H 0.07 1.15 7.83 -51.93 -0.41 0.75 16 33 H 0.05 0.70 7.99 -51.93 -0.41 0.29 16 34 H 0.09 1.02 7.62 -51.93 -0.40 0.63 16 35 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.08 1.23 8.13 -51.93 -0.42 0.81 16 40 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.11 1.91 5.33 -51.93 -0.28 1.64 16 LS Contribution 343.70 15.07 5.18 5.18 Total: -1.00 -30.69 343.70 -10.18 -40.87 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.04 Total: 0.59 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.03 Total: -22.45 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.26 Total: -40.99 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.69 -10.18 -40.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.881 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds