Wall clock time and date at job start Mon Mar 30 2020 01:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 109.46960 * 2 1 4 4 C 1.53002 * 109.47125 * 240.00576 * 2 1 3 5 5 C 1.50696 * 109.47398 * 64.99935 * 4 2 1 6 6 H 1.08002 * 120.00093 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99893 * 180.02562 * 5 4 2 8 8 N 1.31504 * 120.00083 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99780 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47172 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46952 * 120.00008 * 9 7 5 12 12 H 1.48501 * 109.46796 * 239.99687 * 9 7 5 13 13 C 1.52994 * 109.46929 * 120.00155 * 2 1 3 14 14 N 1.46899 * 109.47557 * 295.00020 * 13 2 1 15 15 C 1.46896 * 111.00316 * 170.00090 * 14 13 2 16 16 C 1.50707 * 109.47213 * 199.79335 * 15 14 13 17 17 C 1.38220 * 119.61569 * 96.16472 * 16 15 14 18 18 C 1.38630 * 119.16005 * 180.02562 * 17 16 15 19 19 C 1.38670 * 118.41970 * 359.97438 * 18 17 16 20 20 C 1.38182 * 119.16353 * 0.28237 * 19 18 17 21 21 N 1.31848 * 119.61605 * 276.18674 * 16 15 14 22 22 C 1.46897 * 111.00224 * 293.95804 * 14 13 2 23 23 C 1.52995 * 117.50367 * 142.95184 * 22 14 13 24 24 C 1.53003 * 117.50039 * 74.29055 * 22 14 13 25 25 H 1.09001 * 109.47159 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47388 * 299.99904 * 1 2 3 27 27 H 1.09004 * 109.46853 * 59.99705 * 1 2 3 28 28 H 1.08997 * 109.46923 * 185.00085 * 4 2 1 29 29 H 1.09001 * 109.46992 * 304.99778 * 4 2 1 30 30 H 0.97003 * 120.00082 * 180.02562 * 8 7 5 31 31 H 1.09004 * 109.47143 * 175.00351 * 13 2 1 32 32 H 1.09001 * 109.47144 * 55.00206 * 13 2 1 33 33 H 1.08999 * 109.47167 * 79.79548 * 15 14 13 34 34 H 1.08997 * 109.46885 * 319.78909 * 15 14 13 35 35 H 1.08007 * 120.42480 * 0.02562 * 17 16 15 36 36 H 1.08001 * 120.79477 * 180.02562 * 18 17 16 37 37 H 1.08006 * 120.42182 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.61857 * 179.70064 * 20 19 18 39 39 H 1.08999 * 115.54964 * 288.62547 * 22 14 13 40 40 H 1.08999 * 117.49824 * 0.02562 * 23 22 14 41 41 H 1.08999 * 117.50214 * 145.02022 * 23 22 14 42 42 H 1.09002 * 117.50150 * 214.98576 * 24 22 14 43 43 H 1.09001 * 117.49762 * 359.97438 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 1.6414 0.0572 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9924 -0.4020 -3.7284 8 7 2.6756 -1.5190 -3.8513 9 14 1.4989 0.5632 -5.2496 10 1 0.7424 1.7748 -4.8433 11 1 2.7172 0.9670 -5.9965 12 1 0.6442 -0.2853 -6.1185 13 6 2.0400 -0.7213 1.2492 14 7 1.6514 0.0373 2.4456 15 6 1.9124 -0.7359 3.6671 16 6 1.0894 -0.1786 4.7999 17 6 -0.1253 -0.7596 5.1119 18 6 -0.8749 -0.2390 6.1555 19 6 -0.3720 0.8510 6.8496 20 6 0.8480 1.3821 6.4770 21 7 1.5363 0.8577 5.4816 22 6 2.3340 1.3373 2.4896 23 6 1.5445 2.5321 3.0280 24 6 1.8449 2.4248 1.5309 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 3.1263 -0.7993 -1.2056 29 1 1.6054 -1.7197 -1.2953 30 1 2.9229 -1.8419 -4.7319 31 1 3.1263 -0.7994 1.2056 32 1 1.6053 -1.7198 1.2950 33 1 2.9706 -0.6695 3.9199 34 1 1.6431 -1.7790 3.5012 35 1 -0.4861 -1.6084 4.5499 36 1 -1.8274 -0.6726 6.4221 37 1 -0.9292 1.2827 7.6680 38 1 1.2443 2.2341 7.0094 39 1 3.4016 1.3006 2.7064 40 1 0.5186 2.3534 3.3501 41 1 2.0926 3.2816 3.5988 42 1 2.5906 3.1038 1.1174 43 1 1.0169 2.1755 0.8673 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602667486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:54 Heat of formation + Delta-G solvation = 43.316775 kcal Electronic energy + Delta-G solvation = -21280.263775 eV Core-core repulsion = 18325.387025 eV Total energy + Delta-G solvation = -2954.876750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.12343 -39.68621 -36.59725 -35.30873 -34.16818 -33.19850 -32.04776 -29.00276 -27.70501 -26.11154 -24.63753 -24.17593 -23.40405 -22.83745 -21.33190 -20.49614 -18.45112 -17.66385 -17.17862 -16.84596 -16.56662 -16.35812 -16.06127 -15.85287 -15.12445 -14.72462 -14.46598 -14.22908 -14.10491 -13.92562 -13.62092 -13.29212 -13.04665 -12.85630 -12.75433 -12.54401 -12.37281 -12.25711 -12.20446 -11.93286 -11.66927 -11.16711 -11.02540 -10.82263 -10.72278 -10.61614 -10.46609 -10.23450 -9.83207 -9.26229 -8.15158 -6.23437 0.28046 0.50385 1.40335 1.40977 1.53841 2.43216 2.69588 3.00996 3.18501 3.22036 3.50522 3.80731 4.09890 4.12662 4.14836 4.17819 4.26779 4.28888 4.36156 4.48838 4.54072 4.60923 4.66278 4.79548 4.85290 4.86038 4.89551 4.96285 5.00210 5.10686 5.16796 5.31168 5.35972 5.37747 5.39263 5.50882 5.53271 5.60074 5.85722 5.90669 5.94712 6.09106 6.23289 6.35574 6.92802 7.21650 7.44546 8.97160 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.033692 B = 0.003772 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.859408 B = 7421.510072 C = 7629.237356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.082 4.082 3 H 0.074 0.926 4 C 0.034 3.966 5 C -0.523 4.523 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.958 3.042 10 H -0.262 1.262 11 H -0.281 1.281 12 H -0.280 1.280 13 C 0.075 3.925 14 N -0.500 5.500 15 C 0.104 3.896 16 C 0.127 3.873 17 C -0.166 4.166 18 C -0.081 4.081 19 C -0.174 4.174 20 C 0.083 3.917 21 N -0.493 5.493 22 C 0.010 3.990 23 C -0.124 4.124 24 C -0.183 4.183 25 H 0.036 0.964 26 H 0.059 0.941 27 H 0.036 0.964 28 H -0.017 1.017 29 H -0.011 1.011 30 H 0.261 0.739 31 H 0.019 0.981 32 H 0.072 0.928 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.160 0.840 38 H 0.171 0.829 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 4.919 22.380 23.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 H 0.092 0.908 4 C -0.003 4.003 5 C -0.561 4.561 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.783 3.217 10 H -0.186 1.186 11 H -0.206 1.206 12 H -0.206 1.206 13 C -0.052 4.052 14 N -0.225 5.225 15 C -0.024 4.024 16 C -0.010 4.010 17 C -0.187 4.187 18 C -0.107 4.107 19 C -0.194 4.194 20 C -0.074 4.074 21 N -0.203 5.203 22 C -0.099 4.099 23 C -0.162 4.162 24 C -0.221 4.221 25 H 0.055 0.945 26 H 0.078 0.922 27 H 0.055 0.945 28 H 0.001 0.999 29 H 0.007 0.993 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.091 0.909 33 H 0.063 0.937 34 H 0.115 0.885 35 H 0.158 0.842 36 H 0.175 0.825 37 H 0.178 0.822 38 H 0.188 0.812 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.788 5.242 22.003 23.348 hybrid contribution 0.224 -0.537 -0.958 1.121 sum -5.564 4.704 21.045 22.271 Atomic orbital electron populations 1.21455 0.95043 1.00274 0.99959 1.21289 0.96353 0.99965 0.92457 0.90829 1.19005 0.93892 0.94624 0.92817 1.21644 1.34031 1.08408 0.92001 0.92205 1.25921 0.95373 0.96089 1.02548 1.70105 1.40497 1.22994 1.24095 0.85496 0.78033 0.78961 0.79173 1.18585 1.20642 1.20584 1.22063 0.97031 0.96807 0.89309 1.61714 1.57106 1.02645 1.00988 1.20951 0.97242 0.97071 0.87091 1.21001 0.93424 0.92087 0.94536 1.22126 0.95200 1.02320 0.99022 1.21915 1.00062 0.95154 0.93569 1.22443 0.97538 0.97478 1.01931 1.23147 0.92220 0.98974 0.93041 1.67460 1.35995 1.09965 1.06850 1.22223 0.94862 0.86566 1.06229 1.22679 1.00111 0.98414 0.94951 1.23259 1.04071 1.01059 0.93668 0.94453 0.92222 0.94501 0.99872 0.99292 0.93037 0.96247 0.90925 0.93678 0.88460 0.84234 0.82550 0.82239 0.81173 0.90666 0.90279 0.88202 0.88519 0.88536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.27 8.22 71.98 0.59 -3.68 16 2 C -0.08 -3.41 1.85 -10.79 -0.02 -3.43 16 3 H 0.07 3.09 4.51 -2.38 -0.01 3.08 16 4 C 0.03 1.82 4.45 29.85 0.13 1.95 16 5 C -0.52 -29.80 8.41 25.60 0.22 -29.59 16 6 H 0.06 3.30 7.06 -2.91 -0.02 3.28 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 8 N -0.94 -57.71 13.29 21.45 0.28 -57.42 16 9 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 13 C 0.08 2.66 4.33 86.30 0.37 3.03 16 14 N -0.50 -15.10 4.01 -875.54 -3.51 -18.61 16 15 C 0.10 2.72 5.32 85.56 0.46 3.17 16 16 C 0.13 3.07 5.84 42.55 0.25 3.32 16 17 C -0.17 -3.36 9.72 22.36 0.22 -3.15 16 18 C -0.08 -1.27 10.18 22.47 0.23 -1.04 16 19 C -0.17 -2.51 10.11 22.36 0.23 -2.29 16 20 C 0.08 1.51 11.18 84.67 0.95 2.45 16 21 N -0.49 -11.79 8.77 -183.89 -1.61 -13.40 16 22 C 0.01 0.30 4.40 44.92 0.20 0.50 16 23 C -0.12 -3.30 8.90 30.62 0.27 -3.02 16 24 C -0.18 -5.51 8.22 30.62 0.25 -5.26 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 2.08 7.25 -2.39 -0.02 2.06 16 27 H 0.04 1.52 6.95 -2.38 -0.02 1.51 16 28 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 29 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.02 0.72 8.12 -2.39 -0.02 0.70 16 32 H 0.07 2.48 7.83 -2.39 -0.02 2.47 16 33 H 0.04 1.22 7.99 -2.39 -0.02 1.20 16 34 H 0.10 2.25 7.62 -2.39 -0.02 2.24 16 35 H 0.14 2.51 8.06 -2.91 -0.02 2.48 16 36 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 39 H 0.08 2.32 8.13 -2.39 -0.02 2.30 16 40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.10 3.24 5.33 -2.39 -0.01 3.23 16 Total: -1.00 -66.58 343.70 2.95 -63.63 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.97 Total: 15.50 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 4.80 Total: -36.69 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -4.84 Total: -89.44 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -66.58 2.95 -63.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.944 kcal (2) G-P(sol) polarization free energy of solvation -66.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds