Wall clock time and date at job start Mon Mar 30 2020 01:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46854 * 2 1 4 4 C 1.53005 * 109.47404 * 119.99618 * 2 1 3 5 5 C 1.50701 * 109.47079 * 295.00407 * 4 2 1 6 6 H 1.07997 * 119.99742 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99803 * 180.27318 * 5 4 2 8 8 N 1.31517 * 120.00048 * 359.72459 * 7 5 4 9 9 Si 1.86798 * 119.99879 * 179.72342 * 7 5 4 10 10 H 1.48498 * 109.47105 * 60.00165 * 9 7 5 11 11 H 1.48502 * 109.46794 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47348 * 300.00044 * 9 7 5 13 13 C 1.53003 * 109.47332 * 240.00166 * 2 1 3 14 14 N 1.46902 * 109.46921 * 178.35782 * 13 2 1 15 15 C 1.46895 * 110.99527 * 163.15174 * 14 13 2 16 16 C 1.50708 * 109.47001 * 196.11981 * 15 14 13 17 17 C 1.38220 * 119.61646 * 95.64339 * 16 15 14 18 18 C 1.38636 * 119.15898 * 179.75529 * 17 16 15 19 19 C 1.38668 * 118.41785 * 0.50533 * 18 17 16 20 20 C 1.38189 * 119.16496 * 359.73577 * 19 18 17 21 21 N 1.31855 * 119.61463 * 275.91494 * 16 15 14 22 22 C 1.46898 * 110.99673 * 287.10053 * 14 13 2 23 23 C 1.53005 * 117.49463 * 143.74591 * 22 14 13 24 24 C 1.53001 * 117.49888 * 75.08789 * 22 14 13 25 25 H 1.09001 * 109.46663 * 176.26503 * 1 2 3 26 26 H 1.09005 * 109.47242 * 296.26324 * 1 2 3 27 27 H 1.08994 * 109.47569 * 56.26882 * 1 2 3 28 28 H 1.08999 * 109.47115 * 174.99845 * 4 2 1 29 29 H 1.09001 * 109.46361 * 55.00146 * 4 2 1 30 30 H 0.96999 * 119.99959 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.46679 * 298.35504 * 13 2 1 32 32 H 1.08996 * 109.46771 * 58.35636 * 13 2 1 33 33 H 1.09003 * 109.47693 * 316.11860 * 15 14 13 34 34 H 1.09000 * 109.47543 * 76.12298 * 15 14 13 35 35 H 1.08001 * 120.42293 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.78934 * 180.26234 * 18 17 16 37 37 H 1.08000 * 120.41864 * 179.70741 * 19 18 17 38 38 H 1.07998 * 119.61675 * 179.97438 * 20 19 18 39 39 H 1.09001 * 115.55503 * 289.41443 * 22 14 13 40 40 H 1.09001 * 117.49965 * 359.97438 * 23 22 14 41 41 H 1.09002 * 117.50027 * 145.02087 * 23 22 14 42 42 H 1.09000 * 117.49831 * 214.97649 * 24 22 14 43 43 H 1.09001 * 117.49620 * 359.97241 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9977 -0.3989 3.7280 8 7 2.6810 -1.5159 3.8509 9 14 1.5102 0.5699 5.2489 10 1 0.0305 0.6772 5.3142 11 1 2.0104 -0.1270 6.4611 12 1 2.1025 1.9299 5.1805 13 6 2.0401 -0.7212 -1.2493 14 7 3.5085 -0.6869 -1.2692 15 6 4.0457 -1.6839 -2.2048 16 6 5.5095 -1.9020 -1.9206 17 6 5.8990 -2.9520 -1.1105 18 6 7.2484 -3.1470 -0.8595 19 6 8.1589 -2.2683 -1.4267 20 6 7.6947 -1.2380 -2.2221 21 7 6.4035 -1.0858 -2.4433 22 6 3.9992 0.6589 -1.5950 23 6 5.2729 1.1352 -0.8938 24 6 3.9162 1.7251 -0.5009 25 1 -0.3633 -1.0255 -0.0669 26 1 -0.3634 0.4548 0.9216 27 1 -0.3634 0.5706 -0.8546 28 1 3.1264 -0.7994 1.2056 29 1 1.6054 -1.7197 1.2952 30 1 2.9314 -1.8369 4.7314 31 1 1.7010 -1.7570 -1.2346 32 1 1.6529 -0.2246 -2.1389 33 1 3.5078 -2.6240 -2.0824 34 1 3.9235 -1.3258 -3.2270 35 1 5.1617 -3.6143 -0.6814 36 1 7.5823 -3.9616 -0.2339 37 1 9.2175 -2.3872 -1.2487 38 1 8.3973 -0.5491 -2.6672 39 1 3.8410 0.9806 -2.6243 40 1 5.7465 0.4503 -0.1905 41 1 5.9525 1.7707 -1.4617 42 1 3.7037 2.7484 -0.8105 43 1 3.4970 1.4281 0.4605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602667487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:59 Heat of formation + Delta-G solvation = 60.228566 kcal Electronic energy + Delta-G solvation = -21698.848273 eV Core-core repulsion = 18744.704873 eV Total energy + Delta-G solvation = -2954.143400 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.07820 -38.23153 -34.89960 -33.87789 -32.32212 -32.05321 -30.81601 -27.03822 -26.45463 -24.37564 -23.29912 -22.66261 -22.01839 -21.65447 -20.02138 -18.81477 -16.68040 -16.28446 -16.06623 -15.58258 -15.14688 -14.78448 -14.75270 -14.29396 -13.59403 -13.38103 -13.12589 -12.93216 -12.55194 -12.48804 -12.03430 -11.69037 -11.64779 -11.35504 -11.22590 -10.89643 -10.79680 -10.73424 -10.32981 -10.16354 -9.98870 -9.65223 -9.56055 -9.35899 -9.24024 -8.95393 -8.85174 -8.74946 -8.20867 -7.77731 -5.85930 -3.85906 1.27588 1.47400 3.39352 3.43833 3.46262 3.83679 4.36321 4.39820 4.53223 4.56198 4.87562 4.96976 5.22704 5.29725 5.47619 5.48353 5.50200 5.54016 5.62714 5.71120 5.77738 5.88340 5.92101 6.02400 6.12570 6.17463 6.21679 6.31412 6.32708 6.37772 6.43481 6.58173 6.64356 6.86236 6.90358 7.07148 7.13315 7.37794 7.54932 7.65093 7.89660 8.12297 8.20194 8.25923 8.60998 9.22275 9.76113 11.25007 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.005499 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.212328 B = 5090.497026 C = 5727.921850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.093 4.093 3 H 0.070 0.930 4 C 0.038 3.962 5 C -0.512 4.512 6 H 0.051 0.949 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.883 3.117 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.279 1.279 13 C 0.069 3.931 14 N -0.494 5.494 15 C 0.107 3.893 16 C 0.147 3.853 17 C -0.148 4.148 18 C -0.078 4.078 19 C -0.181 4.181 20 C 0.093 3.907 21 N -0.470 5.470 22 C 0.018 3.982 23 C -0.148 4.148 24 C -0.176 4.176 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.027 0.973 28 H 0.033 0.967 29 H 0.006 0.994 30 H 0.257 0.743 31 H 0.066 0.934 32 H 0.020 0.980 33 H 0.086 0.914 34 H 0.047 0.953 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.149 0.851 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.395 -1.034 -13.170 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.111 4.111 3 H 0.088 0.912 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.069 0.931 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.711 3.289 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.058 4.058 14 N -0.218 5.218 15 C -0.021 4.021 16 C 0.009 3.991 17 C -0.169 4.169 18 C -0.104 4.104 19 C -0.202 4.202 20 C -0.064 4.064 21 N -0.180 5.180 22 C -0.091 4.091 23 C -0.186 4.186 24 C -0.213 4.213 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.153 0.847 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.100 0.900 42 H 0.102 0.898 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 7.332 -0.593 -13.104 15.027 hybrid contribution -0.109 -0.075 0.800 0.811 sum 7.224 -0.668 -12.304 14.283 Atomic orbital electron populations 1.21723 0.96706 1.00289 1.00445 1.21438 0.93994 1.00313 0.95397 0.91230 1.19013 0.97331 0.94374 0.89198 1.21288 1.34156 1.08171 0.91422 0.93092 1.24969 0.95509 0.95062 0.98771 1.69966 1.39153 1.21256 1.23070 0.86813 0.78751 0.80285 0.83027 1.20471 1.21525 1.20443 1.22237 0.85142 1.00519 0.97859 1.61640 1.08925 1.02756 1.48454 1.20913 0.89380 0.96963 0.94869 1.21060 0.95338 0.90174 0.92515 1.21994 0.96655 0.99652 0.98570 1.21554 0.93196 0.98444 0.97192 1.22057 1.00642 0.97319 1.00144 1.22624 0.92169 0.95999 0.95620 1.67482 1.02108 1.26214 1.22160 1.22138 1.02768 0.89526 0.94630 1.22747 0.90481 1.02628 1.02756 1.23355 1.00535 0.96156 1.01292 0.93962 0.91700 0.95388 0.94893 0.97538 0.93328 0.91603 0.96151 0.89527 0.93526 0.84714 0.85157 0.85409 0.83400 0.90703 0.89331 0.89952 0.89772 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.06 37.16 0.34 -2.19 16 2 C -0.09 -1.89 1.91 -90.62 -0.17 -2.06 16 3 H 0.07 1.44 4.84 -51.92 -0.25 1.19 16 4 C 0.04 0.96 3.93 -27.88 -0.11 0.85 16 5 C -0.51 -14.26 8.35 -34.44 -0.29 -14.55 16 6 H 0.05 1.39 7.07 -52.49 -0.37 1.02 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 9 Si 0.88 21.91 29.54 -169.99 -5.02 16.89 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 C 0.07 1.21 4.41 -3.82 -0.02 1.19 16 14 N -0.49 -8.54 3.75 -228.08 -0.86 -9.40 16 15 C 0.11 1.60 5.30 -4.97 -0.03 1.57 16 16 C 0.15 2.22 5.69 -82.59 -0.47 1.75 16 17 C -0.15 -2.11 9.72 -39.44 -0.38 -2.50 16 18 C -0.08 -0.96 10.18 -39.28 -0.40 -1.36 16 19 C -0.18 -2.07 10.11 -39.44 -0.40 -2.46 16 20 C 0.09 1.15 11.18 -17.55 -0.20 0.96 16 21 N -0.47 -6.91 8.62 -9.47 -0.08 -6.99 16 22 C 0.02 0.30 4.33 -67.71 -0.29 0.01 16 23 C -0.15 -2.47 8.69 -26.69 -0.23 -2.70 16 24 C -0.18 -3.05 8.60 -26.69 -0.23 -3.28 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 1.33 6.85 -51.93 -0.36 0.97 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.03 0.91 7.46 -51.93 -0.39 0.53 16 29 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.07 1.12 7.70 -51.93 -0.40 0.72 16 32 H 0.02 0.33 8.04 -51.93 -0.42 -0.09 16 33 H 0.09 1.18 7.61 -51.93 -0.40 0.78 16 34 H 0.05 0.66 8.05 -51.93 -0.42 0.24 16 35 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.12 2.60 5.96 -51.93 -0.31 2.29 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -30.78 344.57 -10.10 -40.88 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.09 Total: 2.94 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.98 Total: -23.23 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: -0.20 Total: -42.68 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.78 -10.10 -40.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.110 kcal (2) G-P(sol) polarization free energy of solvation -30.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds