Wall clock time and date at job start Mon Mar 30 2020 01:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.46854 * 2 1 4 4 C 1.53005 * 109.47404 * 119.99618 * 2 1 3 5 5 C 1.50701 * 109.47079 * 295.00407 * 4 2 1 6 6 H 1.07997 * 119.99742 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99803 * 180.27318 * 5 4 2 8 8 N 1.31517 * 120.00048 * 359.72459 * 7 5 4 9 9 Si 1.86798 * 119.99879 * 179.72342 * 7 5 4 10 10 H 1.48498 * 109.47105 * 60.00165 * 9 7 5 11 11 H 1.48502 * 109.46794 * 180.02562 * 9 7 5 12 12 H 1.48492 * 109.47348 * 300.00044 * 9 7 5 13 13 C 1.53003 * 109.47332 * 240.00166 * 2 1 3 14 14 N 1.46902 * 109.46921 * 178.35782 * 13 2 1 15 15 C 1.46895 * 110.99527 * 163.15174 * 14 13 2 16 16 C 1.50708 * 109.47001 * 196.11981 * 15 14 13 17 17 C 1.38220 * 119.61646 * 95.64339 * 16 15 14 18 18 C 1.38636 * 119.15898 * 179.75529 * 17 16 15 19 19 C 1.38668 * 118.41785 * 0.50533 * 18 17 16 20 20 C 1.38189 * 119.16496 * 359.73577 * 19 18 17 21 21 N 1.31855 * 119.61463 * 275.91494 * 16 15 14 22 22 C 1.46898 * 110.99673 * 287.10053 * 14 13 2 23 23 C 1.53005 * 117.49463 * 143.74591 * 22 14 13 24 24 C 1.53001 * 117.49888 * 75.08789 * 22 14 13 25 25 H 1.09001 * 109.46663 * 176.26503 * 1 2 3 26 26 H 1.09005 * 109.47242 * 296.26324 * 1 2 3 27 27 H 1.08994 * 109.47569 * 56.26882 * 1 2 3 28 28 H 1.08999 * 109.47115 * 174.99845 * 4 2 1 29 29 H 1.09001 * 109.46361 * 55.00146 * 4 2 1 30 30 H 0.96999 * 119.99959 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.46679 * 298.35504 * 13 2 1 32 32 H 1.08996 * 109.46771 * 58.35636 * 13 2 1 33 33 H 1.09003 * 109.47693 * 316.11860 * 15 14 13 34 34 H 1.09000 * 109.47543 * 76.12298 * 15 14 13 35 35 H 1.08001 * 120.42293 * 359.97438 * 17 16 15 36 36 H 1.08002 * 120.78934 * 180.26234 * 18 17 16 37 37 H 1.08000 * 120.41864 * 179.70741 * 19 18 17 38 38 H 1.07998 * 119.61675 * 179.97438 * 20 19 18 39 39 H 1.09001 * 115.55503 * 289.41443 * 22 14 13 40 40 H 1.09001 * 117.49965 * 359.97438 * 23 22 14 41 41 H 1.09002 * 117.50027 * 145.02087 * 23 22 14 42 42 H 1.09000 * 117.49831 * 214.97649 * 24 22 14 43 43 H 1.09001 * 117.49620 * 359.97241 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9977 -0.3989 3.7280 8 7 2.6810 -1.5159 3.8509 9 14 1.5102 0.5699 5.2489 10 1 0.0305 0.6772 5.3142 11 1 2.0104 -0.1270 6.4611 12 1 2.1025 1.9299 5.1805 13 6 2.0401 -0.7212 -1.2493 14 7 3.5085 -0.6869 -1.2692 15 6 4.0457 -1.6839 -2.2048 16 6 5.5095 -1.9020 -1.9206 17 6 5.8990 -2.9520 -1.1105 18 6 7.2484 -3.1470 -0.8595 19 6 8.1589 -2.2683 -1.4267 20 6 7.6947 -1.2380 -2.2221 21 7 6.4035 -1.0858 -2.4433 22 6 3.9992 0.6589 -1.5950 23 6 5.2729 1.1352 -0.8938 24 6 3.9162 1.7251 -0.5009 25 1 -0.3633 -1.0255 -0.0669 26 1 -0.3634 0.4548 0.9216 27 1 -0.3634 0.5706 -0.8546 28 1 3.1264 -0.7994 1.2056 29 1 1.6054 -1.7197 1.2952 30 1 2.9314 -1.8369 4.7314 31 1 1.7010 -1.7570 -1.2346 32 1 1.6529 -0.2246 -2.1389 33 1 3.5078 -2.6240 -2.0824 34 1 3.9235 -1.3258 -3.2270 35 1 5.1617 -3.6143 -0.6814 36 1 7.5823 -3.9616 -0.2339 37 1 9.2175 -2.3872 -1.2487 38 1 8.3973 -0.5491 -2.6672 39 1 3.8410 0.9806 -2.6243 40 1 5.7465 0.4503 -0.1905 41 1 5.9525 1.7707 -1.4617 42 1 3.7037 2.7484 -0.8105 43 1 3.4970 1.4281 0.4605 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602667487.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:58 Heat of formation + Delta-G solvation = 43.413386 kcal Electronic energy + Delta-G solvation = -21699.577434 eV Core-core repulsion = 18744.704873 eV Total energy + Delta-G solvation = -2954.872561 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.12366 -39.57105 -36.55878 -35.25077 -34.12639 -33.21321 -32.04149 -28.99645 -27.75823 -25.81376 -24.63309 -24.24291 -23.31986 -22.85868 -21.34434 -20.45680 -18.42427 -17.68180 -17.15153 -16.84645 -16.52175 -16.34050 -15.99828 -15.90228 -15.01128 -14.66835 -14.48041 -14.17894 -14.00536 -13.83317 -13.73513 -13.29424 -12.92413 -12.82927 -12.75220 -12.65402 -12.39691 -12.27556 -12.16274 -11.92261 -11.55650 -11.11017 -10.92852 -10.80882 -10.73624 -10.59274 -10.41726 -10.26654 -9.83740 -9.08513 -8.07974 -6.15136 0.26873 0.47615 1.40183 1.42444 1.49489 2.46179 2.72748 3.03729 3.23980 3.25320 3.49652 3.81934 4.09181 4.15764 4.17824 4.18560 4.27481 4.30806 4.34190 4.50455 4.55411 4.62795 4.68769 4.78181 4.84239 4.87329 4.91487 4.92928 4.94289 5.06210 5.19530 5.33794 5.37524 5.38606 5.46020 5.50825 5.57302 5.73648 5.89050 6.01389 6.09908 6.27277 6.33839 6.44067 7.03604 7.17923 7.51333 9.03041 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017151 B = 0.005499 C = 0.004887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.212328 B = 5090.497026 C = 5727.921850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.087 4.087 3 H 0.068 0.932 4 C 0.055 3.945 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.000 4.000 8 N -0.932 5.932 9 Si 0.950 3.050 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.271 1.271 13 C 0.076 3.924 14 N -0.518 5.518 15 C 0.110 3.890 16 C 0.128 3.872 17 C -0.172 4.172 18 C -0.085 4.085 19 C -0.175 4.175 20 C 0.085 3.915 21 N -0.487 5.487 22 C 0.027 3.973 23 C -0.138 4.138 24 C -0.182 4.182 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.000 1.000 29 H -0.026 1.026 30 H 0.257 0.743 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.162 0.838 38 H 0.177 0.823 39 H 0.092 0.908 40 H 0.057 0.943 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 0.157 -14.277 16.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.105 4.105 3 H 0.086 0.914 4 C 0.018 3.982 5 C -0.561 4.561 6 H 0.073 0.927 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.775 3.225 10 H -0.193 1.193 11 H -0.213 1.213 12 H -0.196 1.196 13 C -0.051 4.051 14 N -0.242 5.242 15 C -0.018 4.018 16 C -0.010 4.010 17 C -0.192 4.192 18 C -0.111 4.111 19 C -0.195 4.195 20 C -0.073 4.073 21 N -0.196 5.196 22 C -0.082 4.082 23 C -0.176 4.176 24 C -0.219 4.219 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.080 0.920 28 H 0.019 0.981 29 H -0.008 1.008 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.110 0.890 34 H 0.074 0.926 35 H 0.146 0.854 36 H 0.169 0.831 37 H 0.179 0.821 38 H 0.194 0.806 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.803 0.603 -14.221 16.232 hybrid contribution -0.168 -0.474 1.144 1.249 sum 7.634 0.129 -13.077 15.143 Atomic orbital electron populations 1.21648 0.95344 1.00799 1.00876 1.21293 0.95104 0.99763 0.94365 0.91412 1.18751 0.95036 0.93021 0.91408 1.21689 1.33603 1.08290 0.92506 0.92718 1.25835 0.95577 0.96065 1.02191 1.70115 1.40525 1.22995 1.23730 0.85738 0.78859 0.78907 0.78954 1.19337 1.21309 1.19620 1.22079 0.85571 1.00349 0.97052 1.61544 1.08857 1.03695 1.50138 1.20918 0.89669 0.96514 0.94683 1.21077 0.95498 0.90905 0.93519 1.22112 0.97761 1.00032 0.99313 1.21890 0.92628 0.99303 0.97298 1.22435 1.02155 0.96157 0.98713 1.23192 0.91876 0.96685 0.95515 1.67467 1.03081 1.26395 1.22700 1.22189 1.02138 0.88941 0.94897 1.22617 0.90506 1.02186 1.02285 1.23225 1.01074 0.97691 0.99889 0.93844 0.93749 0.91975 0.98127 1.00775 0.93403 0.91593 0.93675 0.89036 0.92568 0.85421 0.83149 0.82083 0.80580 0.89012 0.92384 0.87708 0.87332 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.06 71.98 0.65 -4.10 16 2 C -0.09 -3.53 1.91 -10.79 -0.02 -3.55 16 3 H 0.07 2.81 4.84 -2.38 -0.01 2.80 16 4 C 0.05 2.91 3.93 29.85 0.12 3.03 16 5 C -0.52 -29.84 8.35 25.60 0.21 -29.62 16 6 H 0.05 3.02 7.07 -2.91 -0.02 2.99 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 9 Si 0.95 45.47 29.54 68.60 2.03 47.50 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 13 C 0.08 2.62 4.41 86.30 0.38 3.00 16 14 N -0.52 -17.95 3.75 -875.51 -3.29 -21.23 16 15 C 0.11 3.27 5.30 85.56 0.45 3.72 16 16 C 0.13 3.85 5.69 42.55 0.24 4.09 16 17 C -0.17 -5.01 9.72 22.36 0.22 -4.79 16 18 C -0.09 -2.05 10.18 22.47 0.23 -1.82 16 19 C -0.17 -3.63 10.11 22.36 0.23 -3.40 16 20 C 0.08 1.94 11.18 84.67 0.95 2.88 16 21 N -0.49 -13.82 8.62 -183.88 -1.58 -15.40 16 22 C 0.03 0.87 4.33 44.92 0.19 1.06 16 23 C -0.14 -4.53 8.69 30.62 0.27 -4.27 16 24 C -0.18 -6.22 8.60 30.62 0.26 -5.96 16 25 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.04 1.79 6.85 -2.38 -0.02 1.77 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.00 0.02 7.46 -2.39 -0.02 0.00 16 29 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 30 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 31 H 0.07 2.24 7.70 -2.39 -0.02 2.22 16 32 H 0.05 1.34 8.04 -2.39 -0.02 1.32 16 33 H 0.09 2.53 7.61 -2.39 -0.02 2.51 16 34 H 0.06 1.53 8.05 -2.39 -0.02 1.52 16 35 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 36 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 37 H 0.16 2.20 8.06 -2.91 -0.02 2.18 16 38 H 0.18 2.87 8.06 -2.91 -0.02 2.85 16 39 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 42 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.08 3.62 5.96 -2.39 -0.01 3.61 16 Total: -1.00 -68.23 344.57 3.25 -64.98 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.96 Total: 21.21 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 4.84 Total: -39.26 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -4.59 Total: -94.43 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -68.23 3.25 -64.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602667487.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.393 kcal (2) G-P(sol) polarization free energy of solvation -68.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds