Wall clock time and date at job start Mon Mar 30 2020 01:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36347 * 125.63077 * 2 1 4 4 C 1.34859 * 108.21529 * 180.14711 * 3 2 1 5 5 C 1.40892 * 107.41375 * 359.63916 * 4 3 2 6 6 C 1.34847 * 107.41976 * 0.22385 * 5 4 3 7 7 C 1.50702 * 125.88894 * 180.02562 * 6 5 4 8 8 H 1.08994 * 110.33271 * 117.23211 * 7 6 5 9 9 C 1.54905 * 110.37244 * 239.60223 * 7 6 5 10 10 C 1.55148 * 101.65294 * 155.89761 * 9 7 6 11 11 C 1.54313 * 103.01890 * 324.34761 * 10 9 7 12 12 N 1.47447 * 107.23259 * 22.28253 * 11 10 9 13 13 C 1.46902 * 110.99897 * 123.26165 * 12 11 10 14 14 C 1.52999 * 109.47539 * 61.74969 * 13 12 11 15 15 C 1.50704 * 115.54631 * 66.81866 * 14 13 12 16 16 H 1.07993 * 119.99716 * 144.85611 * 15 14 13 17 17 C 1.37879 * 119.99722 * 324.84844 * 15 14 13 18 18 N 1.31518 * 120.00248 * 322.80536 * 17 15 14 19 19 Si 1.86797 * 119.99614 * 142.81112 * 17 15 14 20 20 H 1.48502 * 109.47490 * 59.99747 * 19 17 15 21 21 H 1.48502 * 109.47278 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47059 * 299.99345 * 19 17 15 23 23 C 1.52993 * 117.49843 * 281.14542 * 14 13 12 24 24 C 1.52997 * 117.49986 * 212.48116 * 14 13 12 25 25 H 1.09003 * 109.46623 * 270.25549 * 1 2 3 26 26 H 1.08995 * 109.47048 * 30.26046 * 1 2 3 27 27 H 1.09003 * 109.46878 * 150.26273 * 1 2 3 28 28 H 1.07994 * 125.89319 * 0.03368 * 3 2 1 29 29 H 1.07990 * 126.29013 * 179.89759 * 4 3 2 30 30 H 1.08004 * 126.28597 * 180.25042 * 5 4 3 31 31 H 1.09003 * 110.99316 * 273.99220 * 9 7 6 32 32 H 1.09005 * 110.99339 * 37.81133 * 9 7 6 33 33 H 1.08997 * 110.70750 * 205.96241 * 10 9 7 34 34 H 1.09001 * 110.85214 * 82.80002 * 10 9 7 35 35 H 1.08995 * 109.89332 * 262.87413 * 11 10 9 36 36 H 1.09000 * 110.02224 * 141.76113 * 11 10 9 37 37 H 1.09005 * 109.47131 * 181.75933 * 13 12 11 38 38 H 1.09011 * 109.46807 * 301.74967 * 13 12 11 39 39 H 0.97000 * 119.99750 * 172.94820 * 18 17 15 40 40 H 1.09001 * 117.50339 * 359.97438 * 23 14 13 41 41 H 1.09006 * 117.49959 * 145.02512 * 23 14 13 42 42 H 1.08995 * 117.50118 * 214.98131 * 24 14 13 43 43 H 1.09006 * 117.49885 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2593 1.1082 0.0000 4 6 3.5461 0.7046 -0.0033 5 6 3.5461 -0.7043 0.0031 6 6 2.2594 -1.1080 0.0050 7 6 1.7820 -2.5374 0.0120 8 1 1.2184 -2.7439 0.9217 9 6 0.9143 -2.8223 -1.2392 10 6 1.0662 -4.3596 -1.3825 11 6 2.5246 -4.6073 -0.9431 12 7 2.9284 -3.4635 -0.1047 13 6 3.3782 -3.9141 1.2192 14 6 4.6031 -4.8172 1.0617 15 6 5.8483 -4.1401 0.5496 16 1 6.8183 -4.4505 0.9087 17 6 5.7490 -3.1244 -0.3776 18 7 4.8395 -3.1860 -1.3256 19 14 6.9063 -1.6609 -0.2871 20 1 8.3091 -2.1303 -0.4180 21 1 6.5962 -0.7157 -1.3897 22 1 6.7340 -0.9735 1.0178 23 6 4.3619 -6.2671 0.6371 24 6 4.7808 -5.9498 2.0748 25 1 -0.3633 0.0046 1.0277 26 1 -0.3633 0.8876 -0.5179 27 1 -0.3633 -0.8924 -0.5098 28 1 1.9171 2.1325 0.0005 29 1 4.4165 1.3438 -0.0057 30 1 4.4167 -1.3435 0.0063 31 1 -0.1258 -2.5473 -1.0640 32 1 1.3105 -2.3076 -2.1146 33 1 0.9182 -4.6667 -2.4178 34 1 0.3715 -4.8812 -0.7242 35 1 3.1701 -4.6712 -1.8190 36 1 2.5891 -5.5303 -0.3670 37 1 3.6406 -3.0487 1.8277 38 1 2.5767 -4.4705 1.7053 39 1 4.7007 -2.4278 -1.9145 40 1 3.3305 -6.5778 0.4704 41 1 5.1040 -6.7315 -0.0123 42 1 5.7982 -6.2055 2.3706 43 1 4.0247 -6.0518 2.8534 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602786106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:17 Heat of formation + Delta-G solvation = 119.763351 kcal Electronic energy + Delta-G solvation = -23090.990251 eV Core-core repulsion = 20139.428473 eV Total energy + Delta-G solvation = -2951.561778 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.05772 -39.92244 -37.54752 -34.23123 -33.51890 -32.13909 -31.38545 -28.00332 -27.40476 -27.00109 -26.00516 -23.09245 -22.27904 -21.95105 -21.06491 -20.50644 -19.68594 -17.91712 -17.85560 -16.70317 -16.42085 -15.96858 -15.75987 -15.43940 -14.99584 -14.56228 -14.24081 -14.14681 -13.84006 -13.75762 -13.48322 -13.21304 -12.99230 -12.93494 -12.80030 -12.61825 -12.28977 -12.24436 -12.08996 -12.01201 -11.86293 -11.55817 -11.29677 -11.03921 -10.61610 -10.28830 -9.72590 -9.30896 -8.71006 -8.30324 -7.95674 -5.66870 1.43511 1.48752 1.52482 1.57245 2.20313 2.28673 2.63748 3.15950 3.36907 3.77699 3.90705 3.98618 4.05720 4.24101 4.30424 4.35555 4.41209 4.47906 4.55211 4.55807 4.65613 4.77171 4.78676 4.82420 4.91026 4.93281 4.99336 5.02636 5.07641 5.15704 5.22877 5.31032 5.47560 5.58414 5.61344 5.74850 5.77581 5.80154 6.03503 6.27858 6.44616 6.63871 6.72225 6.76869 6.87670 7.11344 7.75788 9.01478 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.009974 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.955491 B = 2806.495286 C = 3941.640164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.450 5.450 3 C -0.009 4.009 4 C -0.250 4.250 5 C -0.219 4.219 6 C 0.028 3.972 7 C 0.131 3.869 8 H 0.045 0.955 9 C -0.105 4.105 10 C -0.136 4.136 11 C 0.058 3.942 12 N -0.457 5.457 13 C 0.113 3.887 14 C 0.045 3.955 15 C -0.568 4.568 16 H 0.028 0.972 17 C 0.098 3.902 18 N -0.733 5.733 19 Si 0.852 3.148 20 H -0.296 1.296 21 H -0.286 1.286 22 H -0.287 1.287 23 C -0.199 4.199 24 C -0.205 4.205 25 H 0.079 0.921 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.194 0.806 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.009 0.991 39 H 0.256 0.744 40 H 0.084 0.916 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.019 4.193 -0.001 15.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.127 5.127 3 C -0.139 4.139 4 C -0.275 4.275 5 C -0.243 4.243 6 C -0.084 4.084 7 C 0.021 3.979 8 H 0.063 0.937 9 C -0.143 4.143 10 C -0.175 4.175 11 C -0.069 4.069 12 N -0.179 5.179 13 C -0.015 4.015 14 C 0.044 3.956 15 C -0.601 4.601 16 H 0.046 0.954 17 C -0.115 4.115 18 N -0.359 5.359 19 Si 0.679 3.321 20 H -0.223 1.223 21 H -0.212 1.212 22 H -0.214 1.214 23 C -0.236 4.236 24 C -0.243 4.243 25 H 0.097 0.903 26 H 0.123 0.877 27 H 0.109 0.891 28 H 0.211 0.789 29 H 0.137 0.863 30 H 0.150 0.850 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.070 0.930 37 H 0.053 0.947 38 H 0.027 0.973 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.061 4.468 -0.516 15.719 hybrid contribution 0.998 0.561 0.669 1.326 sum -14.063 5.029 0.152 14.936 Atomic orbital electron populations 1.22372 0.75465 1.05793 1.04103 1.44013 1.07149 1.04717 1.56789 1.22019 0.89497 0.92298 1.10102 1.21101 0.97211 0.95307 1.13927 1.21430 0.97898 0.95164 1.09852 1.20215 0.90051 0.88824 1.09278 1.20913 0.91450 0.88191 0.97360 0.93723 1.22651 0.98881 0.96359 0.96389 1.22843 0.96917 0.95480 1.02223 1.22825 0.93639 0.92275 0.98177 1.63532 1.29297 1.14285 1.10811 1.21587 0.93881 0.95860 0.90157 1.18865 0.94245 0.85758 0.96736 1.20002 0.90620 1.22889 1.26636 0.95411 1.24563 0.95530 0.97707 0.93724 1.70383 1.28653 1.27853 1.09019 0.87449 0.81826 0.85332 0.77519 1.22301 1.21213 1.21379 1.23078 0.99038 1.05451 0.96039 1.22953 1.00295 1.08659 0.92435 0.90252 0.87671 0.89087 0.78868 0.86287 0.85049 0.88795 0.92336 0.90253 0.90795 0.91626 0.93045 0.94679 0.97289 0.93290 0.89748 0.92188 0.91372 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.15 10.88 127.77 1.39 2.54 16 2 N -0.45 -13.51 3.15 -533.24 -1.68 -15.19 16 3 C -0.01 -0.28 11.44 83.21 0.95 0.67 16 4 C -0.25 -9.95 10.86 22.14 0.24 -9.71 16 5 C -0.22 -9.98 9.82 22.14 0.22 -9.76 16 6 C 0.03 1.08 6.18 41.08 0.25 1.34 16 7 C 0.13 4.67 2.64 44.64 0.12 4.79 16 8 H 0.05 1.54 7.80 -2.39 -0.02 1.52 16 9 C -0.10 -3.00 5.64 31.98 0.18 -2.82 16 10 C -0.14 -3.91 6.94 31.78 0.22 -3.69 16 11 C 0.06 2.25 5.39 86.64 0.47 2.72 16 12 N -0.46 -19.29 1.03 -864.98 -0.89 -20.18 16 13 C 0.11 5.13 4.29 86.30 0.37 5.50 16 14 C 0.05 2.20 1.78 -52.93 -0.09 2.11 16 15 C -0.57 -32.11 8.84 25.60 0.23 -31.89 16 16 H 0.03 1.66 8.03 -2.91 -0.02 1.64 16 17 C 0.10 5.40 3.65 84.65 0.31 5.71 16 18 N -0.73 -38.70 7.73 21.45 0.17 -38.54 16 19 Si 0.85 44.63 27.25 68.60 1.87 46.50 16 20 H -0.30 -15.66 7.11 99.48 0.71 -14.96 16 21 H -0.29 -14.85 7.11 99.48 0.71 -14.15 16 22 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 23 C -0.20 -8.77 8.59 30.62 0.26 -8.51 16 24 C -0.21 -8.90 9.92 30.62 0.30 -8.59 16 25 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.09 1.52 5.16 -2.39 -0.01 1.51 16 28 H 0.19 4.13 8.06 -2.91 -0.02 4.11 16 29 H 0.12 4.60 8.06 -2.92 -0.02 4.58 16 30 H 0.13 6.75 1.98 -2.91 -0.01 6.75 16 31 H 0.09 1.98 6.32 -2.39 -0.02 1.97 16 32 H 0.06 1.89 8.05 -2.38 -0.02 1.87 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 2.95 6.93 -2.39 -0.02 2.94 16 36 H 0.05 2.01 4.02 -2.39 -0.01 2.00 16 37 H 0.03 1.73 8.14 -2.38 -0.02 1.71 16 38 H 0.01 0.38 8.07 -2.38 -0.02 0.36 16 39 H 0.26 13.62 7.98 -92.71 -0.74 12.88 16 40 H 0.08 3.36 5.98 -2.39 -0.01 3.34 16 41 H 0.06 2.82 8.14 -2.38 -0.02 2.80 16 42 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 43 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 Total: -1.00 -64.12 318.92 5.91 -58.21 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 1.02 Total: 18.79 kcal Atomic # 6 Polarization: -55.02 SS G_CDS: 5.42 Total: -49.60 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -2.40 Total: -73.90 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.87 Total: 46.50 kcal Total: -64.12 5.91 -58.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.975 kcal (2) G-P(sol) polarization free energy of solvation -64.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds