Wall clock time and date at job start Mon Mar 30 2020 01:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.46788 * 2 1 4 4 C 1.53002 * 109.47100 * 240.00114 * 2 1 3 5 5 C 1.50702 * 109.47207 * 64.99796 * 4 2 1 6 6 H 1.08002 * 119.99647 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99918 * 179.97438 * 5 4 2 8 8 N 1.31512 * 120.00165 * 179.73107 * 7 5 4 9 9 Si 1.86803 * 119.99977 * 0.02562 * 7 5 4 10 10 H 1.48493 * 109.47120 * 269.72505 * 9 7 5 11 11 H 1.48502 * 109.46967 * 29.72253 * 9 7 5 12 12 H 1.48499 * 109.46822 * 149.72440 * 9 7 5 13 13 C 1.53001 * 109.46823 * 119.99998 * 2 1 3 14 14 N 1.46897 * 109.46950 * 294.74526 * 13 2 1 15 15 C 1.46717 * 111.00135 * 301.07012 * 14 13 2 16 16 C 1.53385 * 108.24543 * 185.79473 * 15 14 13 17 17 N 1.46711 * 108.26348 * 66.82138 * 16 15 14 18 18 C 1.46900 * 110.99986 * 185.87340 * 17 16 15 19 19 C 1.39933 * 112.12542 * 310.64969 * 17 16 15 20 20 C 1.39219 * 117.92715 * 197.60204 * 19 17 16 21 21 C 1.38039 * 120.40049 * 180.28757 * 20 19 17 22 22 C 1.38256 * 120.02799 * 0.03010 * 21 20 19 23 23 C 1.38046 * 120.01614 * 359.83055 * 22 21 20 24 24 C 1.38957 * 122.50077 * 17.67797 * 19 17 16 25 25 H 1.09005 * 109.46996 * 294.72596 * 1 2 3 26 26 H 1.09009 * 109.46943 * 54.72318 * 1 2 3 27 27 H 1.08995 * 109.47568 * 174.72380 * 1 2 3 28 28 H 1.09005 * 109.46885 * 305.00298 * 4 2 1 29 29 H 1.09001 * 109.47117 * 185.00174 * 4 2 1 30 30 H 0.96992 * 120.00474 * 180.27739 * 8 7 5 31 31 H 1.08998 * 109.47134 * 54.74439 * 13 2 1 32 32 H 1.09000 * 109.46624 * 174.74624 * 13 2 1 33 33 H 1.08999 * 109.71140 * 305.48464 * 15 14 13 34 34 H 1.08997 * 109.70726 * 66.10871 * 15 14 13 35 35 H 1.09001 * 109.70458 * 186.51001 * 16 15 14 36 36 H 1.08996 * 109.70486 * 307.08107 * 16 15 14 37 37 H 1.08996 * 109.47544 * 67.10567 * 18 17 16 38 38 H 1.09002 * 109.47014 * 187.10940 * 18 17 16 39 39 H 1.09002 * 109.46699 * 307.11005 * 18 17 16 40 40 H 1.07994 * 119.79574 * 0.28446 * 20 19 17 41 41 H 1.07996 * 119.98864 * 180.02562 * 21 20 19 42 42 H 1.08001 * 119.99900 * 179.85337 * 22 21 20 43 43 H 1.08001 * 119.79905 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0571 -2.4766 6 1 1.0806 0.9746 -2.3756 7 6 1.9932 -0.4017 -3.7283 8 7 1.6408 0.2747 -4.7997 9 14 2.9636 -1.9883 -3.9028 10 1 4.4170 -1.6842 -3.8846 11 1 2.6339 -2.8967 -2.7752 12 1 2.6113 -2.6453 -5.1871 13 6 2.0400 -0.7213 1.2493 14 7 1.6565 0.0406 2.4453 15 6 2.2088 1.3992 2.4027 16 6 1.8961 2.0868 3.7377 17 7 2.6526 1.4055 4.7940 18 6 2.2916 1.9260 6.1194 19 6 2.4965 0.0159 4.7415 20 6 2.8354 -0.7215 5.8727 21 6 2.7071 -2.0960 5.8749 22 6 2.2402 -2.7491 4.7494 23 6 1.8986 -2.0267 3.6237 24 6 2.0223 -0.6401 3.6120 25 1 -0.3633 0.4299 0.9335 26 1 -0.3633 0.5936 -0.8390 27 1 -0.3634 -1.0232 -0.0945 28 1 1.6053 -1.7198 -1.2952 29 1 3.1263 -0.7995 -1.2056 30 1 1.8848 -0.0501 -5.6804 31 1 1.6018 -1.7181 1.2976 32 1 3.1259 -0.8035 1.2034 33 1 3.2880 1.3530 2.2569 34 1 1.7505 1.9568 1.5859 35 1 2.1934 3.1344 3.6900 36 1 0.8285 2.0170 3.9458 37 1 1.2602 1.6568 6.3470 38 1 2.9536 1.4962 6.8712 39 1 2.3932 3.0113 6.1235 40 1 3.2010 -0.2152 6.7537 41 1 2.9716 -2.6614 6.7562 42 1 2.1422 -3.8246 4.7508 43 1 1.5339 -2.5404 2.7465 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887672.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:26 Heat of formation + Delta-G solvation = 21.955524 kcal Electronic energy + Delta-G solvation = -21532.336643 eV Core-core repulsion = 18576.533600 eV Total energy + Delta-G solvation = -2955.803044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.91989 -38.63366 -37.71439 -36.06370 -34.14679 -31.53939 -30.96064 -30.26516 -29.00371 -26.88613 -25.65902 -24.77918 -24.37749 -22.26604 -20.76872 -20.40026 -18.93423 -18.50453 -17.38999 -17.21275 -16.46762 -15.97144 -15.81386 -15.49651 -15.26891 -15.11779 -14.87832 -14.58141 -14.39421 -13.98183 -13.71853 -13.51281 -13.26476 -12.97311 -12.86496 -12.78026 -12.70419 -12.48154 -12.25851 -12.04060 -11.83341 -11.71717 -11.43315 -11.30489 -11.10940 -10.87408 -10.74138 -10.57954 -9.15854 -8.29109 -8.26558 -6.28976 0.48497 0.49840 1.35413 1.37051 1.48553 2.37010 2.53129 2.80443 3.07654 3.08976 3.69099 3.70858 3.90828 4.12473 4.19598 4.22059 4.28912 4.36630 4.42712 4.45795 4.50732 4.56403 4.62060 4.69350 4.73812 4.83028 4.85095 4.89987 4.93310 5.03109 5.06349 5.11608 5.33076 5.35175 5.38998 5.48482 5.64357 5.69140 5.69643 5.81667 5.83077 6.08748 6.14789 6.33086 6.46176 6.78192 7.34713 8.90033 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.025925 B = 0.004402 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.797594 B = 6359.713860 C = 7034.548334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.070 4.070 3 H 0.057 0.943 4 C -0.005 4.005 5 C -0.517 4.517 6 H 0.037 0.963 7 C 0.004 3.996 8 N -0.952 5.952 9 Si 0.944 3.056 10 H -0.269 1.269 11 H -0.247 1.247 12 H -0.285 1.285 13 C 0.072 3.928 14 N -0.489 5.489 15 C 0.047 3.953 16 C 0.058 3.942 17 N -0.505 5.505 18 C 0.025 3.975 19 C 0.059 3.941 20 C -0.138 4.138 21 C -0.127 4.127 22 C -0.126 4.126 23 C -0.151 4.151 24 C 0.062 3.938 25 H 0.062 0.938 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.020 0.980 29 H 0.013 0.987 30 H 0.265 0.735 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.043 0.957 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.145 0.855 41 H 0.148 0.852 42 H 0.141 0.859 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.151 -1.930 25.347 25.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.088 4.088 3 H 0.076 0.924 4 C -0.043 4.043 5 C -0.555 4.555 6 H 0.055 0.945 7 C -0.192 4.192 8 N -0.594 5.594 9 Si 0.768 3.232 10 H -0.195 1.195 11 H -0.170 1.170 12 H -0.211 1.211 13 C -0.054 4.054 14 N -0.203 5.203 15 C -0.080 4.080 16 C -0.069 4.069 17 N -0.220 5.220 18 C -0.120 4.120 19 C -0.042 4.042 20 C -0.159 4.159 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.172 4.172 24 C -0.038 4.038 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.031 0.969 30 H 0.073 0.927 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.114 0.886 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.159 0.841 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.121 -1.627 25.022 25.164 hybrid contribution 0.273 -0.533 -0.986 1.154 sum 2.395 -2.160 24.036 24.251 Atomic orbital electron populations 1.21499 0.94732 1.00880 1.00199 1.20961 0.96656 0.98807 0.92417 0.92449 1.19556 0.95644 0.96015 0.93101 1.21396 1.34389 1.08697 0.91050 0.94488 1.25943 0.96981 1.00720 0.95543 1.70058 1.49015 1.41595 0.98688 0.85750 0.79181 0.80180 0.78102 1.19470 1.17043 1.21111 1.22323 0.97780 0.97651 0.87634 1.58855 1.56843 1.03484 1.01132 1.22393 0.98167 0.88552 0.98871 1.22352 0.96386 0.99221 0.88949 1.58942 1.54724 1.01752 1.06576 1.22611 0.99845 1.01712 0.87874 1.18916 1.00797 0.89453 0.95001 1.21193 1.02909 0.94655 0.97121 1.21198 1.00422 0.93915 0.99055 1.21173 0.99920 1.00675 0.92723 1.21187 1.03783 0.91905 1.00359 1.18978 0.99610 0.93437 0.91781 0.91943 0.94849 0.93648 0.96168 0.96909 0.92657 0.89527 0.94821 0.93852 0.88597 0.86903 0.92975 0.94644 0.89292 0.89128 0.83746 0.83416 0.84104 0.85713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.37 8.86 71.98 0.64 -3.74 16 2 C -0.07 -2.70 2.10 -10.79 -0.02 -2.72 16 3 H 0.06 2.30 6.25 -2.39 -0.01 2.28 16 4 C -0.01 -0.25 3.52 29.85 0.10 -0.14 16 5 C -0.52 -29.62 9.03 25.60 0.23 -29.38 16 6 H 0.04 2.32 7.31 -2.91 -0.02 2.30 16 7 C 0.00 0.26 5.47 84.65 0.46 0.73 16 8 N -0.95 -60.08 13.96 21.45 0.30 -59.78 16 9 Si 0.94 44.64 27.47 68.60 1.88 46.53 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 11 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 C 0.07 2.35 3.89 86.30 0.34 2.69 16 14 N -0.49 -14.67 4.06 -694.38 -2.82 -17.49 16 15 C 0.05 1.30 5.11 86.47 0.44 1.74 16 16 C 0.06 1.28 5.71 86.47 0.49 1.77 16 17 N -0.50 -11.29 4.88 -719.20 -3.51 -14.80 16 18 C 0.02 0.38 8.93 127.69 1.14 1.52 16 19 C 0.06 1.48 5.78 38.26 0.22 1.71 16 20 C -0.14 -2.85 9.05 22.46 0.20 -2.65 16 21 C -0.13 -2.39 10.04 22.23 0.22 -2.17 16 22 C -0.13 -2.67 10.04 22.23 0.22 -2.44 16 23 C -0.15 -3.97 9.05 22.46 0.20 -3.77 16 24 C 0.06 1.78 5.78 38.25 0.22 2.00 16 25 H 0.06 2.10 7.62 -2.38 -0.02 2.08 16 26 H 0.03 1.41 7.11 -2.38 -0.02 1.39 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.02 0.93 7.20 -2.38 -0.02 0.91 16 29 H 0.01 0.58 7.57 -2.39 -0.02 0.56 16 30 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 31 H 0.09 2.72 5.91 -2.39 -0.01 2.71 16 32 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.04 1.29 8.13 -2.39 -0.02 1.27 16 34 H 0.10 2.70 6.53 -2.39 -0.02 2.69 16 35 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 37 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.09 1.11 6.23 -2.39 -0.01 1.09 16 39 H 0.09 1.07 8.11 -2.39 -0.02 1.05 16 40 H 0.14 2.26 6.07 -2.91 -0.02 2.24 16 41 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 43 H 0.13 3.25 5.96 -2.91 -0.02 3.24 16 Total: -1.00 -67.42 328.60 1.90 -65.52 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.92 Total: 14.88 kcal Atomic # 6 Polarization: -39.99 SS G_CDS: 5.12 Total: -34.86 kcal Atomic # 7 Polarization: -86.03 SS G_CDS: -6.03 Total: -92.07 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 1.88 Total: 46.53 kcal Total: -67.42 1.90 -65.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887672.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.479 kcal (2) G-P(sol) polarization free energy of solvation -67.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds