Wall clock time and date at job start Mon Mar 30 2020 01:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00373 * 2 1 4 4 H 1.08997 * 109.46987 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.46943 * 240.00472 * 3 2 1 6 6 N 1.46890 * 109.47299 * 120.00321 * 3 2 1 7 7 C 1.46898 * 111.00122 * 205.00212 * 6 3 2 8 8 C 1.50696 * 109.47414 * 179.97438 * 7 6 3 9 9 C 1.38289 * 119.92661 * 89.99759 * 8 7 6 10 10 C 1.38100 * 120.07703 * 180.02562 * 9 8 7 11 11 C 1.38913 * 119.92613 * 359.97438 * 10 9 8 12 12 N 1.39673 * 120.07616 * 179.97438 * 11 10 9 13 13 C 1.46498 * 120.00285 * 0.02562 * 12 11 10 14 14 C 1.46506 * 119.99960 * 180.02562 * 12 11 10 15 15 C 1.50703 * 109.47289 * 89.99927 * 14 12 11 16 16 H 1.07994 * 119.99399 * 0.02562 * 15 14 12 17 17 C 1.37874 * 119.99789 * 179.97438 * 15 14 12 18 18 N 1.31518 * 120.00144 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99733 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47181 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46716 * 120.00463 * 19 17 15 22 22 H 1.48500 * 109.46999 * 240.00161 * 19 17 15 23 23 C 1.38912 * 119.84952 * 0.25994 * 11 10 9 24 24 C 1.38107 * 119.92242 * 359.48694 * 23 11 10 25 25 H 1.08006 * 120.00525 * 180.02562 * 1 2 3 26 26 H 1.07998 * 120.00264 * 359.97438 * 1 2 3 27 27 H 1.08009 * 119.99743 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47658 * 60.00089 * 5 3 2 29 29 H 1.09000 * 109.46857 * 180.02562 * 5 3 2 30 30 H 1.08997 * 109.46952 * 299.99621 * 5 3 2 31 31 H 1.00907 * 110.99934 * 328.95044 * 6 3 2 32 32 H 1.09001 * 109.47483 * 59.99656 * 7 6 3 33 33 H 1.09001 * 109.47259 * 299.99695 * 7 6 3 34 34 H 1.07999 * 119.95876 * 0.02562 * 9 8 7 35 35 H 1.07996 * 120.04085 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.46923 * 270.00426 * 13 12 11 37 37 H 1.08997 * 109.46694 * 29.99558 * 13 12 11 38 38 H 1.08995 * 109.47258 * 149.99834 * 13 12 11 39 39 H 1.09001 * 109.47060 * 210.00378 * 14 12 11 40 40 H 1.09004 * 109.47073 * 329.99866 * 14 12 11 41 41 H 0.96997 * 119.99752 * 179.97438 * 18 17 15 42 42 H 1.08000 * 120.03937 * 179.72354 * 23 11 10 43 43 H 1.08005 * 119.96225 * 180.25637 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3553 2.1335 0.0005 5 6 2.9431 1.3860 -1.2493 6 7 2.9081 1.3828 1.1993 7 6 3.1827 2.7801 1.5602 8 6 4.0491 2.8197 2.7925 9 6 5.4264 2.8231 2.6677 10 6 6.2234 2.8588 3.7949 11 6 5.6401 2.8920 5.0553 12 7 6.4432 2.9277 6.1975 13 6 7.9024 2.9307 6.0672 14 6 5.8263 2.9620 7.5259 15 6 5.6213 1.5536 8.0212 16 1 5.9210 0.7167 7.4080 17 6 5.0522 1.3336 9.2576 18 7 4.6877 2.3530 10.0045 19 14 4.7974 -0.4122 9.8712 20 1 5.2875 -1.3723 8.8499 21 1 5.5513 -0.6074 11.1356 22 1 3.3513 -0.6447 10.1162 23 6 4.2564 2.8836 5.1772 24 6 3.4653 2.8530 4.0456 25 1 -0.5401 -0.9353 0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9354 -0.0004 28 1 2.3164 1.3284 -2.1393 29 1 3.4885 2.3298 -1.2491 30 1 3.6513 0.5575 -1.2493 31 1 2.4876 0.8861 1.9705 32 1 2.2431 3.2950 1.7604 33 1 3.6990 3.2733 0.7366 34 1 5.8791 2.7977 1.6875 35 1 7.2988 2.8610 3.6968 36 1 8.2689 1.9042 6.0636 37 1 8.1828 3.4199 5.1344 38 1 8.3410 3.4703 6.9066 39 1 6.4782 3.4984 8.2154 40 1 4.8637 3.4700 7.4665 41 1 4.2870 2.1982 10.8741 42 1 3.7997 2.9048 6.1557 43 1 2.3893 2.8507 4.1396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756902824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:11 Heat of formation + Delta-G solvation = 32.374805 kcal Electronic energy + Delta-G solvation = -20407.792331 eV Core-core repulsion = 17452.441101 eV Total energy + Delta-G solvation = -2955.351230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47440 -38.56616 -37.14260 -34.87069 -33.94721 -31.88370 -31.37521 -29.86477 -29.46023 -27.14019 -25.72875 -23.99642 -23.00758 -22.69331 -21.12100 -20.55166 -18.65425 -18.13790 -17.27479 -16.78704 -16.32697 -16.02171 -15.63888 -15.36170 -15.11352 -14.94438 -14.57920 -14.39053 -14.29091 -14.03428 -13.45058 -13.20876 -13.17520 -13.02595 -12.95718 -12.81802 -12.67973 -12.54194 -12.41825 -12.17314 -11.94482 -11.73896 -11.51093 -11.39334 -10.65049 -10.48458 -10.32466 -9.66417 -9.29767 -8.36750 -7.80554 -6.37919 0.71279 0.83223 1.35067 1.35500 1.37127 1.49616 2.34066 2.63440 3.04169 3.05705 3.55794 3.87155 4.06554 4.09333 4.23532 4.28318 4.40460 4.46441 4.55802 4.60752 4.64097 4.71786 4.73456 4.87944 4.91696 4.93152 4.99878 5.01265 5.12332 5.14268 5.18670 5.33745 5.40733 5.59144 5.66822 5.69964 5.71050 5.77267 5.92902 6.07124 6.17510 6.25568 6.48867 6.50036 6.82686 6.93660 7.34054 8.82787 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017633 B = 0.003900 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.563152 B = 7177.465983 C = 8236.627516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.167 4.167 3 C 0.108 3.892 4 H 0.047 0.953 5 C -0.133 4.133 6 N -0.686 5.686 7 C 0.121 3.879 8 C -0.159 4.159 9 C -0.048 4.048 10 C -0.218 4.218 11 C 0.213 3.787 12 N -0.632 5.632 13 C 0.099 3.901 14 C 0.266 3.734 15 C -0.541 4.541 16 H 0.047 0.953 17 C 0.013 3.987 18 N -0.926 5.926 19 Si 0.961 3.039 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.276 1.276 23 C -0.216 4.216 24 C -0.068 4.068 25 H 0.110 0.890 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.340 0.660 32 H 0.036 0.964 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.038 0.962 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.010 0.990 40 H 0.011 0.989 41 H 0.267 0.733 42 H 0.095 0.905 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -0.487 -20.394 20.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.185 4.185 3 C -0.001 4.001 4 H 0.065 0.935 5 C -0.191 4.191 6 N -0.317 5.317 7 C -0.007 4.007 8 C -0.162 4.162 9 C -0.067 4.067 10 C -0.241 4.241 11 C 0.108 3.892 12 N -0.340 5.340 13 C -0.044 4.044 14 C 0.145 3.855 15 C -0.580 4.580 16 H 0.066 0.934 17 C -0.186 4.186 18 N -0.566 5.566 19 Si 0.786 3.214 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.202 1.202 23 C -0.239 4.239 24 C -0.087 4.087 25 H 0.128 0.872 26 H 0.118 0.882 27 H 0.130 0.870 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.158 0.842 32 H 0.054 0.946 33 H 0.104 0.896 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.080 0.920 39 H 0.028 0.972 40 H 0.029 0.971 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.970 -0.487 -20.396 20.616 hybrid contribution -1.014 -0.552 1.583 1.960 sum -3.983 -1.039 -18.812 19.257 Atomic orbital electron populations 1.24068 0.95707 1.02725 0.99303 1.23058 0.96053 0.98386 1.00996 1.20733 0.93052 0.94667 0.91617 0.93509 1.21733 0.99506 1.02167 0.95706 1.60669 1.49995 1.13597 1.07477 1.20675 0.96716 0.89115 0.94243 1.19518 0.94279 1.08712 0.93687 1.20873 0.92742 0.95315 0.97814 1.20816 1.00404 1.12416 0.90426 1.18222 0.90742 0.92869 0.87376 1.46963 1.05273 1.77635 1.04148 1.21592 0.79556 1.00756 1.02452 1.18799 0.92535 0.95414 0.78801 1.21802 1.40595 0.93409 1.02171 0.93447 1.25772 0.94899 1.01306 0.96667 1.70041 1.42522 1.32105 1.11958 0.85454 0.78063 0.79647 0.78203 1.19629 1.19892 1.20186 1.20757 0.92830 1.11431 0.98866 1.20828 0.99048 0.97304 0.91563 0.87198 0.88191 0.87002 0.91627 0.92470 0.92576 0.84219 0.94598 0.89602 0.84212 0.84975 0.94329 0.89717 0.91966 0.97170 0.97101 0.92373 0.88664 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.67 14.32 67.79 0.97 -1.70 16 2 C -0.17 -2.84 8.75 25.65 0.22 -2.62 16 3 C 0.11 1.95 2.98 44.17 0.13 2.09 16 4 H 0.05 0.82 7.44 -2.39 -0.02 0.81 16 5 C -0.13 -2.16 9.40 71.98 0.68 -1.48 16 6 N -0.69 -15.20 6.29 -499.50 -3.14 -18.34 16 7 C 0.12 2.72 5.61 85.56 0.48 3.20 16 8 C -0.16 -4.64 5.39 -19.84 -0.11 -4.74 16 9 C -0.05 -1.41 9.69 22.25 0.22 -1.20 16 10 C -0.22 -7.35 9.21 22.40 0.21 -7.14 16 11 C 0.21 8.82 6.55 38.22 0.25 9.07 16 12 N -0.63 -28.16 2.99 -726.55 -2.17 -30.33 16 13 C 0.10 3.52 10.23 127.77 1.31 4.82 16 14 C 0.27 14.17 4.95 85.63 0.42 14.59 16 15 C -0.54 -30.88 9.39 25.60 0.24 -30.64 16 16 H 0.05 2.77 7.81 -2.91 -0.02 2.74 16 17 C 0.01 0.72 5.46 84.65 0.46 1.18 16 18 N -0.93 -54.71 13.29 21.45 0.28 -54.42 16 19 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 C -0.22 -9.14 9.20 22.40 0.21 -8.94 16 24 C -0.07 -2.33 9.69 22.25 0.22 -2.11 16 25 H 0.11 1.37 8.06 -2.91 -0.02 1.35 16 26 H 0.10 1.36 7.83 -2.91 -0.02 1.34 16 27 H 0.11 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.06 0.90 7.45 -2.39 -0.02 0.89 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.34 8.11 8.34 -89.69 -0.75 7.36 16 32 H 0.04 0.77 8.00 -2.39 -0.02 0.75 16 33 H 0.09 1.72 7.38 -2.39 -0.02 1.71 16 34 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.13 3.87 6.14 -2.91 -0.02 3.85 16 36 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 2.42 6.20 -2.39 -0.01 2.40 16 38 H 0.06 2.13 7.89 -2.39 -0.02 2.12 16 39 H 0.01 0.57 7.89 -2.39 -0.02 0.56 16 40 H 0.01 0.63 6.21 -2.38 -0.01 0.62 16 41 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 42 H 0.10 4.64 6.15 -2.91 -0.02 4.62 16 43 H 0.12 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -63.12 353.95 3.13 -60.00 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: 0.23 Total: 22.12 kcal Atomic # 6 Polarization: -31.51 SS G_CDS: 5.90 Total: -25.61 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -5.03 Total: -103.10 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -63.12 3.13 -60.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756902824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.370 kcal (2) G-P(sol) polarization free energy of solvation -63.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds